##gff-version 3 ##sequence-region NC_004663 1 53785 # conversion-by bp_genbank2gff3.pl # organism Bacteroides thetaiotaomicron VPI-5482 # Note Bacteroides thetaiotaomicron VPI-5482, complete sequence. # date 21-AUG-2022 NC_004663 GenBank region 1 53785 . + 1 ID=NC_004663;Dbxref=BioProject:PRJNA224116,taxon:226186;Name=NC_004663;Note=Bacteroides thetaiotaomicron VPI-5482%2C complete sequence.,REFSEQ INFORMATION: The reference sequence is identical to AE015928.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/21/2022 09:52:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset,GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,\nrepeat_region\nGenes (total) :: 4,877\nCDSs (total) :: 4,790\nGenes (coding) :: 4,695\nCDSs (with protein) :: 4,695\nGenes (RNA) :: 87\nrRNAs :: 5,5,5 (5S,16S,23S)\ncomplete rRNAs :: 5,5,5 (5S,16S,23S)\ntRNAs :: 70\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 45 of 95\nPseudo Genes (incomplete) :: 49 of 95\nPseudo Genes (internal stop) :: 20 of 95\nPseudo Genes (multiple problems) :: 15 of 95\n##Genome-Annotation-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to AE015928.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/21/2022 09:52:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset%3B GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B\nrepeat_region\nGenes (total) :: 4%2C877\nCDSs (total) :: 4%2C790\nGenes (coding) :: 4%2C695\nCDSs (with protein) :: 4%2C695\nGenes (RNA) :: 87\nrRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S)\ncomplete rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S)\ntRNAs :: 70\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 45 of 95\nPseudo Genes (incomplete) :: 49 of 95\nPseudo Genes (internal stop) :: 20 of 95\nPseudo Genes (multiple problems) :: 15 of 95\n##Genome-Annotation-Data-END##;date=21-AUG-2022;mol_type=genomic DNA;organism=Bacteroides thetaiotaomicron VPI-5482;strain=VPI-5482;type_material=type strain of Bacteroides thetaiotaomicron NC_004663 GenBank pseudogenic_exon 1 1059 . - 1 ID=BT_RS20935;Name=BT_RS20935;Note=frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009040083.1;old_locus_tag=BT4149,BT_4149;product=glycoside hydrolase family 28 protein;pseudo=_no_value;transl_table=11 NC_004663 GenBank pseudogene 1 1059 . - 1 ID=BT_RS20935.pseudogene;Alias=BT_RS20935;Name=BT_RS20935;old_locus_tag=BT4149,BT_4149;pseudo=_no_value NC_004663 GenBank gene 1084 2322 . - 1 ID=BT_RS20940;Name=BT_RS20940;old_locus_tag=BT4150,BT_4150 NC_004663 GenBank mRNA 1084 2322 . - 1 ID=BT_RS20940.t01;Parent=BT_RS20940 NC_004663 GenBank CDS 1084 2322 . - 1 ID=BT_RS20940;Parent=BT_RS20940.t01;Name=BT_RS20940;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008771097.1;old_locus_tag=BT4150,BT_4150;product=rhamnogalacturonan acetylesterase;protein_id=WP_011109136.1;transl_table=11;translation=length.412 NC_004663 GenBank exon 1084 2322 . - 1 Parent=BT_RS20940.t01 NC_004663 GenBank gene 2340 5216 . - 1 ID=BT_RS20945;Name=BT_RS20945;old_locus_tag=BT4151,BT_4151 NC_004663 GenBank mRNA 2340 5216 . - 1 ID=BT_RS20945.t01;Parent=BT_RS20945 NC_004663 GenBank CDS 2340 5216 . - 1 ID=BT_RS20945;Parent=BT_RS20945.t01;Name=BT_RS20945;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005853726.1;old_locus_tag=BT4151,BT_4151;product=beta-glucuronidase;protein_id=WP_011109137.1;transl_table=11;translation=length.958 NC_004663 GenBank exon 2340 5216 . - 1 Parent=BT_RS20945.t01 NC_004663 GenBank gene 5459 8440 . + 1 ID=BT_RS20950;Name=BT_RS20950;old_locus_tag=BT4152,BT_4152 NC_004663 GenBank mRNA 5459 8440 . + 1 ID=BT_RS20950.t01;Parent=BT_RS20950 NC_004663 GenBank CDS 5459 8440 . + 1 ID=BT_RS20950;Parent=BT_RS20950.t01;eC_number=3.2.1.23;gO_component=GO:0009341 - beta-galactosidase complex [Evidence IEA];gO_function=GO:0004565 - beta-galactosidase activity [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=BT_RS20950;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016268557.1;old_locus_tag=BT4152,BT_4152;product=beta-galactosidase;protein_id=WP_225011864.1;transl_table=11;translation=length.993 NC_004663 GenBank exon 5459 8440 . + 1 Parent=BT_RS20950.t01 NC_004663 GenBank gene 8484 9782 . + 1 ID=BT_RS20955;Name=BT_RS20955;old_locus_tag=BT4153,BT_4153 NC_004663 GenBank mRNA 8484 9782 . + 1 ID=BT_RS20955.t01;Parent=BT_RS20955 NC_004663 GenBank CDS 8484 9782 . + 1 ID=BT_RS20955;Parent=BT_RS20955.t01;gO_function=GO:0004650 - polygalacturonase activity [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=BT_RS20955;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010536736.1;old_locus_tag=BT4153,BT_4153;product=glycosyl hydrolase family 28 protein;protein_id=WP_011109139.1;transl_table=11;translation=length.432 NC_004663 GenBank exon 8484 9782 . + 1 Parent=BT_RS20955.t01 NC_004663 GenBank gene 9795 10763 . + 1 ID=BT_RS20960;Name=BT_RS20960;old_locus_tag=BT4154,BT_4154 NC_004663 GenBank mRNA 9795 10763 . + 1 ID=BT_RS20960.t01;Parent=BT_RS20960 NC_004663 GenBank CDS 9795 10763 . + 1 ID=BT_RS20960;Parent=BT_RS20960.t01;eC_number=3.-.-.-;Name=BT_RS20960;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764370.1;old_locus_tag=BT4154,BT_4154;product=polysaccharide deacetylase family protein;protein_id=WP_011109140.1;transl_table=11;translation=length.322 NC_004663 GenBank exon 9795 10763 . + 1 Parent=BT_RS20960.t01 NC_004663 GenBank gene 10797 12176 . + 1 ID=BT_RS20965;Name=BT_RS20965;old_locus_tag=BT4155,BT_4155 NC_004663 GenBank mRNA 10797 12176 . + 1 ID=BT_RS20965.t01;Parent=BT_RS20965 NC_004663 GenBank CDS 10797 12176 . + 1 ID=BT_RS20965;Parent=BT_RS20965.t01;Name=BT_RS20965;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009000443.1;old_locus_tag=BT4155,BT_4155;product=glycoside hydrolase family 28 protein;protein_id=WP_162303131.1;transl_table=11;translation=length.459 NC_004663 GenBank exon 10797 12176 . + 1 Parent=BT_RS20965.t01 NC_004663 GenBank gene 12301 15186 . - 1 ID=BT_RS20970;Name=BT_RS20970;old_locus_tag=BT4156,BT_4156 NC_004663 GenBank mRNA 12301 15186 . - 1 ID=BT_RS20970.t01;Parent=BT_RS20970 NC_004663 GenBank CDS 12301 15186 . - 1 ID=BT_RS20970;Parent=BT_RS20970.t01;Name=BT_RS20970;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007856148.1;old_locus_tag=BT4156,BT_4156;product=glycoside hydrolase family 2 TIM barrel-domain containing protein;protein_id=WP_011109142.1;transl_table=11;translation=length.961 NC_004663 GenBank exon 12301 15186 . - 1 Parent=BT_RS20970.t01 NC_004663 GenBank gene 15211 16794 . - 1 ID=BT_RS20975;Name=BT_RS20975;old_locus_tag=BT4157,BT_4157 NC_004663 GenBank mRNA 15211 16794 . - 1 ID=BT_RS20975.t01;Parent=BT_RS20975 NC_004663 GenBank CDS 15211 16794 . - 1 ID=BT_RS20975;Parent=BT_RS20975.t01;eC_number=3.2.1.22;Name=BT_RS20975;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008759821.1;old_locus_tag=BT4157,BT_4157;product=alpha-galactosidase;protein_id=WP_055229316.1;transl_table=11;translation=length.527 NC_004663 GenBank exon 15211 16794 . - 1 Parent=BT_RS20975.t01 NC_004663 GenBank gene 17038 17730 . + 1 ID=BT_RS20980;Name=BT_RS20980;old_locus_tag=BT4158,BT_4158 NC_004663 GenBank mRNA 17038 17730 . + 1 ID=BT_RS20980.t01;Parent=BT_RS20980 NC_004663 GenBank CDS 17038 17730 . + 1 ID=BT_RS20980;Parent=BT_RS20980.t01;Name=BT_RS20980;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010536743.1;old_locus_tag=BT4158,BT_4158;product=SGNH/GDSL hydrolase family protein;protein_id=WP_008764375.1;transl_table=11;translation=length.230 NC_004663 GenBank exon 17038 17730 . + 1 Parent=BT_RS20980.t01 NC_004663 GenBank gene 17971 19632 . + 1 ID=BT_RS20985;Name=BT_RS20985;old_locus_tag=BT4159,BT_4159 NC_004663 GenBank mRNA 17971 19632 . + 1 ID=BT_RS20985.t01;Parent=BT_RS20985 NC_004663 GenBank CDS 17971 19632 . + 1 ID=BT_RS20985;Parent=BT_RS20985.t01;Name=BT_RS20985;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008759825.1;old_locus_tag=BT4159,BT_4159;product=glycoside hydrolase family protein;protein_id=WP_008764376.1;transl_table=11;translation=length.553 NC_004663 GenBank exon 17971 19632 . + 1 Parent=BT_RS20985.t01 NC_004663 GenBank gene 19661 21757 . + 1 ID=BT_RS20990;Name=BT_RS20990;old_locus_tag=BT4160,BT_4160 NC_004663 GenBank mRNA 19661 21757 . + 1 ID=BT_RS20990.t01;Parent=BT_RS20990 NC_004663 GenBank CDS 19661 21757 . + 1 ID=BT_RS20990;Parent=BT_RS20990.t01;eC_number=3.2.1.23;Name=BT_RS20990;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016268547.1;old_locus_tag=BT4160,BT_4160;product=beta-galactosidase;protein_id=WP_011109145.1;transl_table=11;translation=length.698 NC_004663 GenBank exon 19661 21757 . + 1 Parent=BT_RS20990.t01 NC_004663 GenBank gene 21896 22498 . - 1 ID=BT_RS20995;Name=BT_RS20995;old_locus_tag=BT4161,BT_4161 NC_004663 GenBank mRNA 21896 22498 . - 1 ID=BT_RS20995.t01;Parent=BT_RS20995 NC_004663 GenBank CDS 21896 22498 . - 1 ID=BT_RS20995;Parent=BT_RS20995.t01;Name=BT_RS20995;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011109146.1;old_locus_tag=BT4161,BT_4161;product=DsbA family protein;protein_id=WP_011109146.1;transl_table=11;translation=length.200 NC_004663 GenBank exon 21896 22498 . - 1 Parent=BT_RS20995.t01 NC_004663 GenBank gene 22911 24989 . + 1 ID=BT_RS21000;Name=BT_RS21000;old_locus_tag=BT4162,BT_4162 NC_004663 GenBank mRNA 22911 24989 . + 1 ID=BT_RS21000.t01;Parent=BT_RS21000 NC_004663 GenBank CDS 22911 24989 . + 1 ID=BT_RS21000;Parent=BT_RS21000.t01;Name=BT_RS21000;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011109147.1;old_locus_tag=BT4162,BT_4162;product=BT4734/BF3469 family protein;protein_id=WP_011109147.1;transl_table=11;translation=length.692 NC_004663 GenBank exon 22911 24989 . + 1 Parent=BT_RS21000.t01 NC_004663 GenBank gene 25548 27881 . + 1 ID=BT_RS21005;Name=BT_RS21005;old_locus_tag=BT4163,BT_4163 NC_004663 GenBank mRNA 25548 27881 . + 1 ID=BT_RS21005.t01;Parent=BT_RS21005 NC_004663 GenBank CDS 25548 27881 . + 1 ID=BT_RS21005;Parent=BT_RS21005.t01;Name=BT_RS21005;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016268536.1;old_locus_tag=BT4163,BT_4163;product=fasciclin domain-containing protein;protein_id=WP_008764380.1;transl_table=11;translation=length.777 NC_004663 GenBank exon 25548 27881 . + 1 Parent=BT_RS21005.t01 NC_004663 GenBank gene 27900 31166 . + 1 ID=BT_RS21010;Name=BT_RS21010;old_locus_tag=BT4164,BT_4164 NC_004663 GenBank mRNA 27900 31166 . + 1 ID=BT_RS21010.t01;Parent=BT_RS21010 NC_004663 GenBank CDS 27900 31166 . + 1 ID=BT_RS21010;Parent=BT_RS21010.t01;gO_component=GO:0045203 - integral component of cell outer membrane [Evidence IEA];gO_function=GO:0022857 - transmembrane transporter activity [Evidence IEA];gO_process=GO:0071702 - organic substance transport [Evidence IEA];Name=BT_RS21010;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764381.1;old_locus_tag=BT4164,BT_4164;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=WP_008764381.1;transl_table=11;translation=length.1088 NC_004663 GenBank exon 27900 31166 . + 1 Parent=BT_RS21010.t01 NC_004663 GenBank gene 31179 32765 . + 1 ID=BT_RS21015;Name=BT_RS21015;old_locus_tag=BT4165,BT_4165 NC_004663 GenBank mRNA 31179 32765 . + 1 ID=BT_RS21015.t01;Parent=BT_RS21015 NC_004663 GenBank CDS 31179 32765 . + 1 ID=BT_RS21015;Parent=BT_RS21015.t01;Name=BT_RS21015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010536762.1;old_locus_tag=BT4165,BT_4165;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_032840505.1;transl_table=11;translation=length.528 NC_004663 GenBank exon 31179 32765 . + 1 Parent=BT_RS21015.t01 NC_004663 GenBank gene 32774 34519 . + 1 ID=BT_RS21020;Name=BT_RS21020;old_locus_tag=BT4166,BT_4166 NC_004663 GenBank mRNA 32774 34519 . + 1 ID=BT_RS21020.t01;Parent=BT_RS21020 NC_004663 GenBank CDS 32774 34519 . + 1 ID=BT_RS21020;Parent=BT_RS21020.t01;Name=BT_RS21020;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008759840.1;old_locus_tag=BT4166,BT_4166;product=DUF5108 domain-containing protein;protein_id=WP_011109149.1;transl_table=11;translation=length.581 NC_004663 GenBank exon 32774 34519 . + 1 Parent=BT_RS21020.t01 NC_004663 GenBank gene 34525 36267 . + 1 ID=BT_RS21025;Name=BT_RS21025;old_locus_tag=BT4167,BT_4167 NC_004663 GenBank mRNA 34525 36267 . + 1 ID=BT_RS21025.t01;Parent=BT_RS21025 NC_004663 GenBank CDS 34525 36267 . + 1 ID=BT_RS21025;Parent=BT_RS21025.t01;Name=BT_RS21025;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764384.1;old_locus_tag=BT4167,BT_4167;product=hypothetical protein;protein_id=WP_008764384.1;transl_table=11;translation=length.580 NC_004663 GenBank exon 34525 36267 . + 1 Parent=BT_RS21025.t01 NC_004663 GenBank gene 36284 39436 . + 1 ID=BT_RS21030;Name=BT_RS21030;old_locus_tag=BT4168,BT_4168 NC_004663 GenBank mRNA 36284 39436 . + 1 ID=BT_RS21030.t01;Parent=BT_RS21030 NC_004663 GenBank CDS 36284 39436 . + 1 ID=BT_RS21030;Parent=BT_RS21030.t01;Name=BT_RS21030;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764385.1;old_locus_tag=BT4168,BT_4168;product=TonB-dependent receptor;protein_id=WP_008764385.1;transl_table=11;translation=length.1050 NC_004663 GenBank exon 36284 39436 . + 1 Parent=BT_RS21030.t01 NC_004663 GenBank gene 39442 41193 . + 1 ID=BT_RS21035;Name=BT_RS21035;old_locus_tag=BT4169,BT_4169 NC_004663 GenBank mRNA 39442 41193 . + 1 ID=BT_RS21035.t01;Parent=BT_RS21035 NC_004663 GenBank CDS 39442 41193 . + 1 ID=BT_RS21035;Parent=BT_RS21035.t01;Name=BT_RS21035;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764386.1;old_locus_tag=BT4169,BT_4169;product=hypothetical protein;protein_id=WP_008764386.1;transl_table=11;translation=length.583 NC_004663 GenBank exon 39442 41193 . + 1 Parent=BT_RS21035.t01 NC_004663 GenBank gene 41226 42833 . + 1 ID=BT_RS21040;Name=BT_RS21040;old_locus_tag=BT4170,BT_4170 NC_004663 GenBank mRNA 41226 42833 . + 1 ID=BT_RS21040.t01;Parent=BT_RS21040 NC_004663 GenBank CDS 41226 42833 . + 1 ID=BT_RS21040;Parent=BT_RS21040.t01;Name=BT_RS21040;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764387.1;old_locus_tag=BT4170,BT_4170;product=DUF4990 domain-containing protein;protein_id=WP_008764387.1;transl_table=11;translation=length.535 NC_004663 GenBank exon 41226 42833 . + 1 Parent=BT_RS21040.t01 NC_004663 GenBank gene 42855 43508 . + 1 ID=BT_RS21045;Name=BT_RS21045;old_locus_tag=BT4171,BT_4171 NC_004663 GenBank mRNA 42855 43508 . + 1 ID=BT_RS21045.t01;Parent=BT_RS21045 NC_004663 GenBank CDS 42855 43508 . + 1 ID=BT_RS21045;Parent=BT_RS21045.t01;Name=BT_RS21045;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010536768.1;old_locus_tag=BT4171,BT_4171;product=hypothetical protein;protein_id=WP_008764388.1;transl_table=11;translation=length.217 NC_004663 GenBank exon 42855 43508 . + 1 Parent=BT_RS21045.t01 NC_004663 GenBank gene 43761 47057 . + 1 ID=BT_RS21050;Name=BT_RS21050;old_locus_tag=BT4172,BT_4172 NC_004663 GenBank mRNA 43761 47057 . + 1 ID=BT_RS21050.t01;Parent=BT_RS21050 NC_004663 GenBank CDS 43761 47057 . + 1 ID=BT_RS21050;Parent=BT_RS21050.t01;Name=BT_RS21050;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008764390.1;old_locus_tag=BT4172,BT_4172;product=DUF6250 domain-containing protein;protein_id=WP_008764390.1;transl_table=11;translation=length.1098 NC_004663 GenBank exon 43761 47057 . + 1 Parent=BT_RS21050.t01 NC_004663 GenBank gene 47136 48770 . - 1 ID=BT_RS21055;Name=BT_RS21055;old_locus_tag=BT4173,BT_4173 NC_004663 GenBank mRNA 47136 48770 . - 1 ID=BT_RS21055.t01;Parent=BT_RS21055 NC_004663 GenBank CDS 47136 48770 . - 1 ID=BT_RS21055;Parent=BT_RS21055.t01;Name=BT_RS21055;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016278014.1;old_locus_tag=BT4173,BT_4173;product=rhamnogalacturonan acetylesterase;protein_id=WP_032840507.1;transl_table=11;translation=length.544 NC_004663 GenBank exon 47136 48770 . - 1 Parent=BT_RS21055.t01 NC_004663 GenBank pseudogenic_exon 48791 49931 . - 1 ID=BT_RS21060;Name=BT_RS21060;Note=frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008642231.1;old_locus_tag=BT4174,BT_4174;product=glycoside hydrolase family 88 protein;pseudo=_no_value;transl_table=11 NC_004663 GenBank pseudogene 48791 49931 . - 1 ID=BT_RS21060.pseudogene;Alias=BT_RS21060;Name=BT_RS21060;old_locus_tag=BT4174,BT_4174;pseudo=_no_value NC_004663 GenBank gene 50198 52039 . + 1 ID=BT_RS21065;Name=BT_RS21065;old_locus_tag=BT4175,BT_4175 NC_004663 GenBank mRNA 50198 52039 . + 1 ID=BT_RS21065.t01;Parent=BT_RS21065 NC_004663 GenBank CDS 50198 52039 . + 1 ID=BT_RS21065;Parent=BT_RS21065.t01;Name=BT_RS21065;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004324929.1;old_locus_tag=BT4175,BT_4175;product=rhamnogalacturonan lyase;protein_id=WP_008764392.1;transl_table=11;translation=length.613 NC_004663 GenBank exon 50198 52039 . + 1 Parent=BT_RS21065.t01 NC_004663 GenBank gene 52043 53440 . + 1 ID=BT_RS21070;Name=BT_RS21070;old_locus_tag=BT4176,BT_4176 NC_004663 GenBank mRNA 52043 53440 . + 1 ID=BT_RS21070.t01;Parent=BT_RS21070 NC_004663 GenBank CDS 52043 53440 . + 1 ID=BT_RS21070;Parent=BT_RS21070.t01;Name=BT_RS21070;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016268525.1;old_locus_tag=BT4176,BT_4176;product=glycoside hydrolase family 88 protein;protein_id=WP_011109152.1;transl_table=11;translation=length.465 NC_004663 GenBank exon 52043 53440 . + 1 Parent=BT_RS21070.t01 NC_004663 GenBank gene 53471 53785 . + 1 ID=BT_RS21075;Name=rhaM;locus_tag=BT_RS21075;old_locus_tag=BT4177,BT_4177 NC_004663 GenBank mRNA 53471 53785 . + 1 ID=BT_RS21075.t01;Parent=BT_RS21075 NC_004663 GenBank CDS 53471 53785 . + 1 ID=BT_RS21075;Parent=BT_RS21075.t01;eC_number=5.1.3.32;gO_function=GO:0016857 - racemase and epimerase activity%2C acting on carbohydrates and derivatives [Evidence IEA];gO_process=GO:0019301 - rhamnose catabolic process [Evidence IEA];Name=rhaM;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008759851.1;locus_tag=BT_RS21075;old_locus_tag=BT4177,BT_4177;product=L-rhamnose mutarotase;protein_id=WP_008759851.1;transl_table=11;translation=length.104 NC_004663 GenBank exon 53471 53785 . + 1 Parent=BT_RS21075.t01