##gff-version 3 ##sequence-region JABKKE010000021 1 39952 # conversion-by bp_genbank2gff3.pl # organism Prevotella sp. PROD # Note Prevotella sp. PROD PROD_21, whole genome shotgun sequence. # date 25-MAY-2020 JABKKE010000021 GenBank region 1 39952 . + 1 ID=JABKKE010000021;Dbxref=BioProject:PRJNA630669,taxon:2736289;Name=JABKKE010000021;Note=Prevotella sp. PROD PROD_21%2C whole genome shotgun sequence.,The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2017\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 195.43x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##;collected_by=Iljazovic;collection_date=Jul-2017;comment1=The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2017\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 195.43x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##;country=Germany: Braunschweig;culture_collection=DSM:103721;date=25-MAY-2020;host=Mus musculus;isolation_source=feces;mol_type=genomic DNA;organism=Prevotella sp. PROD;strain=PROD;submitter_seqid=PROD_21 JABKKE010000021 GenBank gene 1 1419 . - 1 ID=HPS55_11495;Name=HPS55_11495 JABKKE010000021 GenBank mRNA 1 1419 . - 1 ID=HPS55_11495;Parent=HPS55_11495 JABKKE010000021 GenBank CDS 1 1419 . - 1 ID=HPS55_11495;Parent=HPS55_11495;Name=HPS55_11495;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005847302.1;product=alpha/beta hydrolase fold domain-containing protein;protein_id=NPE14934.1;transl_table=11;translation=length.472 JABKKE010000021 GenBank exon 1 1419 . - 1 Parent=HPS55_11495 JABKKE010000021 GenBank gene 1528 3105 . - 1 ID=HPS55_11500;Name=HPS55_11500 JABKKE010000021 GenBank mRNA 1528 3105 . - 1 ID=HPS55_11500;Parent=HPS55_11500 JABKKE010000021 GenBank CDS 1528 3105 . - 1 ID=HPS55_11500;Parent=HPS55_11500;Name=HPS55_11500;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005847094.1;product=hypothetical protein;protein_id=NPE14935.1;transl_table=11;translation=length.525 JABKKE010000021 GenBank exon 1528 3105 . - 1 Parent=HPS55_11500 JABKKE010000021 GenBank gene 3595 6867 . - 1 ID=HPS55_11505;Name=HPS55_11505 JABKKE010000021 GenBank mRNA 3595 6867 . - 1 ID=HPS55_11505;Parent=HPS55_11505 JABKKE010000021 GenBank CDS 3595 6867 . - 1 ID=HPS55_11505;Parent=HPS55_11505;Name=HPS55_11505;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015310452.1;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=NPE14936.1;transl_table=11;translation=length.1090 JABKKE010000021 GenBank exon 3595 6867 . - 1 Parent=HPS55_11505 JABKKE010000021 GenBank gene 6870 8612 . - 1 ID=HPS55_11510;Name=HPS55_11510 JABKKE010000021 GenBank mRNA 6870 8612 . - 1 ID=HPS55_11510;Parent=HPS55_11510 JABKKE010000021 GenBank CDS 6870 8612 . - 1 ID=HPS55_11510;Parent=HPS55_11510;Name=HPS55_11510;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014522.1;product=hypothetical protein;protein_id=NPE14937.1;transl_table=11;translation=length.580 JABKKE010000021 GenBank exon 6870 8612 . - 1 Parent=HPS55_11510 JABKKE010000021 GenBank gene 8643 10769 . - 1 ID=HPS55_11515;Name=HPS55_11515 JABKKE010000021 GenBank mRNA 8643 10769 . - 1 ID=HPS55_11515;Parent=HPS55_11515 JABKKE010000021 GenBank CDS 8643 10769 . - 1 ID=HPS55_11515;Parent=HPS55_11515;Name=HPS55_11515;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014522.1;product=hypothetical protein;protein_id=NPE14938.1;transl_table=11;translation=length.708 JABKKE010000021 GenBank exon 8643 10769 . - 1 Parent=HPS55_11515 JABKKE010000021 GenBank gene 10791 12533 . - 1 ID=HPS55_11520;Name=HPS55_11520 JABKKE010000021 GenBank mRNA 10791 12533 . - 1 ID=HPS55_11520;Parent=HPS55_11520 JABKKE010000021 GenBank CDS 10791 12533 . - 1 ID=HPS55_11520;Parent=HPS55_11520;Name=HPS55_11520;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF019592.1%2CHMM:NF025680.1;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=NPE14939.1;transl_table=11;translation=length.580 JABKKE010000021 GenBank exon 10791 12533 . - 1 Parent=HPS55_11520 JABKKE010000021 GenBank gene 12569 15961 . - 1 ID=HPS55_11525;Name=HPS55_11525 JABKKE010000021 GenBank mRNA 12569 15961 . - 1 ID=HPS55_11525;Parent=HPS55_11525 JABKKE010000021 GenBank CDS 12569 15961 . - 1 ID=HPS55_11525;Parent=HPS55_11525;Name=HPS55_11525;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005847103.1;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=NPE14940.1;transl_table=11;translation=length.1130 JABKKE010000021 GenBank exon 12569 15961 . - 1 Parent=HPS55_11525 JABKKE010000021 GenBank gene 15974 18892 . - 1 ID=HPS55_11530;Name=HPS55_11530 JABKKE010000021 GenBank mRNA 15974 18892 . - 1 ID=HPS55_11530;Parent=HPS55_11530 JABKKE010000021 GenBank CDS 15974 18892 . - 1 ID=HPS55_11530;Parent=HPS55_11530;Name=HPS55_11530;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014522.1;product=hypothetical protein;protein_id=NPE14941.1;transl_table=11;translation=length.972 JABKKE010000021 GenBank exon 15974 18892 . - 1 Parent=HPS55_11530 JABKKE010000021 GenBank gene 19179 19796 . - 1 ID=HPS55_11535;Name=HPS55_11535 JABKKE010000021 GenBank mRNA 19179 19796 . - 1 ID=HPS55_11535;Parent=HPS55_11535 JABKKE010000021 GenBank CDS 19179 19796 . - 1 ID=HPS55_11535;Parent=HPS55_11535;Name=HPS55_11535;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=NPE14942.1;transl_table=11;translation=length.205 JABKKE010000021 GenBank exon 19179 19796 . - 1 Parent=HPS55_11535 JABKKE010000021 GenBank gene 19883 22498 . - 1 ID=HPS55_11540;Name=HPS55_11540 JABKKE010000021 GenBank mRNA 19883 22498 . - 1 ID=HPS55_11540;Parent=HPS55_11540 JABKKE010000021 GenBank CDS 19883 22498 . - 1 ID=HPS55_11540;Parent=HPS55_11540;Name=HPS55_11540;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=NPE14943.1;transl_table=11;translation=length.871 JABKKE010000021 GenBank exon 19883 22498 . - 1 Parent=HPS55_11540 JABKKE010000021 GenBank gene 22721 27238 . - 1 ID=HPS55_11545;Name=HPS55_11545 JABKKE010000021 GenBank mRNA 22721 27238 . - 1 ID=HPS55_11545;Parent=HPS55_11545 JABKKE010000021 GenBank CDS 22721 27238 . - 1 ID=HPS55_11545;Parent=HPS55_11545;Name=HPS55_11545;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006281663.1;product=hypothetical protein;protein_id=NPE14944.1;transl_table=11;translation=length.1505 JABKKE010000021 GenBank exon 22721 27238 . - 1 Parent=HPS55_11545 JABKKE010000021 GenBank gene 27775 30366 . + 1 ID=HPS55_11550;Name=HPS55_11550 JABKKE010000021 GenBank mRNA 27775 30366 . + 1 ID=HPS55_11550;Parent=HPS55_11550 JABKKE010000021 GenBank CDS 27775 30366 . + 1 ID=HPS55_11550;Parent=HPS55_11550;Name=HPS55_11550;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007411427.1;product=glycoside hydrolase family 3 protein;protein_id=NPE14945.1;transl_table=11;translation=length.863 JABKKE010000021 GenBank exon 27775 30366 . + 1 Parent=HPS55_11550 JABKKE010000021 GenBank pseudogenic_exon 30369 31691 . + 1 ID=HPS55_11555;Name=HPS55_11555;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006799186.1;product=family 43 glycosylhydrolase;pseudo=_no_value;transl_table=11 JABKKE010000021 GenBank pseudogene 30369 31691 . + 1 ID=HPS55_11555.pseudogene;Alias=HPS55_11555;Name=HPS55_11555;pseudo=_no_value JABKKE010000021 GenBank gene 32394 33836 . + 1 ID=HPS55_11560;Name=HPS55_11560 JABKKE010000021 GenBank mRNA 32394 33836 . + 1 ID=HPS55_11560;Parent=HPS55_11560 JABKKE010000021 GenBank CDS 32394 33836 . + 1 ID=HPS55_11560;Parent=HPS55_11560;Name=HPS55_11560;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013064013.1;product=family 43 glycosylhydrolase;protein_id=NPE14946.1;transl_table=11;translation=length.480 JABKKE010000021 GenBank exon 32394 33836 . + 1 Parent=HPS55_11560 JABKKE010000021 GenBank gene 34118 36730 . + 1 ID=HPS55_11565;Name=HPS55_11565 JABKKE010000021 GenBank mRNA 34118 36730 . + 1 ID=HPS55_11565;Parent=HPS55_11565 JABKKE010000021 GenBank CDS 34118 36730 . + 1 ID=HPS55_11565;Parent=HPS55_11565;Name=HPS55_11565;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:TIGR04183.1,COORDINATES: similar to AA sequence:RefSeq:WP_015298608.1;product=T9SS type A sorting domain-containing protein;protein_id=NPE14947.1;transl_table=11;translation=length.870 JABKKE010000021 GenBank exon 34118 36730 . + 1 Parent=HPS55_11565 JABKKE010000021 GenBank gene 36974 39952 . + 1 ID=HPS55_11570;Name=HPS55_11570 JABKKE010000021 GenBank mRNA 36974 39952 . + 1 ID=HPS55_11570;Parent=HPS55_11570 JABKKE010000021 GenBank CDS 36974 39952 . + 1 ID=HPS55_11570;Parent=HPS55_11570;Name=HPS55_11570;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016268522.1;product=beta-galactosidase;protein_id=NPE14948.1;transl_table=11;translation=length.992 JABKKE010000021 GenBank exon 36974 39952 . + 1 Parent=HPS55_11570