##gff-version 3 ##sequence-region NZ_KB290676 1 5912 # conversion-by bp_genbank2gff3.pl # organism Anaerostipes hadrus DSM 3319 # Note Anaerostipes hadrus DSM 3319 Scfld194, whole genome shotgun sequence. # date 19-MAR-2021 NZ_KB290676 GenBank region 1 5912 . + 1 ID=NZ_KB290676;Dbxref=BioProject:PRJNA224116,HMP:0369,taxon:649757;Name=NZ_KB290676;Note=Anaerostipes hadrus DSM 3319 Scfld194%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to KB290676.1. Anaerostipes hadrus DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology,University of Guelph,Ontario,Canada),and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56),psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI),National Institutes of Health (NIH) is funding the sequence characterization of the Anaerostipes hadrus DSM 3319 genome. Eubacterium hadrum DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology,University of Guelph,Ontario,Canada),and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56),psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI),National Institutes of Health (NIH) is funding the sequence characterization of the Eubacterium hadrum DSM 3319 genome. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: Velvet v. 1.1.04\nGenome Coverage :: 103x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to KB290676.1. Anaerostipes hadrus DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology%2C University of Guelph%2C Ontario%2C Canada)%2C and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56)%2C psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI)%2C National Institutes of Health (NIH) is funding the sequence characterization of the Anaerostipes hadrus DSM 3319 genome. Eubacterium hadrum DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology%2C University of Guelph%2C Ontario%2C Canada)%2C and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56)%2C psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI)%2C National Institutes of Health (NIH) is funding the sequence characterization of the Eubacterium hadrum DSM 3319 genome. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: Velvet v. 1.1.04\nGenome Coverage :: 103x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;culture_collection=ATCC:29173;date=19-MAR-2021;host=Homo sapiens;isolation_source=stool%2C GI tract;mol_type=genomic DNA;organism=Anaerostipes hadrus DSM 3319;strain=DSM 3319;submitter_seqid=Scfld194;type_material=type strain of Anaerostipes hadrus NZ_KB290676 GenBank gene 1 1386 . - 1 ID=HMPREF0369_RS08180;Name=HMPREF0369_RS08180;old_locus_tag=HMPREF0369_01715 NZ_KB290676 GenBank mRNA 1 1386 . - 1 ID=HMPREF0369_RS08180;Parent=HMPREF0369_RS08180 NZ_KB290676 GenBank CDS 1 1386 . - 1 ID=HMPREF0369_RS08180;Parent=HMPREF0369_RS08180;Name=HMPREF0369_RS08180;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008394278.1;old_locus_tag=HMPREF0369_01715;product=glycoside hydrolase family 32 protein;protein_id=WP_009203922.1;transl_table=11;translation=length.461 NZ_KB290676 GenBank exon 1 1386 . - 1 Parent=HMPREF0369_RS08180 NZ_KB290676 GenBank gene 1388 3295 . - 1 ID=HMPREF0369_RS08185;Name=HMPREF0369_RS08185;old_locus_tag=HMPREF0369_01716 NZ_KB290676 GenBank mRNA 1388 3295 . - 1 ID=HMPREF0369_RS08185;Parent=HMPREF0369_RS08185 NZ_KB290676 GenBank CDS 1388 3295 . - 1 ID=HMPREF0369_RS08185;Parent=HMPREF0369_RS08185;Name=HMPREF0369_RS08185;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008394277.1;old_locus_tag=HMPREF0369_01716;product=PTS sugar transporter subunit IIBCA;protein_id=WP_008394277.1;transl_table=11;translation=length.635 NZ_KB290676 GenBank exon 1388 3295 . - 1 Parent=HMPREF0369_RS08185 NZ_KB290676 GenBank gene 3325 4716 . - 1 ID=HMPREF0369_RS08190;Name=HMPREF0369_RS08190;old_locus_tag=HMPREF0369_01717 NZ_KB290676 GenBank mRNA 3325 4716 . - 1 ID=HMPREF0369_RS08190;Parent=HMPREF0369_RS08190 NZ_KB290676 GenBank CDS 3325 4716 . - 1 ID=HMPREF0369_RS08190;Parent=HMPREF0369_RS08190;Name=HMPREF0369_RS08190;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009203923.1;old_locus_tag=HMPREF0369_01717;product=family 43 glycosylhydrolase;protein_id=WP_009203923.1;transl_table=11;translation=length.463 NZ_KB290676 GenBank exon 3325 4716 . - 1 Parent=HMPREF0369_RS08190 NZ_KB290676 GenBank gene 4935 5912 . - 1 ID=HMPREF0369_RS08195;Name=HMPREF0369_RS08195;old_locus_tag=HMPREF0369_01718 NZ_KB290676 GenBank mRNA 4935 5912 . - 1 ID=HMPREF0369_RS08195;Parent=HMPREF0369_RS08195 NZ_KB290676 GenBank CDS 4935 5912 . - 1 ID=HMPREF0369_RS08195;Parent=HMPREF0369_RS08195;Name=HMPREF0369_RS08195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008394275.1;old_locus_tag=HMPREF0369_01718;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_008394275.1;transl_table=11;translation=length.325 NZ_KB290676 GenBank exon 4935 5912 . - 1 Parent=HMPREF0369_RS08195