##gff-version 3
##sequence-region NC_009441 1 15471
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	15471	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	3117	.	-	1	ID=FJOH_RS26195;Dbxref=GeneID:31768007;Name=FJOH_RS26195;old_locus_tag=Fjoh_1208
NC_009441	GenBank	mRNA	1	3117	.	-	1	ID=FJOH_RS26195.t01;Parent=FJOH_RS26195
NC_009441	GenBank	CDS	1	3117	.	-	1	ID=FJOH_RS26195.p01;Parent=FJOH_RS26195.t01;Dbxref=GeneID:31768007;Name=FJOH_RS26195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012356.1%2CHMM:NF014427.1,COORDINATES: similar to AA sequence:RefSeq:WP_008463574.1;old_locus_tag=Fjoh_1208;product=starch-binding protein;protein_id=WP_012023290.1;transl_table=11;translation=length.1038
NC_009441	GenBank	exon	1	3117	.	-	1	Parent=FJOH_RS26195.t01
NC_009441	GenBank	gene	3441	5621	.	-	1	ID=FJOH_RS06295;Dbxref=GeneID:31764084;Name=FJOH_RS06295;old_locus_tag=Fjoh_1209
NC_009441	GenBank	mRNA	3441	5621	.	-	1	ID=FJOH_RS06295.t01;Parent=FJOH_RS06295
NC_009441	GenBank	CDS	3441	5621	.	-	1	ID=FJOH_RS06295.p01;Parent=FJOH_RS06295.t01;Dbxref=GeneID:31764084;Name=FJOH_RS06295;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138512.1;old_locus_tag=Fjoh_1209;product=glycoside hydrolase family 97 protein;protein_id=WP_123875667.1;transl_table=11;translation=length.726
NC_009441	GenBank	exon	3441	5621	.	-	1	Parent=FJOH_RS06295.t01
NC_009441	GenBank	gene	5670	7052	.	-	1	ID=FJOH_RS06300;Dbxref=GeneID:31764085;Name=FJOH_RS06300;old_locus_tag=Fjoh_1210
NC_009441	GenBank	mRNA	5670	7052	.	-	1	ID=FJOH_RS06300.t01;Parent=FJOH_RS06300
NC_009441	GenBank	CDS	5670	7052	.	-	1	ID=FJOH_RS06300.p01;Parent=FJOH_RS06300.t01;Dbxref=GeneID:31764085;Name=FJOH_RS06300;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138511.1;old_locus_tag=Fjoh_1210;product=alpha-amylase;protein_id=WP_012023292.1;transl_table=11;translation=length.460
NC_009441	GenBank	exon	5670	7052	.	-	1	Parent=FJOH_RS06300.t01
NC_009441	GenBank	gene	7158	8240	.	-	1	ID=FJOH_RS06305;Dbxref=GeneID:31764086;Name=FJOH_RS06305;old_locus_tag=Fjoh_1211
NC_009441	GenBank	mRNA	7158	8240	.	-	1	ID=FJOH_RS06305.t01;Parent=FJOH_RS06305
NC_009441	GenBank	CDS	7158	8240	.	-	1	ID=FJOH_RS06305.p01;Parent=FJOH_RS06305.t01;Dbxref=GeneID:31764086;Name=FJOH_RS06305;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138510.1;old_locus_tag=Fjoh_1211;product=hypothetical protein;protein_id=WP_012023293.1;transl_table=11;translation=length.360
NC_009441	GenBank	exon	7158	8240	.	-	1	Parent=FJOH_RS06305.t01
NC_009441	GenBank	gene	8254	9762	.	-	1	ID=FJOH_RS06310;Dbxref=GeneID:31764087;Name=FJOH_RS06310;old_locus_tag=Fjoh_1212
NC_009441	GenBank	mRNA	8254	9762	.	-	1	ID=FJOH_RS06310.t01;Parent=FJOH_RS06310
NC_009441	GenBank	CDS	8254	9762	.	-	1	ID=FJOH_RS06310.p01;Parent=FJOH_RS06310.t01;Dbxref=GeneID:31764087;Name=FJOH_RS06310;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138509.1;old_locus_tag=Fjoh_1212;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012023294.1;transl_table=11;translation=length.502
NC_009441	GenBank	exon	8254	9762	.	-	1	Parent=FJOH_RS06310.t01
NC_009441	GenBank	gene	9771	13043	.	-	1	ID=FJOH_RS06315;Dbxref=GeneID:31764088;Name=FJOH_RS06315;old_locus_tag=Fjoh_1213
NC_009441	GenBank	mRNA	9771	13043	.	-	1	ID=FJOH_RS06315.t01;Parent=FJOH_RS06315
NC_009441	GenBank	CDS	9771	13043	.	-	1	ID=FJOH_RS06315.p01;Parent=FJOH_RS06315.t01;Dbxref=GeneID:31764088;Name=FJOH_RS06315;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138508.1;old_locus_tag=Fjoh_1213;product=TonB-dependent receptor;protein_id=WP_012023295.1;transl_table=11;translation=length.1090
NC_009441	GenBank	exon	9771	13043	.	-	1	Parent=FJOH_RS06315.t01
NC_009441	GenBank	gene	13174	14352	.	-	1	ID=FJOH_RS06320;Dbxref=GeneID:31764089;Name=FJOH_RS06320;old_locus_tag=Fjoh_1214
NC_009441	GenBank	mRNA	13174	14352	.	-	1	ID=FJOH_RS06320.t01;Parent=FJOH_RS06320
NC_009441	GenBank	CDS	13174	14352	.	-	1	ID=FJOH_RS06320.p01;Parent=FJOH_RS06320.t01;Dbxref=GeneID:31764089;Name=FJOH_RS06320;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138507.1;old_locus_tag=Fjoh_1214;product=FecR family protein;protein_id=WP_012023296.1;transl_table=11;translation=length.392
NC_009441	GenBank	exon	13174	14352	.	-	1	Parent=FJOH_RS06320.t01
NC_009441	GenBank	gene	14908	15471	.	-	1	ID=FJOH_RS06325;Dbxref=GeneID:31764090;Name=FJOH_RS06325;old_locus_tag=Fjoh_1215
NC_009441	GenBank	mRNA	14908	15471	.	-	1	ID=FJOH_RS06325.t01;Parent=FJOH_RS06325
NC_009441	GenBank	CDS	14908	15471	.	-	1	ID=FJOH_RS06325.p01;Parent=FJOH_RS06325.t01;Dbxref=GeneID:31764090;Name=FJOH_RS06325;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138506.1;old_locus_tag=Fjoh_1215;product=RNA polymerase sigma-70 factor;protein_id=WP_012023297.1;transl_table=11;translation=length.187
NC_009441	GenBank	exon	14908	15471	.	-	1	Parent=FJOH_RS06325.t01