LOCUS CP000303 6155 bp DNA linear BCT 31-JAN-2014 DEFINITION Bifidobacterium breve UCC2003, complete genome. ACCESSION CP000303 VERSION CP000303.1 DBLINK BioProject: PRJNA13487 BioSample: SAMN02604112 KEYWORDS . SOURCE Bifidobacterium breve UCC2003 ORGANISM Bifidobacterium breve UCC2003 Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 6155) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S.C., Reunanen,J., Bottacini,F., Claesson,M.J., O'Brien,F., Flynn,K., Casey,P.G., Moreno Munoz,J.A., Kearney,B., Houston,A.M., O'Mahony,C., Higgins,D.G., Shanahan,F., Palva,A., de Vos,W.M., Fitzgerald,G.F., Ventura,M., O'Toole,P.W. and van Sinderen,D. TITLE Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor JOURNAL Proc. Natl. Acad. Sci. U.S.A. (2011) In press PUBMED 21690406 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 6155) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S., Reunanen,J., Bottacini,F., Claesson,M., O'Brien,F., O'Flynn,K., Casey,P., Moreno-Munoz,J., Higgins,D.G., Shanahan,F., de Vos,W., Fitzgerald,G.F., Ventura,M., O'Toole,P. and van Sinderen,D. TITLE Direct Submission JOURNAL Submitted (27-MAR-2006) Department of Microbiology, Alimentary Pharmabiotic Centre, University College Cork, College Road, Cork, Munster, Ireland COMMENT Source DNA or strain is available from Douwe van Sinderen, d.vansinderen@ucc.ie. FEATURES Location/Qualifiers source 1..6155 /organism="Bifidobacterium breve UCC2003" /mol_type="genomic DNA" /strain="UCC2003" /db_xref="taxon:326426" gene 1..1005 /gene="cldR" /locus_tag="Bbr_0105" CDS 1..1005 /gene="cldR" /locus_tag="Bbr_0105" /codon_start=1 /transl_table=11 /product="STP|LacI,STP|Peripla_BP_3" /protein_id="ABE94817.1" /translation="MANGQKATIRDVAKRAGVAVSTASRALSHGSASKATREKVFRAAG ELNFVPNPAARQLMSGRSNIVAIAIPEHTDFIFRDMFVAGILGELSRAFSERRMLPFLA LTELQDTESLERLLRDSSADGVVVLSFHYSRQLAQVFHDFDKPTVFIGRPFPRMRYPYV DVDNEGAAYCAAELLVERGRRNIGIIAGPDDMMAPKQRTMGCVNGLADQGMKPLAVISG EYTAEHGFEACERILEQYPEVDGVFAQSDQIAVGVLQALAKHGRQVPNDVSVIGFDDFP VATMTNPKLTTFAQPLHDMAQVIAEMLCWRLEHGEWNTVAQVLPASLIKRDSV" gene 1186..2493 /gene="cldE" /locus_tag="Bbr_0106" CDS 1186..2493 /gene="cldE" /locus_tag="Bbr_0106" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X9R7|3.A.1.1.23" /protein_id="ABE94818.1" /translation="MKRSKAMFSAVLAVATVVSLAACGTANNSGNATTKDGKTIIKIQT FNNFGYGKPTNERPSADLWSKYEKLHPNIKIEETIASGSDEARSAFNTAISSGSDAYDI YAADIAWMPSVLAISDSFMDLSSYLKKNDWLDWKVEGGKANGKIIGAGNDIGPTAVCYR SDLFQKAGLPTDRTEVAKMLGGDSATWDQYFKVGREYTQKTGLPWYDAMGGLWGTMKSQ MKESYVKKDGTIVATTDKMKKNFETLTATTDMSAHLTQWSDDWNAQFKSDKGFATIMCP AWLVNNIKGNAGSDFKGWDIADVTPGGGSNQGGSWLVVPESSKVKEEAAKLVAWLTAPE QQVATFKAASNYPSSPTAMANDTVSNKVDTFLNNAPTGKIFADRAKAVKVVPYMGAQYF DIDSKFGNALDRVDVNKEQTPSQAWKQYVDDVKSLS" gene 2572..3693 /gene="cldF" /locus_tag="Bbr_0107" CDS 2572..3693 /gene="cldF" /locus_tag="Bbr_0107" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X9R6|3.A.1.1.23" /protein_id="ABE94819.1" /translation="MTARQSHGQAKSKQDWHSRLEMFEWKASPYLYIAPFFILFLIVGL FPLLYTMWIATRQFNTLTGDAGFAVCGSTCGTTNASWFGNFMWVLHQPTFYVALRNSVS IFLLSSVPQIIIALWLAWVLDANLKAKTFWRMGVLLPYIVAPSAAGIIFSQVFSDKMGA INVLLQQIGMQPIMWHGNTFWSHVAIATIVNWRYIGYNTLILLAAMQAIPRDVLEAAVV DGAGKWRTFRSVTLPMLRPTLIFVIITSTIGGLQIFDEPQMFHNGASAGGGANNQYLTV SLYLYKLGFVSVTPGQPNLGRAAAVAWILFLIVVAISLLNYALTQRLATGGQSRESKEA ARLSAQRDEAERQKAIRTGVNGRMDAQQVAERK" gene 3701..4648 /gene="cldG" /locus_tag="Bbr_0108" CDS 3701..4648 /gene="cldG" /locus_tag="Bbr_0108" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X9R5|3.A.1.1.23" /protein_id="ABE94820.1" /translation="MVDLTNESDKREVGVPALEQVYGKSVARAAKRQRNARLGMTSEGR KPGWGSYAILIVTLLIFVFPLYYALSIASQNTPSNQYGVRALIPGTALLHNLSRALGEL KFWQALGGTVTVAVVVSVSTVFFSTLAGYSFAKLHFRGRSVLLTAVVATMTIPQQLTVV PLYIMANKAGLYGNLLAVIIPGLVSAFGVFWMTQYITDALPYELIEAARVDGCSMFRTF ISVGVPAARPAASMLFLFTFIGQWTNYFWPMLVLGANKSYMLTTAAAALKGAYFTDYTI VMSGVILTTAPLLLLFFVAGKQLVAGIMAGAVKG" gene 4755..6155 /gene="cldC" /locus_tag="Bbr_0109" CDS 4755..6155 /gene="cldC" /locus_tag="Bbr_0109" /EC_number="3.2.1.21" /codon_start=1 /transl_table=11 /product="GH1" /protein_id="ABE94821.1" /translation="MTFVFPKNFTWGVATASYQVEGAIHEDGRAPSIWDAFCAVPGAIE DHSSGEVACDEYHRYPEDITLLKELGVNAYRLSIAWPRIVPLADGKVNSKGVEHYIKVL DALRDAGIRPVVTLYHWDLPQYLEDQGGWANRDTALRYGDYVHALAEAFGDRVDTWTTL NEPWCAAYLGYGNGIHAPGVRDYGKALSAVHHLNLAHGLGALAVHDTLDERAKVSVTLN LSACVAQSDSEADRMAKHRNDLLSNEVFLGPMLDGAYDPEIFDVTTDYTDWSFIRDDDL KTIRQPVQCLGINYYSSTHVKGVTDPAECERRRNDHMQAVPAQDIVDALPPEGELTDMG WNQEPRVLTEMLVGLAKRYPGLDLMVTENGSAWKDEVTEDSSAPGGRIIHDPKRVAYLN HHIRAIADAIEAGVPVVGYFAWSLLDNFEWAFGYSKRFGIIGVDYETQKRIWKDSAYRY RQIIQEGI" ORIGIN 1 gtggcaaacg ggcagaaggc aactattcgt gacgtggcta agagggccgg cgtggctgtt 61 tcgacggctt cgcgtgcgtt gagtcatggc tcggcttcaa aagcgacccg tgagaaggtc 121 tttcgtgccg caggggagtt gaattttgta ccgaatccag cagcacgtca gttgatgagt 181 gggcgaagca atattgtcgc catagccatt cctgaacata cggatttcat cttcagggat 241 atgttcgtcg cggggattct tggtgagctt tcgagggcat tcagcgagcg tcgtatgtta 301 ccgttccttg cgttgaccga actgcaggac acggaatccc tggaacgtct gctacgtgat 361 tccagcgcag acggagtggt ggtgctgagc ttccactatt cacgacaatt ggcacaggtc 421 tttcatgatt tcgataagcc cacggtattc ataggccgcc cgtttcctcg tatgagatat 481 ccgtatgtgg acgtcgataa tgagggggcg gcgtactgtg ctgcggaatt gttggttgag 541 agaggccgca gaaatatagg catcattgcc gggccggacg atatgatggc accgaagcag 601 cgcactatgg ggtgtgtgaa cggtcttgct gaccagggga tgaagccgtt ggcagtgatc 661 tcgggagaat atactgcgga gcacggtttt gaggcatgcg aaaggattct cgagcagtat 721 cccgaagtgg atggtgtttt tgcgcagtcc gatcagatcg cagtgggtgt gttgcaggcg 781 ctggccaagc atggaaggca agtgcccaat gatgtatcgg tgattgggtt cgatgatttc 841 ccggttgcga cgatgacgaa tccgaaactg accacttttg cccagccgtt gcacgatatg 901 gctcaggtga ttgccgaaat gctgtgttgg cggttggagc acggggaatg gaacactgtg 961 gcacaagtat tgcctgcgtc actaatcaaa cgtgatagcg tctgatggta ttgcccgaat 1021 cagcggttgt attttttgaa atccatgcct gaatgctaat ccggcatgga tttgttgttt 1081 ttcgtagggt gtgctatctt agaactgttt ttggaaacgg ttccaaaaat aaagggaagt 1141 gatgaggctt tccgaatcga gcgcagtgat gcggaaggag ataaaatgaa gaggtcaaag 1201 gcgatgtttt cagctgtgtt agctgttgct accgtggtga gcctcgcagc ttgcggtact 1261 gctaataata gtggaaacgc taccactaaa gatggaaaaa cgattatcaa gattcaaacc 1321 tttaataatt ttggctatgg taagcccacc aatgagcgcc caagtgctga cttgtggagc 1381 aagtacgaaa agctgcatcc gaacatcaaa atcgaagaga ctatcgcctc gggttccgat 1441 gaggcgcgtt cggctttcaa cacggccatc tcttccggtt ctgacgccta cgacatctat 1501 gctgccgaca ttgcctggat gccatcagtg cttgcgatct ctgattcctt catggatctg 1561 agcagctacc tcaaaaagaa cgattggctt gactggaagg tcgaaggtgg caaggccaat 1621 ggcaagataa ttggcgcagg taacgatatc ggtccgactg ccgtgtgcta ccgttccgat 1681 ttgttccaga aggctggtct acccaccgat cgtaccgaag tcgccaagat gctcggtgga 1741 gattctgcga cctgggatca gtacttcaag gtaggccgtg aatataccca gaagactggc 1801 ttgccgtggt atgacgccat gggcgggcta tggggcacca tgaaatccca aatgaaggaa 1861 tcctacgtca agaaggacgg caccatcgtt gccaccactg acaaaatgaa gaagaacttc 1921 gaaacgctga ctgccaccac cgatatgtcc gcccatctga ctcagtggag cgatgattgg 1981 aacgcgcaat tcaagtctga taagggcttt gccaccatca tgtgtcccgc atggctggtc 2041 aacaacatca aaggcaatgc aggctccgat ttcaagggat gggacatcgc tgatgtcact 2101 cctggtggcg gttccaacca aggtggttcc tggcttgtag tgccggagag ctccaaggta 2161 aaggaggagg ccgccaaact ggtggcatgg cttaccgccc ctgagcagca ggtagctacc 2221 ttcaaggccg cttcgaacta tccaagctcg ccgactgcaa tggccaatga taccgtttca 2281 aacaaagtgg ataccttcct caacaatgct ccgaccggca agatcttcgc agaccgagcg 2341 aaggctgtga aggttgttcc atatatgggt gcccagtatt tcgatatcga ttcgaagttc 2401 ggcaacgcat tggatcgtgt ggatgtcaat aaggagcaga caccgtccca ggcgtggaag 2461 caatacgtcg acgacgtgaa gtccctgtcc tgatcgactg gcgcatcggg gaggatgcgt 2521 cgctgggtgt acatcctccc cgatgagaga tttatttgga aggaaaacaa tatgacggca 2581 cggcaaagtc acggccaagc caagtcgaaa caagactggc atagccggtt ggagatgttc 2641 gaatggaaag cgtctccata cctttacatc gctccattct tcatcctctt cctcatagtt 2701 gggctgtttc cgctgcttta caccatgtgg atcgcgacta ggcagttcaa cacgctcacc 2761 ggcgatgctg gattcgcggt gtgcggttcc acttgcggca ccacgaatgc ttcttggttc 2821 ggcaacttca tgtgggtgct gcatcagccg accttctacg tggcattgcg caactcagtc 2881 tctatcttcc tgctgagctc cgtaccgcag atcatcatcg cgctatggct cgcatgggtt 2941 cttgacgcaa atctcaaagc taagacgttc tggcgtatgg gcgtgttgct gccgtacatc 3001 gtcgcgcctt ccgctgcggg cattatcttt tcgcaggttt tctccgacaa aatgggtgcc 3061 atcaatgtac tgctacagca aatcggcatg cagccgatca tgtggcacgg caacacattc 3121 tggtcgcatg tcgccatcgc gaccattgtt aactggcgct atatcggtta caacacgctg 3181 attttgcttg ccgctatgca ggccattccc cgcgatgtgc ttgaagcggc cgtcgtggat 3241 ggtgcgggca aatggcgtac gttccgttct gtcactctgc cgatgcttcg gccgacgcta 3301 atcttcgtca tcatcacctc gaccattggt ggtttgcaga tctttgatga acctcagatg 3361 ttccataacg gtgcttccgc cggtggcggt gcgaacaacc aatacctaac cgttagcctg 3421 tacctgtaca agctcggctt cgtcagtgtg acccccggac agccgaacct gggcagagcg 3481 gccgctgtgg catggatcct cttcctgatt gttgtcgcta tctccttgct gaattatgcg 3541 ctgacccagc gtcttgccac aggcgggcaa tccagagagt ccaaggaagc cgcgcgactt 3601 tctgcgcaac gggatgaagc cgaacgtcag aaggccatcc gcactggcgt gaatggccgc 3661 atggacgcac agcaggtggc agagagaaag tgaggaaatc atggttgatt tgaccaatga 3721 atccgataag agggaagtgg gcgttccggc cctggaacag gtctatggaa agagtgtcgc 3781 gcgtgcggcc aaacggcagc gcaatgcgcg tctcggcatg acatccgaag gacgtaagcc 3841 tggttgggga agctatgcaa ttcttattgt cacactgctg atatttgtat tcccgttgta 3901 ttacgcgttg tccatcgcat cgcagaatac gccaagcaac cagtatggtg tgagagctct 3961 gattccgggc actgcactgc tgcataatct cagtcgcgcg ctcggcgaac tgaaattctg 4021 gcaggcttta ggcggaaccg tcaccgtggc cgtggtcgta tccgtatcca ccgtgttctt 4081 cagcacgctt gccggctact catttgccaa attgcatttc cgcggtcgca gcgttctgct 4141 tactgcagtg gtcgccacta tgaccattcc gcagcagctc actgttgtgc cactgtatat 4201 catggccaac aaggccggat tgtacggcaa tctgctcgcc gtgatcatcc cgggtctggt 4261 cagtgcattc ggcgtgttct ggatgaccca gtacatcacc gacgccttgc cttacgaatt 4321 gattgaggcg gcgcgagtgg atggctgcag catgttccgc accttcatct ccgtcggcgt 4381 tcccgccgcg cgtcctgcgg cctccatgct gtttctgttt acgttcatcg gccaatggac 4441 gaactatttc tggcccatgc tggtgctcgg cgcaaacaag agctacatgc tcaccaccgc 4501 tgcggctgca ttgaagggcg cgtacttcac cgattacacc atcgtgatgt ccggtgtcat 4561 tcttactacg gcgccgttgc tgttgctatt cttcgtggca ggcaagcaat tggtcgccgg 4621 catcatggcc ggtgcggtga agggctgatt ctcagttccg atgttctgaa atttcacgct 4681 ctgctcggta cacaatgaac cggtcatgcc gggcggagcg ttttcacttt ccataattca 4741 tgaggagctt gattatgaca ttcgtttttc cgaaaaattt cacatggggg gtggcgacag 4801 cctcgtacca ggtcgaaggt gccattcacg aagacgggcg cgcgccatcc atctgggatg 4861 ctttctgtgc ggttcccggt gctatcgaag atcattcctc cggcgaggtg gcctgcgacg 4921 aataccaccg atacccagaa gacataacgt tgcttaaaga acttggcgtc aacgcctata 4981 ggctttccat tgcatggcca cgaatcgttc ccttggctga cggcaaggtc aattccaagg 5041 gcgtggagca ttacatcaag gtattagatg ccctacgcga tgcgggtatt cggcctgtcg 5101 tcacgttata tcactgggat ttgccgcaat acttggaaga ccagggaggc tgggcgaatc 5161 gcgatacggc attgcggtac ggcgattacg tacatgcttt ggccgaggct ttcggcgatc 5221 gcgtcgatac atggactacg ttgaatgagc catggtgcgc ggcatatctc ggatatggca 5281 atggcatcca tgcgccgggt gtgcgtgatt acggcaaggc gctgtcggcg gtgcatcact 5341 tgaatcttgc ccatggctta ggcgctttgg ctgttcacga cacactcgac gagcgggcca 5401 aggtatccgt cactttgaac ttgagcgctt gcgtcgcgca aagcgacagt gaggcggatc 5461 gtatggccaa gcatcgtaat gatctgcttt ccaatgaggt gtttctcggt ccgatgctcg 5521 atggcgccta tgatcctgaa atcttcgacg ttaccaccga ctacaccgat tggtcgttca 5581 tccgagacga tgatctgaag acgattcgcc agcctgttca atgcttgggc attaactact 5641 attcctccac tcacgtgaaa ggtgtgaccg atcctgcgga gtgcgagcgg cgtagaaacg 5701 atcacatgca ggctgtgccg gcgcaggata tcgttgatgc attgccgcct gaaggcgaac 5761 tgacggatat ggggtggaat caggaaccgc gggtcctgac cgaaatgctg gtcggtcttg 5821 ctaagcgcta tccggggctg gacctgatgg ttacggagaa tggttctgcg tggaaggacg 5881 aggtgactga ggattcctct gctccgggtg gaaggatcat ccatgatccg aagcgcgtag 5941 cctatcttaa tcatcatatt cgtgcaatcg ccgatgccat cgaggccgga gttccggtgg 6001 tcggttattt tgcatggtca ttgttggata atttcgaatg ggccttcgga tattcgaagc 6061 gattcggcat tatcggtgtt gactatgaga cgcagaagcg tatctggaaa gattcggcat 6121 accggtatcg tcagatcatc caggaaggaa tctga //