##gff-version 3
##sequence-region CP019300 1 3964
# conversion-by bp_genbank2gff3.pl
# organism Prevotella intermedia ATCC 25611 = DSM 20706
# Note Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I, complete sequence.
# date 18-JAN-2017
CP019300	GenBank	chromosome	1	3964	.	+	1	ID=CP019300;Alias=I;Dbxref=BioProject:PRJNA313956,taxon:1122984;Name=CP019300;Note=Prevotella intermedia ATCC 25611 %3D DSM 20706 strain ATCC 25611 chromosome I%2C complete sequence.,Bacteria and source DNA available from Christopher D Johnston. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Method :: Celera Assembler v. June 2016,HGAP v. 2.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 200.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/17/2017 15:42:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set,GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 2,351 CDS (total) :: 2,283 Genes (coding) :: 2,191 CDS (coding) :: 2,191 Genes (RNA) :: 68 rRNAs :: 5,4,4 (5S,16S,23S) complete rRNAs :: 5,4,4 (5S,16S,23S) tRNAs :: 52 ncRNAs :: 3 Pseudo Genes (total) :: 92 Pseudo Genes (ambiguous residues) :: 0 of 92 Pseudo Genes (frameshifted) :: 51 of 92 Pseudo Genes (incomplete) :: 38 of 92 Pseudo Genes (internal stop) :: 20 of 92 Pseudo Genes (multiple problems) :: 12 of 92 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ;chromosome=I;collected_by=LV Holdeman;collection_date=1984;comment1=Bacteria and source DNA available from Christopher D Johnston. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Method :: Celera Assembler v. June 2016%3B HGAP v. 2.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 200.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/17/2017 15:42:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set%3B GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 2%2C351 CDS (total) :: 2%2C283 Genes (coding) :: 2%2C191 CDS (coding) :: 2%2C191 Genes (RNA) :: 68 rRNAs :: 5%2C 4%2C 4 (5S%2C 16S%2C 23S) complete rRNAs :: 5%2C 4%2C 4 (5S%2C 16S%2C 23S) tRNAs :: 52 ncRNAs :: 3 Pseudo Genes (total) :: 92 Pseudo Genes (ambiguous residues) :: 0 of 92 Pseudo Genes (frameshifted) :: 51 of 92 Pseudo Genes (incomplete) :: 38 of 92 Pseudo Genes (internal stop) :: 20 of 92 Pseudo Genes (multiple problems) :: 12 of 92 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ;country=USA;culture_collection=ATCC:25611;date=18-JAN-2017;host=Homo sapiens;isolation_source=Empyema;mol_type=genomic DNA;organism=Prevotella intermedia ATCC 25611 %3D DSM 20706;strain=ATCC 25611;type_material=type strain of Prevotella intermedia
CP019300	GenBank	gene	1	882	.	-	1	ID=BWX39_02890;Name=BWX39_02890
CP019300	GenBank	mRNA	1	882	.	-	1	ID=BWX39_02890.t01;Parent=BWX39_02890
CP019300	GenBank	CDS	1	882	.	-	1	ID=BWX39_02890.p01;Parent=BWX39_02890.t01;Name=BWX39_02890;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009435495.1;product=carbohydrate kinase;protein_id=APW31679.1;transl_table=11;translation=length.293
CP019300	GenBank	exon	1	882	.	-	1	Parent=BWX39_02890.t01
CP019300	GenBank	gene	894	2048	.	-	1	ID=BWX39_02895;Name=BWX39_02895
CP019300	GenBank	mRNA	894	2048	.	-	1	ID=BWX39_02895.t01;Parent=BWX39_02895
CP019300	GenBank	CDS	894	2048	.	-	1	ID=BWX39_02895.p01;Parent=BWX39_02895.t01;Name=BWX39_02895;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004367352.1;product=MFS transporter;protein_id=APW31680.1;transl_table=11;translation=length.384
CP019300	GenBank	exon	894	2048	.	-	1	Parent=BWX39_02895.t01
CP019300	GenBank	gene	2066	3964	.	-	1	ID=BWX39_02900;Name=BWX39_02900
CP019300	GenBank	mRNA	2066	3964	.	-	1	ID=BWX39_02900.t01;Parent=BWX39_02900
CP019300	GenBank	CDS	2066	3964	.	-	1	ID=BWX39_02900.p01;Parent=BWX39_02900.t01;Name=BWX39_02900;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004364471.1;product=2%2C6-beta-D-fructofuranosidase;protein_id=APW31681.1;transl_table=11;translation=length.632
CP019300	GenBank	exon	2066	3964	.	-	1	Parent=BWX39_02900.t01