##gff-version 3 ##sequence-region NZ_KB290636 1 7838 # conversion-by bp_genbank2gff3.pl # organism Anaerostipes hadrus DSM 3319 # Note Anaerostipes hadrus DSM 3319 Scfld13, whole genome shotgun sequence. # date 19-MAR-2021 NZ_KB290636 GenBank region 1 7838 . + 1 ID=NZ_KB290636;Dbxref=BioProject:PRJNA224116,HMP:0369,taxon:649757;Name=NZ_KB290636;Note=Anaerostipes hadrus DSM 3319 Scfld13%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to KB290636.1. Anaerostipes hadrus DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology,University of Guelph,Ontario,Canada),and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56),psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI),National Institutes of Health (NIH) is funding the sequence characterization of the Anaerostipes hadrus DSM 3319 genome. Eubacterium hadrum DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology,University of Guelph,Ontario,Canada),and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56),psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI),National Institutes of Health (NIH) is funding the sequence characterization of the Eubacterium hadrum DSM 3319 genome. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: Velvet v. 1.1.04\nGenome Coverage :: 103x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to KB290636.1. Anaerostipes hadrus DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology%2C University of Guelph%2C Ontario%2C Canada)%2C and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56)%2C psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI)%2C National Institutes of Health (NIH) is funding the sequence characterization of the Anaerostipes hadrus DSM 3319 genome. Eubacterium hadrum DSM 3319 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. The sequenced strain was obtained directly from ATCC (ATCC 29173). Source DNA was prepared by Michelle Daigneault and Emma Allen-Vercoe (Department of Molecular and Cellular Biology%2C University of Guelph%2C Ontario%2C Canada)%2C and was funded by the NHGRI (through an HMP Technology Development Grant - 1R21HG005811 - 01). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56)%2C psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI)%2C National Institutes of Health (NIH) is funding the sequence characterization of the Eubacterium hadrum DSM 3319 genome. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: Velvet v. 1.1.04\nGenome Coverage :: 103x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;culture_collection=ATCC:29173;date=19-MAR-2021;host=Homo sapiens;isolation_source=stool%2C GI tract;mol_type=genomic DNA;organism=Anaerostipes hadrus DSM 3319;strain=DSM 3319;submitter_seqid=Scfld13;type_material=type strain of Anaerostipes hadrus NZ_KB290636 GenBank gene 1 981 . + 1 ID=HMPREF0369_RS01715;Name=HMPREF0369_RS01715;old_locus_tag=HMPREF0369_00355 NZ_KB290636 GenBank mRNA 1 981 . + 1 ID=HMPREF0369_RS01715;Parent=HMPREF0369_RS01715 NZ_KB290636 GenBank CDS 1 981 . + 1 ID=HMPREF0369_RS01715;Parent=HMPREF0369_RS01715;Name=HMPREF0369_RS01715;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008394372.1;old_locus_tag=HMPREF0369_00355;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_009202970.1;transl_table=11;translation=length.326 NZ_KB290636 GenBank exon 1 981 . + 1 Parent=HMPREF0369_RS01715 NZ_KB290636 GenBank gene 1393 2553 . - 1 ID=HMPREF0369_RS01720;Name=HMPREF0369_RS01720;old_locus_tag=HMPREF0369_00356 NZ_KB290636 GenBank mRNA 1393 2553 . - 1 ID=HMPREF0369_RS01720;Parent=HMPREF0369_RS01720 NZ_KB290636 GenBank CDS 1393 2553 . - 1 ID=HMPREF0369_RS01720;Parent=HMPREF0369_RS01720;Name=HMPREF0369_RS01720;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005609868.1;old_locus_tag=HMPREF0369_00356;product=transposase;protein_id=WP_040343861.1;transl_table=11;translation=length.386 NZ_KB290636 GenBank exon 1393 2553 . - 1 Parent=HMPREF0369_RS01720 NZ_KB290636 GenBank pseudogenic_exon 2465 3139 . - 1 ID=HMPREF0369_RS01725;Name=HMPREF0369_RS01725;Note=internal stop%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015979000.1;product=IS607 family transposase;pseudo=_no_value;transl_table=11 NZ_KB290636 GenBank pseudogene 2465 3139 . - 1 ID=HMPREF0369_RS01725.pseudogene;Alias=HMPREF0369_RS01725;Name=HMPREF0369_RS01725;pseudo=_no_value NZ_KB290636 GenBank gene 3448 5373 . + 1 ID=HMPREF0369_RS01735;Name=HMPREF0369_RS01735;old_locus_tag=HMPREF0369_00358 NZ_KB290636 GenBank mRNA 3448 5373 . + 1 ID=HMPREF0369_RS01735;Parent=HMPREF0369_RS01735 NZ_KB290636 GenBank CDS 3448 5373 . + 1 ID=HMPREF0369_RS01735;Parent=HMPREF0369_RS01735;eC_number=2.7.1.211;Name=HMPREF0369_RS01735;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009202973.1;old_locus_tag=HMPREF0369_00358;product=sucrose-specific PTS transporter subunit IIBC;protein_id=WP_009202973.1;transl_table=11;translation=length.641 NZ_KB290636 GenBank exon 3448 5373 . + 1 Parent=HMPREF0369_RS01735 NZ_KB290636 GenBank gene 5408 6874 . + 1 ID=HMPREF0369_RS01740;Name=HMPREF0369_RS01740;old_locus_tag=HMPREF0369_00359 NZ_KB290636 GenBank mRNA 5408 6874 . + 1 ID=HMPREF0369_RS01740;Parent=HMPREF0369_RS01740 NZ_KB290636 GenBank CDS 5408 6874 . + 1 ID=HMPREF0369_RS01740;Parent=HMPREF0369_RS01740;Name=HMPREF0369_RS01740;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009202974.1;old_locus_tag=HMPREF0369_00359;product=glycoside hydrolase family 32 protein;protein_id=WP_009202974.1;transl_table=11;translation=length.488 NZ_KB290636 GenBank exon 5408 6874 . + 1 Parent=HMPREF0369_RS01740 NZ_KB290636 GenBank gene 6864 7838 . + 1 ID=HMPREF0369_RS01745;Name=HMPREF0369_RS01745;old_locus_tag=HMPREF0369_00360 NZ_KB290636 GenBank mRNA 6864 7838 . + 1 ID=HMPREF0369_RS01745;Parent=HMPREF0369_RS01745 NZ_KB290636 GenBank CDS 6864 7838 . + 1 ID=HMPREF0369_RS01745;Parent=HMPREF0369_RS01745;Name=HMPREF0369_RS01745;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008394375.1;old_locus_tag=HMPREF0369_00360;product=carbohydrate kinase;protein_id=WP_008394375.1;transl_table=11;translation=length.324 NZ_KB290636 GenBank exon 6864 7838 . + 1 Parent=HMPREF0369_RS01745