##gff-version 3 ##sequence-region NZ_LR027880 1 19897 # conversion-by bp_genbank2gff3.pl # organism Roseburia intestinalis L1-82 # Note Roseburia intestinalis L1-82 chromosome 1, complete sequence. # date 20-MAR-2021 NZ_LR027880 GenBank chromosome 1 19897 . + 1 ID=NZ_LR027880;Alias=1;Dbxref=BioProject:PRJNA224116,taxon:536231;Name=NZ_LR027880;Note=Roseburia intestinalis L1-82 chromosome 1%2C complete sequence.,REFSEQ INFORMATION: The reference sequence is identical to LR027880.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2021 04:34:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset,GeneMarkS-2+\nAnnotation Software revision :: 5.1\nFeatures Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,\nrepeat_region\nGenes (total) :: 4,165\nCDSs (total) :: 4,074\nGenes (coding) :: 3,953\nCDSs (with protein) :: 3,953\nGenes (RNA) :: 91\nrRNAs :: 6,6,6 (5S,16S,23S)\ncomplete rRNAs :: 6,6,6 (5S,16S,23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 121\nCDSs (without protein) :: 121\nPseudo Genes (ambiguous residues) :: 0 of 121\nPseudo Genes (frameshifted) :: 31 of 121\nPseudo Genes (incomplete) :: 82 of 121\nPseudo Genes (internal stop) :: 23 of 121\nPseudo Genes (multiple problems) :: 13 of 121\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##;chromosome=1;comment1=REFSEQ INFORMATION: The reference sequence is identical to LR027880.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2021 04:34:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset%3B GeneMarkS-2+\nAnnotation Software revision :: 5.1\nFeatures Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B\nrepeat_region\nGenes (total) :: 4%2C165\nCDSs (total) :: 4%2C074\nGenes (coding) :: 3%2C953\nCDSs (with protein) :: 3%2C953\nGenes (RNA) :: 91\nrRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S)\ncomplete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 121\nCDSs (without protein) :: 121\nPseudo Genes (ambiguous residues) :: 0 of 121\nPseudo Genes (frameshifted) :: 31 of 121\nPseudo Genes (incomplete) :: 82 of 121\nPseudo Genes (internal stop) :: 23 of 121\nPseudo Genes (multiple problems) :: 13 of 121\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##;date=20-MAR-2021;mol_type=genomic DNA;organism=Roseburia intestinalis L1-82;strain=L1-82;type_material=type strain of Roseburia intestinalis NZ_LR027880 GenBank gene 1 957 . - 1 ID=RIL182_RS20205;Dbxref=GeneID:61435214;Name=RIL182_RS20205;old_locus_tag=RIL182_03999 NZ_LR027880 GenBank mRNA 1 957 . - 1 ID=RIL182_RS20205;Parent=RIL182_RS20205 NZ_LR027880 GenBank CDS 1 957 . - 1 ID=RIL182_RS20205;Parent=RIL182_RS20205;Dbxref=GeneID:61435214;Name=RIL182_RS20205;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006856630.1;old_locus_tag=RIL182_03999;product=carbohydrate kinase;protein_id=WP_006856630.1;transl_table=11;translation=length.318 NZ_LR027880 GenBank exon 1 957 . - 1 Parent=RIL182_RS20205 NZ_LR027880 GenBank gene 1523 3775 . - 1 ID=RIL182_RS20210;Dbxref=GeneID:61435215;Name=RIL182_RS20210;old_locus_tag=RIL182_04000 NZ_LR027880 GenBank mRNA 1523 3775 . - 1 ID=RIL182_RS20210;Parent=RIL182_RS20210 NZ_LR027880 GenBank CDS 1523 3775 . - 1 ID=RIL182_RS20210;Parent=RIL182_RS20210;Dbxref=GeneID:61435215;eC_number=3.2.1.22;Name=RIL182_RS20210;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002565117.1;old_locus_tag=RIL182_04000;product=alpha-galactosidase;protein_id=WP_006856629.1;transl_table=11;translation=length.750 NZ_LR027880 GenBank exon 1523 3775 . - 1 Parent=RIL182_RS20210 NZ_LR027880 GenBank gene 3800 5482 . - 1 ID=RIL182_RS20215;Dbxref=GeneID:61435216;Name=RIL182_RS20215;old_locus_tag=RIL182_04001 NZ_LR027880 GenBank mRNA 3800 5482 . - 1 ID=RIL182_RS20215;Parent=RIL182_RS20215 NZ_LR027880 GenBank CDS 3800 5482 . - 1 ID=RIL182_RS20215;Parent=RIL182_RS20215;Dbxref=GeneID:61435216;Name=RIL182_RS20215;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015561145.1;old_locus_tag=RIL182_04001;product=alpha-glucosidase;protein_id=WP_044998831.1;transl_table=11;translation=length.560 NZ_LR027880 GenBank exon 3800 5482 . - 1 Parent=RIL182_RS20215 NZ_LR027880 GenBank gene 5564 6541 . - 1 ID=RIL182_RS20220;Dbxref=GeneID:61435217;Name=RIL182_RS20220;old_locus_tag=RIL182_04002 NZ_LR027880 GenBank mRNA 5564 6541 . - 1 ID=RIL182_RS20220;Parent=RIL182_RS20220 NZ_LR027880 GenBank CDS 5564 6541 . - 1 ID=RIL182_RS20220;Parent=RIL182_RS20220;Dbxref=GeneID:61435217;Name=RIL182_RS20220;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015561144.1;old_locus_tag=RIL182_04002;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_006856627.1;transl_table=11;translation=length.325 NZ_LR027880 GenBank exon 5564 6541 . - 1 Parent=RIL182_RS20220 NZ_LR027880 GenBank gene 6529 8220 . - 1 ID=RIL182_RS20225;Dbxref=GeneID:61435218;Name=RIL182_RS20225;old_locus_tag=RIL182_04003 NZ_LR027880 GenBank mRNA 6529 8220 . - 1 ID=RIL182_RS20225;Parent=RIL182_RS20225 NZ_LR027880 GenBank CDS 6529 8220 . - 1 ID=RIL182_RS20225;Parent=RIL182_RS20225;Dbxref=GeneID:61435218;Name=RIL182_RS20225;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015521793.1;old_locus_tag=RIL182_04003;product=glycoside hydrolase family 32 protein;protein_id=WP_006856626.1;transl_table=11;translation=length.563 NZ_LR027880 GenBank exon 6529 8220 . - 1 Parent=RIL182_RS20225 NZ_LR027880 GenBank gene 8396 9835 . - 1 ID=RIL182_RS20230;Dbxref=GeneID:61435219;Name=gtfA;locus_tag=RIL182_RS20230;old_locus_tag=RIL182_04004 NZ_LR027880 GenBank mRNA 8396 9835 . - 1 ID=RIL182_RS20230;Parent=RIL182_RS20230 NZ_LR027880 GenBank CDS 8396 9835 . - 1 ID=RIL182_RS20230;Parent=RIL182_RS20230;Dbxref=GeneID:61435219;eC_number=2.4.1.7;Name=gtfA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009254403.1;locus_tag=RIL182_RS20230;old_locus_tag=RIL182_04004;product=sucrose phosphorylase;protein_id=WP_044998851.1;transl_table=11;translation=length.479 NZ_LR027880 GenBank exon 8396 9835 . - 1 Parent=RIL182_RS20230 NZ_LR027880 GenBank gene 9918 10781 . - 1 ID=RIL182_RS20235;Dbxref=GeneID:61435220;Name=RIL182_RS20235;old_locus_tag=RIL182_04005 NZ_LR027880 GenBank mRNA 9918 10781 . - 1 ID=RIL182_RS20235;Parent=RIL182_RS20235 NZ_LR027880 GenBank CDS 9918 10781 . - 1 ID=RIL182_RS20235;Parent=RIL182_RS20235;Dbxref=GeneID:61435220;Name=RIL182_RS20235;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006856624.1;old_locus_tag=RIL182_04005;product=carbohydrate ABC transporter permease;protein_id=WP_006856624.1;transl_table=11;translation=length.287 NZ_LR027880 GenBank exon 9918 10781 . - 1 Parent=RIL182_RS20235 NZ_LR027880 GenBank gene 10781 11659 . - 1 ID=RIL182_RS20240;Dbxref=GeneID:61435221;Name=RIL182_RS20240;old_locus_tag=RIL182_04006 NZ_LR027880 GenBank mRNA 10781 11659 . - 1 ID=RIL182_RS20240;Parent=RIL182_RS20240 NZ_LR027880 GenBank CDS 10781 11659 . - 1 ID=RIL182_RS20240;Parent=RIL182_RS20240;Dbxref=GeneID:61435221;Name=RIL182_RS20240;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006442166.1;old_locus_tag=RIL182_04006;product=sugar ABC transporter permease;protein_id=WP_006856623.1;transl_table=11;translation=length.292 NZ_LR027880 GenBank exon 10781 11659 . - 1 Parent=RIL182_RS20240 NZ_LR027880 GenBank gene 11793 13187 . - 1 ID=RIL182_RS20245;Dbxref=GeneID:61435222;Name=RIL182_RS20245;old_locus_tag=RIL182_04007 NZ_LR027880 GenBank mRNA 11793 13187 . - 1 ID=RIL182_RS20245;Parent=RIL182_RS20245 NZ_LR027880 GenBank CDS 11793 13187 . - 1 ID=RIL182_RS20245;Parent=RIL182_RS20245;Dbxref=GeneID:61435222;Name=RIL182_RS20245;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015521789.1;old_locus_tag=RIL182_04007;product=ABC transporter substrate-binding protein;protein_id=WP_006856622.1;transl_table=11;translation=length.464 NZ_LR027880 GenBank exon 11793 13187 . - 1 Parent=RIL182_RS20245 NZ_LR027880 GenBank gene 13621 17691 . - 1 ID=RIL182_RS20250;Dbxref=GeneID:61435223;Name=RIL182_RS20250;old_locus_tag=RIL182_04008 NZ_LR027880 GenBank mRNA 13621 17691 . - 1 ID=RIL182_RS20250;Parent=RIL182_RS20250 NZ_LR027880 GenBank CDS 13621 17691 . - 1 ID=RIL182_RS20250;Parent=RIL182_RS20250;Dbxref=GeneID:61435223;Name=RIL182_RS20250;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006856621.1;old_locus_tag=RIL182_04008;product=endo-1%2C4-beta-xylanase;protein_id=WP_006856621.1;transl_table=11;translation=length.1356 NZ_LR027880 GenBank exon 13621 17691 . - 1 Parent=RIL182_RS20250 NZ_LR027880 GenBank gene 18044 19897 . - 1 ID=RIL182_RS20255;Dbxref=GeneID:61435224;Name=RIL182_RS20255;old_locus_tag=RIL182_04009 NZ_LR027880 GenBank mRNA 18044 19897 . - 1 ID=RIL182_RS20255;Parent=RIL182_RS20255 NZ_LR027880 GenBank CDS 18044 19897 . - 1 ID=RIL182_RS20255;Parent=RIL182_RS20255;Dbxref=GeneID:61435224;Name=RIL182_RS20255;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015561141.1;old_locus_tag=RIL182_04009;product=glycosyl hydrolase 53 family protein;protein_id=WP_006856619.1;transl_table=11;translation=length.617 NZ_LR027880 GenBank exon 18044 19897 . - 1 Parent=RIL182_RS20255