##gff-version 3 ##sequence-region JABKKF010000001 1 31120 # conversion-by bp_genbank2gff3.pl # organism Prevotella sp. PMUR # Note Prevotella sp. PMUR PMUR_1, whole genome shotgun sequence. # date 25-MAY-2020 JABKKF010000001 GenBank region 1 31120 . + 1 ID=JABKKF010000001;Dbxref=BioProject:PRJNA630669,taxon:2736290;Name=JABKKF010000001;Note=Prevotella sp. PMUR PMUR_1%2C whole genome shotgun sequence.,The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2017\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 410.58x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##;collected_by=Thiemann;collection_date=Jul-2017;comment1=The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2017\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 410.58x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##;country=Germany: Braunschweig;culture_collection=DSM:103722;date=25-MAY-2020;host=Mus musculus;isolation_source=feces;mol_type=genomic DNA;organism=Prevotella sp. PMUR;strain=PMUR;submitter_seqid=PMUR_1 JABKKF010000001 GenBank gene 1 28 . + 1 ID=HPS56_01015;Name=HPS56_01015 JABKKF010000001 GenBank mRNA 1 28 . + 1 ID=HPS56_01015;Parent=HPS56_01015 JABKKF010000001 GenBank CDS 1 28 . + 1 ID=HPS56_01015;Parent=HPS56_01015;Name=HPS56_01015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=2;inference=COORDINATES: protein motif:HMM:NF025312.1;product=hypothetical protein;protein_id=NPD90954.1;transl_table=11;translation=length.160 JABKKF010000001 GenBank exon 1 28 . + 1 Parent=HPS56_01015 JABKKF010000001 GenBank gene 1 2025 . + 1 ID=HPS56_01020;Name=HPS56_01020 JABKKF010000001 GenBank mRNA 1 2025 . + 1 ID=HPS56_01020;Parent=HPS56_01020 JABKKF010000001 GenBank CDS 1 2025 . + 1 ID=HPS56_01020;Parent=HPS56_01020;Name=HPS56_01020;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012801.1%2CHMM:NF019335.1;product=TonB-dependent receptor;protein_id=NPD90955.1;transl_table=11;translation=length.674 JABKKF010000001 GenBank exon 1 2025 . + 1 Parent=HPS56_01020 JABKKF010000001 GenBank gene 2022 6269 . + 1 ID=HPS56_01025;Name=HPS56_01025 JABKKF010000001 GenBank mRNA 2022 6269 . + 1 ID=HPS56_01025;Parent=HPS56_01025 JABKKF010000001 GenBank CDS 2022 6269 . + 1 ID=HPS56_01025;Parent=HPS56_01025;Name=HPS56_01025;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006953352.1;product=cobaltochelatase subunit CobN;protein_id=NPD90956.1;transl_table=11;translation=length.1415 JABKKF010000001 GenBank exon 2022 6269 . + 1 Parent=HPS56_01025 JABKKF010000001 GenBank gene 6269 6955 . + 1 ID=HPS56_01030;Name=HPS56_01030 JABKKF010000001 GenBank mRNA 6269 6955 . + 1 ID=HPS56_01030;Parent=HPS56_01030 JABKKF010000001 GenBank CDS 6269 6955 . + 1 ID=HPS56_01030;Parent=HPS56_01030;Name=HPS56_01030;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=NPD90957.1;transl_table=11;translation=length.228 JABKKF010000001 GenBank exon 6269 6955 . + 1 Parent=HPS56_01030 JABKKF010000001 GenBank gene 6952 7557 . + 1 ID=HPS56_01035;Name=HPS56_01035 JABKKF010000001 GenBank mRNA 6952 7557 . + 1 ID=HPS56_01035;Parent=HPS56_01035 JABKKF010000001 GenBank CDS 6952 7557 . + 1 ID=HPS56_01035;Parent=HPS56_01035;Name=HPS56_01035;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008763053.1;product=MotA/TolQ/ExbB proton channel family protein;protein_id=NPD90958.1;transl_table=11;translation=length.201 JABKKF010000001 GenBank exon 6952 7557 . + 1 Parent=HPS56_01035 JABKKF010000001 GenBank gene 7554 7892 . + 1 ID=HPS56_01040;Name=HPS56_01040 JABKKF010000001 GenBank mRNA 7554 7892 . + 1 ID=HPS56_01040;Parent=HPS56_01040 JABKKF010000001 GenBank CDS 7554 7892 . + 1 ID=HPS56_01040;Parent=HPS56_01040;Name=HPS56_01040;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004372993.1;product=DUF2149 domain-containing protein;protein_id=NPD90959.1;transl_table=11;translation=length.112 JABKKF010000001 GenBank exon 7554 7892 . + 1 Parent=HPS56_01040 JABKKF010000001 GenBank gene 8038 10605 . - 1 ID=HPS56_01045;Name=HPS56_01045 JABKKF010000001 GenBank mRNA 8038 10605 . - 1 ID=HPS56_01045;Parent=HPS56_01045 JABKKF010000001 GenBank CDS 8038 10605 . - 1 ID=HPS56_01045;Parent=HPS56_01045;Name=HPS56_01045;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007479263.1;product=glycoside hydrolase family 3 protein;protein_id=NPD90960.1;transl_table=11;translation=length.855 JABKKF010000001 GenBank exon 8038 10605 . - 1 Parent=HPS56_01045 JABKKF010000001 GenBank gene 11046 13397 . + 1 ID=HPS56_01050;Name=HPS56_01050 JABKKF010000001 GenBank mRNA 11046 13397 . + 1 ID=HPS56_01050;Parent=HPS56_01050 JABKKF010000001 GenBank CDS 11046 13397 . + 1 ID=HPS56_01050;Parent=HPS56_01050;Name=HPS56_01050;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014522.1%2CHMM:NF027701.1;product=hypothetical protein;protein_id=NPD90961.1;transl_table=11;translation=length.783 JABKKF010000001 GenBank exon 11046 13397 . + 1 Parent=HPS56_01050 JABKKF010000001 GenBank gene 13417 16692 . + 1 ID=HPS56_01055;Name=HPS56_01055 JABKKF010000001 GenBank mRNA 13417 16692 . + 1 ID=HPS56_01055;Parent=HPS56_01055 JABKKF010000001 GenBank CDS 13417 16692 . + 1 ID=HPS56_01055;Parent=HPS56_01055;Name=HPS56_01055;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008759838.1;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=NPD90962.1;transl_table=11;translation=length.1091 JABKKF010000001 GenBank exon 13417 16692 . + 1 Parent=HPS56_01055 JABKKF010000001 GenBank gene 16709 18274 . + 1 ID=HPS56_01060;Name=HPS56_01060 JABKKF010000001 GenBank mRNA 16709 18274 . + 1 ID=HPS56_01060;Parent=HPS56_01060 JABKKF010000001 GenBank CDS 16709 18274 . + 1 ID=HPS56_01060;Parent=HPS56_01060;Name=HPS56_01060;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF019592.1%2CHMM:NF025680.1;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=NPD90963.1;transl_table=11;translation=length.521 JABKKF010000001 GenBank exon 16709 18274 . + 1 Parent=HPS56_01060 JABKKF010000001 GenBank gene 18287 20050 . + 1 ID=HPS56_01065;Name=HPS56_01065 JABKKF010000001 GenBank mRNA 18287 20050 . + 1 ID=HPS56_01065;Parent=HPS56_01065 JABKKF010000001 GenBank CDS 18287 20050 . + 1 ID=HPS56_01065;Parent=HPS56_01065;Name=HPS56_01065;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014522.1%2CHMM:NF028443.1;product=DUF5108 domain-containing protein;protein_id=NPD90964.1;transl_table=11;translation=length.587 JABKKF010000001 GenBank exon 18287 20050 . + 1 Parent=HPS56_01065 JABKKF010000001 GenBank gene 20066 21880 . + 1 ID=HPS56_01070;Name=HPS56_01070 JABKKF010000001 GenBank mRNA 20066 21880 . + 1 ID=HPS56_01070;Parent=HPS56_01070 JABKKF010000001 GenBank CDS 20066 21880 . + 1 ID=HPS56_01070;Parent=HPS56_01070;Name=HPS56_01070;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=NPD90965.1;transl_table=11;translation=length.604 JABKKF010000001 GenBank exon 20066 21880 . + 1 Parent=HPS56_01070 JABKKF010000001 GenBank gene 21901 25020 . + 1 ID=HPS56_01075;Name=HPS56_01075 JABKKF010000001 GenBank mRNA 21901 25020 . + 1 ID=HPS56_01075;Parent=HPS56_01075 JABKKF010000001 GenBank CDS 21901 25020 . + 1 ID=HPS56_01075;Parent=HPS56_01075;Name=HPS56_01075;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:TIGR04056.1;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=NPD90966.1;transl_table=11;translation=length.1039 JABKKF010000001 GenBank exon 21901 25020 . + 1 Parent=HPS56_01075 JABKKF010000001 GenBank gene 25029 26933 . + 1 ID=HPS56_01080;Name=HPS56_01080 JABKKF010000001 GenBank mRNA 25029 26933 . + 1 ID=HPS56_01080;Parent=HPS56_01080 JABKKF010000001 GenBank CDS 25029 26933 . + 1 ID=HPS56_01080;Parent=HPS56_01080;Name=HPS56_01080;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=NPD90967.1;transl_table=11;translation=length.634 JABKKF010000001 GenBank exon 25029 26933 . + 1 Parent=HPS56_01080 JABKKF010000001 GenBank gene 27040 29307 . + 1 ID=HPS56_01085;Name=HPS56_01085 JABKKF010000001 GenBank mRNA 27040 29307 . + 1 ID=HPS56_01085;Parent=HPS56_01085 JABKKF010000001 GenBank CDS 27040 29307 . + 1 ID=HPS56_01085;Parent=HPS56_01085;Name=HPS56_01085;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF027642.1;product=DUF4957 domain-containing protein;protein_id=NPD90968.1;transl_table=11;translation=length.755 JABKKF010000001 GenBank exon 27040 29307 . + 1 Parent=HPS56_01085 JABKKF010000001 GenBank pseudogenic_exon 29651 31120 . + 1 ID=HPS56_01090;Name=HPS56_01090;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004301510.1;product=pectate lyase;pseudo=_no_value;transl_table=11 JABKKF010000001 GenBank pseudogene 29651 31120 . + 1 ID=HPS56_01090.pseudogene;Alias=HPS56_01090;Name=HPS56_01090;pseudo=_no_value