##gff-version 3 ##sequence-region NZ_ABJL02000007 1 22545 # conversion-by bp_genbank2gff3.pl # organism Bacteroides intestinalis DSM 17393 # Note Bacteroides intestinalis DSM 17393 B_intestinalis-2.0.1_Cont606, whole genome shotgun sequence. # date 25-DEC-2020 NZ_ABJL02000007 GenBank region 1 22545 . + 1 ID=NZ_ABJL02000007;Dbxref=BioProject:PRJNA224116,taxon:471870;Name=NZ_ABJL02000007;Note=Bacteroides intestinalis DSM 17393 B_intestinalis-2.0.1_Cont606%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to ABJL02000007.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/17/2020 02:09:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset,GeneMarkS-2+\nAnnotation Software revision :: 5.0\nFeatures Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,\nrepeat_region\nGenes (total) :: 4,666\nCDSs (total) :: 4,591\nGenes (coding) :: 4,488\nCDSs (with protein) :: 4,488\nGenes (RNA) :: 75\nrRNAs :: 4,4,4 (5S,16S,23S)\ncomplete rRNAs :: 4,4,3 (5S,16S,23S)\npartial rRNAs :: 1 (23S)\ntRNAs :: 61\nncRNAs :: 2\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 47 of 103\nPseudo Genes (incomplete) :: 57 of 103\nPseudo Genes (internal stop) :: 26 of 103\nPseudo Genes (multiple problems) :: 22 of 103\n##Genome-Annotation-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to ABJL02000007.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/17/2020 02:09:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset%3B GeneMarkS-2+\nAnnotation Software revision :: 5.0\nFeatures Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B\nrepeat_region\nGenes (total) :: 4%2C666\nCDSs (total) :: 4%2C591\nGenes (coding) :: 4%2C488\nCDSs (with protein) :: 4%2C488\nGenes (RNA) :: 75\nrRNAs :: 4%2C 4%2C 4 (5S%2C 16S%2C 23S)\ncomplete rRNAs :: 4%2C 4%2C 3 (5S%2C 16S%2C 23S)\npartial rRNAs :: 1 (23S)\ntRNAs :: 61\nncRNAs :: 2\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 47 of 103\nPseudo Genes (incomplete) :: 57 of 103\nPseudo Genes (internal stop) :: 26 of 103\nPseudo Genes (multiple problems) :: 22 of 103\n##Genome-Annotation-Data-END##;date=25-DEC-2020;host=Homo sapiens;isolation_source=biological product [ENVO:02000043];mol_type=genomic DNA;organism=Bacteroides intestinalis DSM 17393;strain=DSM 17393;type_material=type strain of Bacteroides intestinalis NZ_ABJL02000007 GenBank gene 1 1158 . + 1 ID=BACINT_RS04710;Name=BACINT_RS04710;old_locus_tag=BACINT_01033 NZ_ABJL02000007 GenBank mRNA 1 1158 . + 1 ID=BACINT_RS04710;Parent=BACINT_RS04710 NZ_ABJL02000007 GenBank CDS 1 1158 . + 1 ID=BACINT_RS04710;Parent=BACINT_RS04710;Name=BACINT_RS04710;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007216407.1;old_locus_tag=BACINT_01033;product=esterase;protein_id=WP_044154864.1;transl_table=11;translation=length.385 NZ_ABJL02000007 GenBank exon 1 1158 . + 1 Parent=BACINT_RS04710 NZ_ABJL02000007 GenBank gene 1189 1887 . + 1 ID=BACINT_RS04715;Name=BACINT_RS04715;old_locus_tag=BACINT_01034 NZ_ABJL02000007 GenBank mRNA 1189 1887 . + 1 ID=BACINT_RS04715;Parent=BACINT_RS04715 NZ_ABJL02000007 GenBank CDS 1189 1887 . + 1 ID=BACINT_RS04715;Parent=BACINT_RS04715;Name=BACINT_RS04715;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004292094.1;old_locus_tag=BACINT_01034;product=hypothetical protein;protein_id=WP_007660994.1;transl_table=11;translation=length.232 NZ_ABJL02000007 GenBank exon 1189 1887 . + 1 Parent=BACINT_RS04715 NZ_ABJL02000007 GenBank gene 1890 3341 . + 1 ID=BACINT_RS04720;Name=BACINT_RS04720;old_locus_tag=BACINT_01035 NZ_ABJL02000007 GenBank mRNA 1890 3341 . + 1 ID=BACINT_RS04720;Parent=BACINT_RS04720 NZ_ABJL02000007 GenBank CDS 1890 3341 . + 1 ID=BACINT_RS04720;Parent=BACINT_RS04720;Name=BACINT_RS04720;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004292093.1;old_locus_tag=BACINT_01035;product=family 43 glycosylhydrolase;protein_id=WP_044154866.1;transl_table=11;translation=length.483 NZ_ABJL02000007 GenBank exon 1890 3341 . + 1 Parent=BACINT_RS04720 NZ_ABJL02000007 GenBank gene 3774 6899 . + 1 ID=BACINT_RS04725;Name=BACINT_RS04725;old_locus_tag=BACINT_01036 NZ_ABJL02000007 GenBank mRNA 3774 6899 . + 1 ID=BACINT_RS04725;Parent=BACINT_RS04725 NZ_ABJL02000007 GenBank CDS 3774 6899 . + 1 ID=BACINT_RS04725;Parent=BACINT_RS04725;Name=BACINT_RS04725;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007216410.1;old_locus_tag=BACINT_01036;product=TonB-dependent receptor;protein_id=WP_007660998.1;transl_table=11;translation=length.1041 NZ_ABJL02000007 GenBank exon 3774 6899 . + 1 Parent=BACINT_RS04725 NZ_ABJL02000007 GenBank gene 6921 8642 . + 1 ID=BACINT_RS04730;Name=BACINT_RS04730;old_locus_tag=BACINT_01037 NZ_ABJL02000007 GenBank mRNA 6921 8642 . + 1 ID=BACINT_RS04730;Parent=BACINT_RS04730 NZ_ABJL02000007 GenBank CDS 6921 8642 . + 1 ID=BACINT_RS04730;Parent=BACINT_RS04730;Name=BACINT_RS04730;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007661000.1;old_locus_tag=BACINT_01037;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_007661000.1;transl_table=11;translation=length.573 NZ_ABJL02000007 GenBank exon 6921 8642 . + 1 Parent=BACINT_RS04730 NZ_ABJL02000007 GenBank gene 9084 11000 . + 1 ID=BACINT_RS04735;Name=BACINT_RS04735;old_locus_tag=BACINT_01038 NZ_ABJL02000007 GenBank mRNA 9084 11000 . + 1 ID=BACINT_RS04735;Parent=BACINT_RS04735 NZ_ABJL02000007 GenBank CDS 9084 11000 . + 1 ID=BACINT_RS04735;Parent=BACINT_RS04735;Name=BACINT_RS04735;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007216413.1;old_locus_tag=BACINT_01038;product=hypothetical protein;protein_id=WP_021967024.1;transl_table=11;translation=length.638 NZ_ABJL02000007 GenBank exon 9084 11000 . + 1 Parent=BACINT_RS04735 NZ_ABJL02000007 GenBank gene 11011 12159 . + 1 ID=BACINT_RS04740;Name=BACINT_RS04740;old_locus_tag=BACINT_01039 NZ_ABJL02000007 GenBank mRNA 11011 12159 . + 1 ID=BACINT_RS04740;Parent=BACINT_RS04740 NZ_ABJL02000007 GenBank CDS 11011 12159 . + 1 ID=BACINT_RS04740;Parent=BACINT_RS04740;Name=BACINT_RS04740;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007216414.1;old_locus_tag=BACINT_01039;product=esterase;protein_id=WP_007661004.1;transl_table=11;translation=length.382 NZ_ABJL02000007 GenBank exon 11011 12159 . + 1 Parent=BACINT_RS04740 NZ_ABJL02000007 GenBank gene 12188 13168 . + 1 ID=BACINT_RS04745;Name=BACINT_RS04745;old_locus_tag=BACINT_01040 NZ_ABJL02000007 GenBank mRNA 12188 13168 . + 1 ID=BACINT_RS04745;Parent=BACINT_RS04745 NZ_ABJL02000007 GenBank CDS 12188 13168 . + 1 ID=BACINT_RS04745;Parent=BACINT_RS04745;Name=BACINT_RS04745;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007216415.1;old_locus_tag=BACINT_01040;product=alpha/beta hydrolase;protein_id=WP_044154778.1;transl_table=11;translation=length.326 NZ_ABJL02000007 GenBank exon 12188 13168 . + 1 Parent=BACINT_RS04745 NZ_ABJL02000007 GenBank gene 13304 14362 . + 1 ID=BACINT_RS04750;Name=BACINT_RS04750;old_locus_tag=BACINT_01041 NZ_ABJL02000007 GenBank mRNA 13304 14362 . + 1 ID=BACINT_RS04750;Parent=BACINT_RS04750 NZ_ABJL02000007 GenBank CDS 13304 14362 . + 1 ID=BACINT_RS04750;Parent=BACINT_RS04750;Name=BACINT_RS04750;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007661006.1;old_locus_tag=BACINT_01041;product=glycoside hydrolase family 43 protein;protein_id=WP_007661006.1;transl_table=11;translation=length.352 NZ_ABJL02000007 GenBank exon 13304 14362 . + 1 Parent=BACINT_RS04750 NZ_ABJL02000007 GenBank gene 14411 16999 . + 1 ID=BACINT_RS04755;Name=BACINT_RS04755;old_locus_tag=BACINT_01042 NZ_ABJL02000007 GenBank mRNA 14411 16999 . + 1 ID=BACINT_RS04755;Parent=BACINT_RS04755 NZ_ABJL02000007 GenBank CDS 14411 16999 . + 1 ID=BACINT_RS04755;Parent=BACINT_RS04755;Name=BACINT_RS04755;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007411427.1;old_locus_tag=BACINT_01042;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_007661007.1;transl_table=11;translation=length.862 NZ_ABJL02000007 GenBank exon 14411 16999 . + 1 Parent=BACINT_RS04755 NZ_ABJL02000007 GenBank gene 17100 18431 . + 1 ID=BACINT_RS04760;Name=BACINT_RS04760;old_locus_tag=BACINT_01043 NZ_ABJL02000007 GenBank mRNA 17100 18431 . + 1 ID=BACINT_RS04760;Parent=BACINT_RS04760 NZ_ABJL02000007 GenBank CDS 17100 18431 . + 1 ID=BACINT_RS04760;Parent=BACINT_RS04760;Name=BACINT_RS04760;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007661008.1;old_locus_tag=BACINT_01043;product=family 43 glycosylhydrolase;protein_id=WP_007661008.1;transl_table=11;translation=length.443 NZ_ABJL02000007 GenBank exon 17100 18431 . + 1 Parent=BACINT_RS04760 NZ_ABJL02000007 GenBank gene 18451 22545 . + 1 ID=BACINT_RS04765;Name=BACINT_RS04765;old_locus_tag=BACINT_01044 NZ_ABJL02000007 GenBank mRNA 18451 22545 . + 1 ID=BACINT_RS04765;Parent=BACINT_RS04765 NZ_ABJL02000007 GenBank CDS 18451 22545 . + 1 ID=BACINT_RS04765;Parent=BACINT_RS04765;Name=BACINT_RS04765;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007211514.1;old_locus_tag=BACINT_01044;product=response regulator;protein_id=WP_007661009.1;transl_table=11;translation=length.1364 NZ_ABJL02000007 GenBank exon 18451 22545 . + 1 Parent=BACINT_RS04765