##gff-version 3 ##sequence-region JABKKF010000013 1 43779 # conversion-by bp_genbank2gff3.pl # organism Prevotella sp. PMUR # Note Prevotella sp. PMUR PMUR_13, whole genome shotgun sequence. # date 25-MAY-2020 JABKKF010000013 GenBank region 1 43779 . + 1 ID=JABKKF010000013;Dbxref=BioProject:PRJNA630669,taxon:2736290;Name=JABKKF010000013;Note=Prevotella sp. PMUR PMUR_13%2C whole genome shotgun sequence.,The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2017\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 410.58x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##;collected_by=Thiemann;collection_date=Jul-2017;comment1=The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2017\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 410.58x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##;country=Germany: Braunschweig;culture_collection=DSM:103722;date=25-MAY-2020;host=Mus musculus;isolation_source=feces;mol_type=genomic DNA;organism=Prevotella sp. PMUR;strain=PMUR;submitter_seqid=PMUR_13 JABKKF010000013 GenBank gene 1 1650 . - 1 ID=HPS56_11565;Name=HPS56_11565 JABKKF010000013 GenBank mRNA 1 1650 . - 1 ID=HPS56_11565;Parent=HPS56_11565 JABKKF010000013 GenBank CDS 1 1650 . - 1 ID=HPS56_11565;Parent=HPS56_11565;Name=HPS56_11565;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007173848.1;product=glycoside hydrolase family 43 protein;protein_id=NPD92966.1;transl_table=11;translation=length.549 JABKKF010000013 GenBank exon 1 1650 . - 1 Parent=HPS56_11565 JABKKF010000013 GenBank gene 1711 4212 . - 1 ID=HPS56_11570;Name=HPS56_11570 JABKKF010000013 GenBank mRNA 1711 4212 . - 1 ID=HPS56_11570;Parent=HPS56_11570 JABKKF010000013 GenBank CDS 1711 4212 . - 1 ID=HPS56_11570;Parent=HPS56_11570;Name=HPS56_11570;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007173837.1;product=glycosyhydrolase;protein_id=NPD92967.1;transl_table=11;translation=length.833 JABKKF010000013 GenBank exon 1711 4212 . - 1 Parent=HPS56_11570 JABKKF010000013 GenBank gene 4227 6323 . - 1 ID=HPS56_11575;Name=HPS56_11575 JABKKF010000013 GenBank mRNA 4227 6323 . - 1 ID=HPS56_11575;Parent=HPS56_11575 JABKKF010000013 GenBank CDS 4227 6323 . - 1 ID=HPS56_11575;Parent=HPS56_11575;Name=HPS56_11575;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019397710.1;product=glycosyl hydrolase 43 family protein;protein_id=NPD92968.1;transl_table=11;translation=length.698 JABKKF010000013 GenBank exon 4227 6323 . - 1 Parent=HPS56_11575 JABKKF010000013 GenBank gene 6360 8264 . - 1 ID=HPS56_11580;Name=HPS56_11580 JABKKF010000013 GenBank mRNA 6360 8264 . - 1 ID=HPS56_11580;Parent=HPS56_11580 JABKKF010000013 GenBank CDS 6360 8264 . - 1 ID=HPS56_11580;Parent=HPS56_11580;Name=HPS56_11580;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018463117.1;product=glycoside hydrolase family 97 protein;protein_id=NPD92969.1;transl_table=11;translation=length.634 JABKKF010000013 GenBank exon 6360 8264 . - 1 Parent=HPS56_11580 JABKKF010000013 GenBank gene 8319 9689 . - 1 ID=HPS56_11585;Name=HPS56_11585 JABKKF010000013 GenBank mRNA 8319 9689 . - 1 ID=HPS56_11585;Parent=HPS56_11585 JABKKF010000013 GenBank CDS 8319 9689 . - 1 ID=HPS56_11585;Parent=HPS56_11585;Name=HPS56_11585;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018463114.1;product=family 43 glycosylhydrolase;protein_id=NPD92970.1;transl_table=11;translation=length.456 JABKKF010000013 GenBank exon 8319 9689 . - 1 Parent=HPS56_11585 JABKKF010000013 GenBank gene 9696 11561 . - 1 ID=HPS56_11590;Name=HPS56_11590 JABKKF010000013 GenBank mRNA 9696 11561 . - 1 ID=HPS56_11590;Parent=HPS56_11590 JABKKF010000013 GenBank CDS 9696 11561 . - 1 ID=HPS56_11590;Parent=HPS56_11590;Name=HPS56_11590;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012958.1,COORDINATES: similar to AA sequence:RefSeq:WP_018463040.1;product=esterase;protein_id=NPD92971.1;transl_table=11;translation=length.621 JABKKF010000013 GenBank exon 9696 11561 . - 1 Parent=HPS56_11590 JABKKF010000013 GenBank gene 11577 14033 . - 1 ID=HPS56_11595;Name=HPS56_11595 JABKKF010000013 GenBank mRNA 11577 14033 . - 1 ID=HPS56_11595;Parent=HPS56_11595 JABKKF010000013 GenBank CDS 11577 14033 . - 1 ID=HPS56_11595;Parent=HPS56_11595;Name=HPS56_11595;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006844502.1;product=glycoside hydrolase family 95 protein;protein_id=NPD92972.1;transl_table=11;translation=length.818 JABKKF010000013 GenBank exon 11577 14033 . - 1 Parent=HPS56_11595 JABKKF010000013 GenBank gene 14043 16565 . - 1 ID=HPS56_11600;Name=HPS56_11600 JABKKF010000013 GenBank mRNA 14043 16565 . - 1 ID=HPS56_11600;Parent=HPS56_11600 JABKKF010000013 GenBank CDS 14043 16565 . - 1 ID=HPS56_11600;Parent=HPS56_11600;Name=HPS56_11600;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF027309.1%2CHMM:NF036499.1;product=hypothetical protein;protein_id=NPD92973.1;transl_table=11;translation=length.840 JABKKF010000013 GenBank exon 14043 16565 . - 1 Parent=HPS56_11600 JABKKF010000013 GenBank pseudogenic_exon 17708 19258 . - 1 ID=HPS56_11605;Name=HPS56_11605;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007175107.1;product=glycosyl hydrolase 43 family protein;pseudo=_no_value;transl_table=11 JABKKF010000013 GenBank pseudogene 17708 19258 . - 1 ID=HPS56_11605.pseudogene;Alias=HPS56_11605;Name=HPS56_11605;pseudo=_no_value JABKKF010000013 GenBank gene 19440 22811 . - 1 ID=HPS56_11610;Name=HPS56_11610 JABKKF010000013 GenBank mRNA 19440 22811 . - 1 ID=HPS56_11610;Parent=HPS56_11610 JABKKF010000013 GenBank CDS 19440 22811 . - 1 ID=HPS56_11610;Parent=HPS56_11610;Name=HPS56_11610;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=NPD92974.1;transl_table=11;translation=length.1123 JABKKF010000013 GenBank exon 19440 22811 . - 1 Parent=HPS56_11610 JABKKF010000013 GenBank gene 23319 27197 . - 1 ID=HPS56_11615;Name=HPS56_11615 JABKKF010000013 GenBank mRNA 23319 27197 . - 1 ID=HPS56_11615;Parent=HPS56_11615 JABKKF010000013 GenBank CDS 23319 27197 . - 1 ID=HPS56_11615;Parent=HPS56_11615;Name=HPS56_11615;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012301.1%2CHMM:NF012722.1%2CHMM:NF014567.1%2C HMM:NF019135.1%2CHMM:NF024242.1;product=response regulator;protein_id=NPD92975.1;transl_table=11;translation=length.1292 JABKKF010000013 GenBank exon 23319 27197 . - 1 Parent=HPS56_11615 JABKKF010000013 GenBank gene 27592 28833 . - 1 ID=HPS56_11620;Name=HPS56_11620 JABKKF010000013 GenBank mRNA 27592 28833 . - 1 ID=HPS56_11620;Parent=HPS56_11620 JABKKF010000013 GenBank CDS 27592 28833 . - 1 ID=HPS56_11620;Parent=HPS56_11620;Name=HPS56_11620;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF021982.1;product=hypothetical protein;protein_id=NPD92976.1;transl_table=11;translation=length.413 JABKKF010000013 GenBank exon 27592 28833 . - 1 Parent=HPS56_11620 JABKKF010000013 GenBank gene 28862 30370 . - 1 ID=HPS56_11625;Name=HPS56_11625 JABKKF010000013 GenBank mRNA 28862 30370 . - 1 ID=HPS56_11625;Parent=HPS56_11625 JABKKF010000013 GenBank CDS 28862 30370 . - 1 ID=HPS56_11625;Parent=HPS56_11625;Name=HPS56_11625;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005846597.1;product=endo-1%2C4-beta-xylanase xyn5A;protein_id=NPD92977.1;transl_table=11;translation=length.502 JABKKF010000013 GenBank exon 28862 30370 . - 1 Parent=HPS56_11625 JABKKF010000013 GenBank gene 30367 32043 . - 1 ID=HPS56_11630;Name=HPS56_11630 JABKKF010000013 GenBank mRNA 30367 32043 . - 1 ID=HPS56_11630;Parent=HPS56_11630 JABKKF010000013 GenBank CDS 30367 32043 . - 1 ID=HPS56_11630;Parent=HPS56_11630;Name=HPS56_11630;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005846599.1;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=NPD92978.1;transl_table=11;translation=length.558 JABKKF010000013 GenBank exon 30367 32043 . - 1 Parent=HPS56_11630 JABKKF010000013 GenBank gene 32053 35208 . - 1 ID=HPS56_11635;Name=HPS56_11635 JABKKF010000013 GenBank mRNA 32053 35208 . - 1 ID=HPS56_11635;Parent=HPS56_11635 JABKKF010000013 GenBank CDS 32053 35208 . - 1 ID=HPS56_11635;Parent=HPS56_11635;Name=HPS56_11635;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005846600.1;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=NPD92979.1;transl_table=11;translation=length.1051 JABKKF010000013 GenBank exon 32053 35208 . - 1 Parent=HPS56_11635 JABKKF010000013 GenBank gene 35208 36827 . - 1 ID=HPS56_11640;Name=HPS56_11640 JABKKF010000013 GenBank mRNA 35208 36827 . - 1 ID=HPS56_11640;Parent=HPS56_11640 JABKKF010000013 GenBank CDS 35208 36827 . - 1 ID=HPS56_11640;Parent=HPS56_11640;Name=HPS56_11640;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005846602.1;product=hypothetical protein;protein_id=NPD92980.1;transl_table=11;translation=length.539 JABKKF010000013 GenBank exon 35208 36827 . - 1 Parent=HPS56_11640 JABKKF010000013 GenBank gene 36868 38796 . - 1 ID=HPS56_11645;Name=HPS56_11645 JABKKF010000013 GenBank mRNA 36868 38796 . - 1 ID=HPS56_11645;Parent=HPS56_11645 JABKKF010000013 GenBank CDS 36868 38796 . - 1 ID=HPS56_11645;Parent=HPS56_11645;Name=HPS56_11645;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008620378.1;product=fasciclin domain-containing protein;protein_id=NPD92981.1;transl_table=11;translation=length.642 JABKKF010000013 GenBank exon 36868 38796 . - 1 Parent=HPS56_11645 JABKKF010000013 GenBank gene 38828 40513 . - 1 ID=HPS56_11650;Name=HPS56_11650 JABKKF010000013 GenBank mRNA 38828 40513 . - 1 ID=HPS56_11650;Parent=HPS56_11650 JABKKF010000013 GenBank CDS 38828 40513 . - 1 ID=HPS56_11650;Parent=HPS56_11650;Name=HPS56_11650;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008620376.1;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=NPD92982.1;transl_table=11;translation=length.561 JABKKF010000013 GenBank exon 38828 40513 . - 1 Parent=HPS56_11650 JABKKF010000013 GenBank gene 40525 43779 . - 1 ID=HPS56_11655;Name=HPS56_11655 JABKKF010000013 GenBank mRNA 40525 43779 . - 1 ID=HPS56_11655;Parent=HPS56_11655 JABKKF010000013 GenBank CDS 40525 43779 . - 1 ID=HPS56_11655;Parent=HPS56_11655;Name=HPS56_11655;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008626262.1;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=NPD92983.1;transl_table=11;translation=length.1084 JABKKF010000013 GenBank exon 40525 43779 . - 1 Parent=HPS56_11655