LOCUS NC_010572 6166 bp DNA linear CON 10-FEB-2020 DEFINITION Streptomyces griseus subsp. griseus NBRC 13350, complete sequence. ACCESSION NC_010572 VERSION NC_010572.1 DBLINK BioProject: PRJNA224116 BioSample: SAMD00060929 Assembly: GCF_000010605.1 KEYWORDS RefSeq. SOURCE Streptomyces griseus subsp. griseus NBRC 13350 ORGANISM Streptomyces griseus subsp. griseus NBRC 13350 Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces. REFERENCE 1 AUTHORS Ohnishi,Y., Ishikawa,J., Hara,H., Suzuki,H., Ikenoya,M., Ikeda,H., Yamashita,A., Hattori,M. and Horinouchi,S. TITLE Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350 JOURNAL J. Bacteriol. 190 (11), 4050-4060 (2008) PUBMED 18375553 REFERENCE 2 AUTHORS Funabashi,M., Funa,N. and Horinouchi,S. TITLE Phenolic lipids synthesized by type III polyketide synthase confer penicillin resistance on Streptomyces griseus JOURNAL J. Biol. Chem. 283 (20), 13983-13991 (2008) PUBMED 18364359 REMARK Erratum:[J Biol Chem. 2008 Sep 5;283(36):25104] REFERENCE 3 AUTHORS Hirano,S., Tanaka,K., Ohnishi,Y. and Horinouchi,S. TITLE Conditionally positive effect of the TetR-family transcriptional regulator AtrA on streptomycin production by Streptomyces griseus JOURNAL Microbiology (Reading, Engl.) 154 (Pt 3), 905-914 (2008) PUBMED 18310036 REFERENCE 4 (bases 1 to 6166) AUTHORS Hattori,M., Ohnishi,Y., Yamashita,A., Ishikawa,J., Ikeda,H. and Horinouchi,S. TITLE Direct Submission JOURNAL Submitted (23-AUG-2007) Contact:Masahira Hattori Graduate School of Frontier Sciences, The University of Tokyo; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/ COMMENT ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/10/2020 02:00:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Method :: Best-placed reference protein Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; Genes (total) :: 7,167 CDSs (total) :: 7,079 Genes (coding) :: 6,935 CDSs (with protein) :: 6,935 Genes (RNA) :: 88 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 3 Pseudo Genes (total) :: 144 CDSs (without protein) :: 144 Pseudo Genes (ambiguous residues) :: 0 of 144 Pseudo Genes (frameshifted) :: 74 of 144 Pseudo Genes (incomplete) :: 97 of 144 Pseudo Genes (internal stop) :: 11 of 144 Pseudo Genes (multiple problems) :: 35 of 144 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## REFSEQ INFORMATION: The reference sequence was derived from AP009493. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ The complete and fully annotated sequences are also available at http://park.itc.u-tokyo.ac.jp/hakko/genome/ Annotation Pipeline (PGAP) set; GeneMarkS-2+ repeat_region FEATURES Location/Qualifiers source 1..6166 /organism="Streptomyces griseus subsp. griseus NBRC 13350" /mol_type="genomic DNA" /strain="NBRC 13350" /sub_species="griseus" /db_xref="taxon:455632" /note="synonym: Streptomyces griseus subsp. griseus IFO 13350" gene 1..1323 /locus_tag="SGR_RS23570" /old_locus_tag="SGR_4735" /db_xref="GeneID:6209155" CDS 1..1323 /locus_tag="SGR_RS23570" /old_locus_tag="SGR_4735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014672903.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X9R7|3.A.1.1.23" /protein_id="WP_012380827.1" /db_xref="GeneID:6209155" /translation="MRITRSVAGRRRRTALVATTGLTVTALLLTGCGGSSDSDKGADAD GNITLTLADFGQFGYKEAGLFEKYHELNPKITVKEDTTAEEKNYYPKLLQQLNSGSGLA DVQGIEVGRIKEIVDTKADSFADLSQTIGVDEWVSWKAKQATAPSGAVIGAGTDIGPMS LCYNRELFEKAGLPTDRAEVAKLTEGGWEDFLALGEQYKKKAPEGTYFMDSASAMFNAV VSSSPEQYYDASGKPVYETSASVEKGWKLAAEAASKKLTQGLAQFEDQWQAALRKSTVA TVVCPAWMAGQISTYAGDANKGKWDITSAPGNTSANWGGSFLAVPKSGKNVAEATKLVR WLTAPEQQAAVFKAIGVFPSNQGAYELPDVKNATLPYFNNAPIGQIYADGAKSIPEAVL GPKDGVIKDSISTQINNMEQRGTSPDDAWDAAVRTIDKAIG" gene 1492..2490 /locus_tag="SGR_RS23575" /old_locus_tag="SGR_4736" /db_xref="GeneID:6214400" CDS 1492..2490 /locus_tag="SGR_RS23575" /old_locus_tag="SGR_4736" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018518043.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X9R6|3.A.1.1.23" /protein_id="WP_012380828.1" /db_xref="GeneID:6214400" /translation="MATSTPTRDAYATPPREPKKEPPSERRQLWRSRLWRFDDKASPYA YIAPFFLVFGAFGLYPLLYTGWIALHRVEMTGLDSMEWVGWENFDKILHDPEFWTSVSN TFLIGVISTVPQLLVALGLAHLLNYKLRASTFWRTVILTPYATSVASAALVFALVFRAD GGLLNWTLGLVGFDPVNWANGHWTSKLAISIIVIWRWTGYNALIYLAAMQAVPNDLYEA ASLDGASRWQQFRKVTIPSLRPTILFTIVISTIGSMQLFGEPLLLEGGALGATGGNENQ YETLSIYLYNYGWNLGHLGPAAAVAWAMLALLLIIAAANWFIGRFVRKSAV" gene 2505..3425 /locus_tag="SGR_RS23580" /old_locus_tag="SGR_4737" /db_xref="GeneID:6214401" CDS 2505..3425 /locus_tag="SGR_RS23580" /old_locus_tag="SGR_4737" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014672901.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X9R5|3.A.1.1.23" /protein_id="WP_012380829.1" /db_xref="GeneID:6214401" /translation="MTLTSPTHPAPVKLAPAPQGGAPRRPSRFRMGAGQQLKGGPFAYI ALAVVGFGSLLPLYWTLVAASRTQDEVLAATPPFLPGGKLLENLQTAWEQANLGTAILN SVIVSSSITLATLFFCTLAGYAFAKMRFRGRGWLMTAVIATLTIPPQLSVVPLFMMMSG LGWGGQLESVIFPTLVSAFGVFFMRQYLIEALPYELIEAAKIDGANNLRIVVSVVLPVA RPAMMVLGMLTFVQAWNDFFWPYLALNQQNPTLQVALGQLSASYTPDQSIVMAGALIST LPLLVVFVVFGKKIVGGIMSGAVKG" gene 3492..4949 /locus_tag="SGR_RS23585" /old_locus_tag="SGR_4738" /db_xref="GeneID:6211999" CDS 3492..4949 /locus_tag="SGR_RS23585" /old_locus_tag="SGR_4738" /EC_number="3.2.1.23" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012380830.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GH1" /protein_id="WP_012380830.1" /db_xref="GeneID:6211999" /translation="MTVVRPDTVPQQAPAATAPFPTGFLWGAATAAYQVEGAAAEMGRT PSIWDTFSHTPGRTLGGDTGDVAADHFHRYRDDVALMKRLGLQAYRFSVSWSRVQPTGR GPAVERGLDFYRSLVDELLLAGIKPVATLYHWDLPQELEDAGGWPERATAERFAEYAAI MARALGDRVGMWTTLNEPWCSAFLGYGSGVHAPGRTEPAAALRAAHHLNLAHGRATEAL RANLPAAAQTSVTLNLHQVRPLTGSEADADAARRIDAVGNRVFTGPMLKGAYPEDLLAD TERIVNWGELVRDGDLAAIAAPIDVLGVNYYTPTIVSTPASGAGDTRNDGHGSSDHSPW PGSEHVAFHLAEGRPVTAMNWSVKPEGLYDLLMDVSREHPELPLMVTENGAAFDDAPDA DGRVHDPERIAYLRGHLEAVRRAAADGADVRGYFLWSLMDNFEWGYGYAKRFGAVYVDY ETQLRTPKSSAHWYGEVIARHALPPEA" gene 5129..6166 /locus_tag="SGR_RS23590" /old_locus_tag="SGR_4739" /db_xref="GeneID:6212000" CDS 5129..6166 /locus_tag="SGR_RS23590" /old_locus_tag="SGR_4739" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015577271.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="STP|LacI,STP|Peripla_BP_3" /protein_id="WP_003968984.1" /db_xref="GeneID:6212000" /translation="MAASRVRNGGRPTLEEVAARAGVGRGTASRVINGSPRVSDATRQA VEAAVAELGYVPNRAARALAGNRTDAIALVVPEPETRFFAEPYFSAIVRGVGAALADTE MQLLLTLVGNDRERRRLAQYLTAHRVDGVLLVAVHADDPLPELLEQLGMPCVISGARHA AETLPSVDSDNFEGARAAVEHLVSRGRRQVATITGRLEVYGAQRRLDGYRAAVSAAGLA PDERLIAPADFTEEGGARAMRDLLARRPGLDAVFVASDVMAAGARQVLREADRRIPEDV ALIGFDDSVVARHMHPALTSVRQPIEEMGRRMAQLLLDEIAGRAPGDERPSVVLPTELV VRDSS" ORIGIN 1 atgcgcatca cccgcagcgt tgccggtcga cgcaggagaa ccgccctcgt ggccaccacg 61 ggcctcacgg tcaccgccct cctcctcacc ggatgcggcg gctcgtccga ctcggacaag 121 ggcgccgacg cggacggcaa catcaccctg accctcgccg acttcgggca gttcgggtac 181 aaggaggccg ggctcttcga gaagtaccac gagctgaacc cgaagatcac ggtcaaggag 241 gacaccaccg ccgaggagaa gaactactac cccaagctcc tccagcagct gaactccggc 301 agcggcctcg ccgacgtcca gggcatcgag gtcggccgga tcaaggagat cgtcgacacc 361 aaggcggact ccttcgccga cctctcccag acgatcggcg tggacgagtg ggtgtcgtgg 421 aaggcgaagc aggccaccgc ccccagcggc gcggtcatcg gcgcgggcac cgacatcggc 481 cccatgtccc tctgctacaa ccgtgagctg ttcgagaagg ccgggctgcc caccgaccgc 541 gccgaggtcg cgaagctgac ggagggcggc tgggaggact tcctggcgct gggcgagcag 601 tacaagaaga aggcccccga gggcacgtac ttcatggact ccgcgagcgc catgttcaac 661 gccgtggtca gctccagccc cgagcagtac tacgacgcga gcggcaagcc ggtctacgag 721 acgagcgcca gcgtcgagaa gggctggaag ctcgccgccg aggccgcgtc caagaagctg 781 acgcagggcc tggcccagtt cgaggaccag tggcaggcgg ccctgcgcaa gagcaccgtc 841 gccaccgtcg tctgccccgc ctggatggcc ggccagatct ccacctacgc cggtgacgcc 901 aacaagggca agtgggacat caccagcgcc cccggcaaca cctccgccaa ctggggcggc 961 tccttcctcg ccgtcccgaa gtccgggaag aacgtcgccg aggccaccaa gctcgtcagg 1021 tggctgaccg cccccgagca gcaggccgcc gtcttcaagg cgatcggcgt cttcccgtcc 1081 aaccagggcg cctacgagct gccggacgtg aagaacgcga ccctgccgta cttcaacaac 1141 gcccccatcg gccagatcta cgccgatggc gcgaagtcca tccccgaggc ggtcctcggc 1201 ccgaaggacg gcgtgatcaa ggactccatc tccacccaga tcaacaacat ggagcagcgc 1261 ggcaccagcc ccgacgacgc ctgggacgcg gccgtgcgga cgatcgacaa ggccatcggc 1321 tgacctgatc cccgaccggc cgcgagccgg tcccgcgccg gggtgggcgg gcgacaaccg 1381 cccgccccgc cgcccgccca cccctccggc cgcccgcagc tccactcctc cagccgcccc 1441 tccggccgcc ccggccgtcc gtcggcgcac ccagggaagg actccccgcc cgtggcaacc 1501 tcgaccccca cccgggatgc gtacgcgacc ccgccccgtg aaccgaagaa ggaaccgccc 1561 agcgaacggc ggcagttgtg gcgcagccgg ctgtggcggt tcgacgacaa ggcgtccccg 1621 tacgcgtaca tcgccccgtt cttcctggtc ttcggggcct tcgggctcta ccccctcctc 1681 tacaccggct ggatcgccct gcaccgggtg gagatgaccg gcctggactc gatggagtgg 1741 gtgggctggg agaacttcga caagatcctg cacgaccccg agttctggac ctcggtcagc 1801 aacacgttcc tgatcggcgt catctccacc gtgccgcagc tcctggtcgc cctcggcctg 1861 gcccacctcc tcaactacaa gctgcgggcc agcacgttct ggcgcacggt catcctcacc 1921 ccgtacgcga cctcggtcgc ctcggccgcc ctcgtcttcg ccctggtgtt ccgggccgac 1981 ggcgggctgc tgaactggac gctcggcctg gtcggcttcg acccggtcaa ctgggccaac 2041 gggcactgga cgtcgaagct ggcgatctcg atcatcgtca tctggcgctg gaccgggtac 2101 aacgcgctga tctacctcgc cgccatgcag gccgtcccca acgacctcta cgaagcggcc 2161 tccctggacg gggcctcccg ctggcagcag ttccgcaagg tcaccatccc ctcgctgcgg 2221 ccgacgatcc tgttcaccat cgtcatctcc accatcggct ccatgcagct gttcggcgag 2281 ccgctgctgc tggagggcgg cgcgctgggc gccaccggcg gcaacgagaa ccagtacgag 2341 acgctcagca tctacctcta caactacggc tggaacctcg gacatctcgg tccggccgcc 2401 gccgtcgcct gggcgatgct cgccctcctg ctgatcatcg ccgcggccaa ctggttcatc 2461 ggccgattcg tccgcaagtc cgcggtctga ccgggagcgc atccatgacc ctgaccagcc 2521 ccacgcaccc cgcccccgtg aagctcgcgc cggccccgca gggcggcgcc ccgcggcggc 2581 ccagccgctt ccggatgggc gccggccagc agctgaaggg cggcccgttc gcgtacattg 2641 cgctcgccgt cgtcggcttc ggctcgctgc tgccgctcta ctggaccctg gtcgcggcct 2701 cccgcaccca ggacgaggtc ctcgccgcca ccccgccgtt cctccccggc gggaaactgc 2761 tggagaacct ccagaccgcc tgggagcagg ccaacctcgg cacggcgatc ctcaacagcg 2821 tcatcgtctc gtcctcgatc accctcgcga cgctcttctt ctgcacgctc gccggctacg 2881 cgttcgccaa gatgcgcttc cggggccgcg gctggctgat gaccgcggtc atcgccaccc 2941 tcaccatccc accgcagctc agcgtcgtcc cgctgttcat gatgatgtcc ggcctcggct 3001 ggggcgggca gctcgaatcc gtgatcttcc cgacgctggt gagcgcgttc ggcgtcttct 3061 tcatgcgcca gtacctgatc gaggcgctgc cgtacgagct gatcgaggcg gccaagatcg 3121 acggcgcgaa caacctccgc atcgtggtga gcgtggtgct gccggtggcc cgccccgcga 3181 tgatggtgct cgggatgctc accttcgtcc aggcgtggaa cgacttcttc tggccctacc 3241 tcgccctcaa ccagcagaac ccgacccttc aggtggccct cggccagctc agcgcctcgt 3301 acacccccga ccagtccatc gtgatggcgg gcgcgctgat cagcacgctg ccgctgctgg 3361 tggtgttcgt ggtcttcggc aagaagatcg tcggcgggat catgtccggc gcggtgaagg 3421 gctgaccctc cctcgcccgg cgtcctctcc acctccttcc cacccctcac ttccccaggg 3481 agcgctccca catgacagtc gtccgacctg acacggtccc gcagcaggcc cccgccgcca 3541 cggccccctt cccgaccggt ttcctctggg gcgcggccac cgccgcctac caggtggagg 3601 gcgcggcggc cgagatgggc cgcacgccct ccatctggga caccttcagc cacacgcccg 3661 gccggaccct cggcggggac accggggacg tggcggccga ccacttccac cgctaccgcg 3721 acgacgtcgc cctgatgaag cggctcggac tccaggcgta ccgcttctcg gtctcctggt 3781 cccgcgtcca gcccaccggc cggggacccg ccgtggaacg cggcctcgac ttctaccgct 3841 cgctcgtcga cgagctgctc ctcgccggca tcaagcccgt cgccacgctc taccactggg 3901 acctgcccca ggagttggag gacgcgggcg gctggcccga gcgggcgacg gccgagcggt 3961 tcgcggagta cgcggccatc atggcccgcg ccctgggcga ccgcgtgggg atgtggacca 4021 cgctgaacga accctggtgc tcggccttcc tcggttacgg ctccggggtc cacgcccccg 4081 gccgcaccga accggccgcc gcgctgcggg ccgcccacca cctcaacctc gcccacggcc 4141 gggcgaccga ggcgctgcgc gcgaacctcc ccgctgccgc gcagacctcg gtcaccctca 4201 acctccacca ggtgcgcccg ctgaccggca gcgaggcgga cgcggacgcg gcccgccgga 4261 tcgacgcggt gggcaaccgc gtcttcaccg gtccgatgct gaagggcgcg tacccggagg 4321 acctgctggc cgacaccgaa cgcatcgtca actggggaga gctggtccgc gacggcgacc 4381 tcgccgcgat cgccgccccg atcgacgtgc tcggcgtcaa ctactacacg cccaccatcg 4441 tcagcacgcc cgcctccggc gcgggggaca cccgcaacga cggccacggc agcagcgacc 4501 actccccgtg gcccggctcg gagcacgtcg ccttccacct cgccgagggc cggccggtca 4561 ccgcgatgaa ctggtcggtc aagccggagg ggctgtacga cctcctcatg gacgtctcgc 4621 gcgagcaccc ggagctgccg ctgatggtca ccgagaacgg cgccgccttc gacgacgccc 4681 cggacgcgga cggccgggtc cacgacccgg agcggatcgc ctatctgcgc ggccacctgg 4741 aggcggtgcg ccgggcggcg gccgacggcg ccgacgtacg gggctacttc ctctggtcgc 4801 tgatggacaa cttcgagtgg ggctacggct atgcgaagcg cttcggcgcg gtctacgtcg 4861 actacgagac ccagctccgt acgccgaagt ccagcgccca ctggtacggc gaggtcatcg 4921 cccgccacgc gctgcccccg gaggcctgac ccggcggcag cccgttgaga gcggtgggcc 4981 cggtcgaccc cgaccgggcc caccgccttt ccgtcccctt cttgggagcg ctcccaatac 5041 actgtccgta cgctcgtcgg ggtgatcggt ccaggacttg gattgactgt acggctgtga 5101 gaaattgacc gggaacgggg aggcggccat ggcggcatcg cgagtacgga acggcgggcg 5161 gcccacgctc gaagaggtcg cggcacgggc cggggtcggc cggggcaccg cctcacgggt 5221 catcaacggc tcgccccggg tcagcgacgc cacccggcag gccgtcgagg cggccgtcgc 5281 cgaactgggg tacgtcccca accgcgccgc ccgcgccctg gcgggcaacc gcaccgacgc 5341 catcgcgctg gtggtccccg agccggagac ccgcttcttc gccgagccct acttctccgc 5401 catagtgcgc ggtgtcgggg cggccctggc cgacaccgag atgcagctgc tcctcaccct 5461 cgtcggcaac gaccgcgagc gccgcaggct cgcccagtac ctcaccgccc accgcgtcga 5521 cggggtcctc ctggtcgccg tgcacgccga tgacccgctg ccggagctcc tggagcagct 5581 gggcatgccc tgcgtgatca gcggcgcccg gcacgcggcc gagacgctgc cctcggtcga 5641 ctccgacaac ttcgagggcg cgcgggccgc cgtggagcac ctggtctccc ggggccgccg 5701 ccaggtggcc accatcaccg gccgcctgga ggtctacggc gcccagcgcc gcctggacgg 5761 ctaccgcgcc gcggtctccg ccgccggcct ggcccccgac gagcgcctga tcgccccggc 5821 cgacttcacc gaggagggcg gcgcccgggc catgcgcgac ctcctggccc gccgccccgg 5881 cctcgacgcc gtcttcgtgg cctccgacgt gatggccgcg ggcgcccgcc aggtcctgcg 5941 cgaggcggac cgccgcatcc ccgaggacgt ggccctgatc ggcttcgacg actcggtggt 6001 cgcccgccac atgcacccgg ccctcaccag cgtccgccag cccatcgagg agatgggccg 6061 ccggatggcc cagctcctcc tggacgagat cgcgggccgg gccccgggcg acgagcgccc 6121 ctcggtggtc ctgcccacgg agctggtggt ccgcgactcg tcgtga //