##gff-version 3
##sequence-region NZ_CP012938 1 16470
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides ovatus
# Note Bacteroides ovatus strain ATCC 8483 chromosome, complete genome.
# date 06-APR-2020
NZ_CP012938	GenBank	region	1	16470	.	+	1	ID=NZ_CP012938;Dbxref=BioProject:PRJNA224116,taxon:28116;Name=NZ_CP012938;Note=Bacteroides ovatus strain ATCC 8483 chromosome%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from CP012938. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP 2.0 and Celera v. AUG-2014 Genome Coverage :: 350X Sequencing Technology :: PacBio,Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/05/2020 01:05:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,918 CDSs (total) :: 4,825 Genes (coding) :: 4,751 CDSs (with protein) :: 4,751 Genes (RNA) :: 93 rRNAs :: 5,5,5 (5S,16S,23S) complete rRNAs :: 5,5,5 (5S,16S,23S) tRNAs :: 76 ncRNAs :: 2 Pseudo Genes (total) :: 74 CDSs (without protein) :: 74 Pseudo Genes (ambiguous residues) :: 0 of 74 Pseudo Genes (frameshifted) :: 25 of 74 Pseudo Genes (incomplete) :: 42 of 74 Pseudo Genes (internal stop) :: 16 of 74 Pseudo Genes (multiple problems) :: 8 of 74 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;collection_date=11-Oct-2009;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP012938. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP 2.0 and Celera v. AUG-2014 Genome Coverage :: 350X Sequencing Technology :: PacBio%3B Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/05/2020 01:05:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C918 CDSs (total) :: 4%2C825 Genes (coding) :: 4%2C751 CDSs (with protein) :: 4%2C751 Genes (RNA) :: 93 rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S) complete rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S) tRNAs :: 76 ncRNAs :: 2 Pseudo Genes (total) :: 74 CDSs (without protein) :: 74 Pseudo Genes (ambiguous residues) :: 0 of 74 Pseudo Genes (frameshifted) :: 25 of 74 Pseudo Genes (incomplete) :: 42 of 74 Pseudo Genes (internal stop) :: 16 of 74 Pseudo Genes (multiple problems) :: 8 of 74 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;country=USA:Woods Hole;culture_collection=ATCC:8483;date=06-APR-2020;host=Homo sapiens;isolation_source=feces;mol_type=genomic DNA;organism=Bacteroides ovatus;strain=ATCC 8483;type_material=type strain of Bacteroides ovatus
NZ_CP012938	GenBank	gene	1	2442	.	-	1	ID=Bovatus_RS23890;Dbxref=GeneID:29456010;Name=Bovatus_RS23890;old_locus_tag=Bovatus_04876
NZ_CP012938	GenBank	mRNA	1	2442	.	-	1	ID=Bovatus_RS23890.t01;Parent=Bovatus_RS23890
NZ_CP012938	GenBank	CDS	1	2442	.	-	1	ID=Bovatus_RS23890.p01;Parent=Bovatus_RS23890.t01;Dbxref=GeneID:29456010;Name=Bovatus_RS23890;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009000756.1;old_locus_tag=Bovatus_04876;product=glycoside hydrolase family 2 protein;protein_id=WP_052588048.1;transl_table=11;translation=length.813
NZ_CP012938	GenBank	exon	1	2442	.	-	1	Parent=Bovatus_RS23890.t01
NZ_CP012938	GenBank	gene	2514	3599	.	-	1	ID=Bovatus_RS23895;Dbxref=GeneID:29455164;Name=Bovatus_RS23895;old_locus_tag=Bovatus_04877
NZ_CP012938	GenBank	mRNA	2514	3599	.	-	1	ID=Bovatus_RS23895.t01;Parent=Bovatus_RS23895
NZ_CP012938	GenBank	CDS	2514	3599	.	-	1	ID=Bovatus_RS23895.p01;Parent=Bovatus_RS23895.t01;Dbxref=GeneID:29455164;Name=Bovatus_RS23895;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004325364.1;old_locus_tag=Bovatus_04877;product=arabinogalactan endo-1%2C4-beta-galactosidase;protein_id=WP_052588049.1;transl_table=11;translation=length.361
NZ_CP012938	GenBank	exon	2514	3599	.	-	1	Parent=Bovatus_RS23895.t01
NZ_CP012938	GenBank	gene	3645	5399	.	-	1	ID=Bovatus_RS23900;Dbxref=GeneID:29453547;Name=Bovatus_RS23900;old_locus_tag=Bovatus_04878
NZ_CP012938	GenBank	mRNA	3645	5399	.	-	1	ID=Bovatus_RS23900.t01;Parent=Bovatus_RS23900
NZ_CP012938	GenBank	CDS	3645	5399	.	-	1	ID=Bovatus_RS23900.p01;Parent=Bovatus_RS23900.t01;Dbxref=GeneID:29453547;Name=Bovatus_RS23900;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004312460.1;old_locus_tag=Bovatus_04878;product=DUF5114 domain-containing protein;protein_id=WP_004302203.1;transl_table=11;translation=length.584
NZ_CP012938	GenBank	exon	3645	5399	.	-	1	Parent=Bovatus_RS23900.t01
NZ_CP012938	GenBank	gene	5423	7003	.	-	1	ID=Bovatus_RS23905;Dbxref=GeneID:29455225;Name=Bovatus_RS23905;old_locus_tag=Bovatus_04879
NZ_CP012938	GenBank	mRNA	5423	7003	.	-	1	ID=Bovatus_RS23905.t01;Parent=Bovatus_RS23905
NZ_CP012938	GenBank	CDS	5423	7003	.	-	1	ID=Bovatus_RS23905.p01;Parent=Bovatus_RS23905.t01;Dbxref=GeneID:29455225;Name=Bovatus_RS23905;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004305745.1;old_locus_tag=Bovatus_04879;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_004302204.1;transl_table=11;translation=length.526
NZ_CP012938	GenBank	exon	5423	7003	.	-	1	Parent=Bovatus_RS23905.t01
NZ_CP012938	GenBank	gene	7022	9997	.	-	1	ID=Bovatus_RS23910;Dbxref=GeneID:29451570;Name=Bovatus_RS23910;old_locus_tag=Bovatus_04880
NZ_CP012938	GenBank	mRNA	7022	9997	.	-	1	ID=Bovatus_RS23910.t01;Parent=Bovatus_RS23910
NZ_CP012938	GenBank	CDS	7022	9997	.	-	1	ID=Bovatus_RS23910.p01;Parent=Bovatus_RS23910.t01;Dbxref=GeneID:29451570;Name=Bovatus_RS23910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005680364.1;old_locus_tag=Bovatus_04880;product=TonB-dependent receptor;protein_id=WP_004302205.1;transl_table=11;translation=length.991
NZ_CP012938	GenBank	exon	7022	9997	.	-	1	Parent=Bovatus_RS23910.t01
NZ_CP012938	GenBank	gene	10221	12830	.	-	1	ID=Bovatus_RS23915;Dbxref=GeneID:29454328;Name=Bovatus_RS23915;old_locus_tag=Bovatus_04881
NZ_CP012938	GenBank	mRNA	10221	12830	.	-	1	ID=Bovatus_RS23915.t01;Parent=Bovatus_RS23915
NZ_CP012938	GenBank	CDS	10221	12830	.	-	1	ID=Bovatus_RS23915.p01;Parent=Bovatus_RS23915.t01;Dbxref=GeneID:29454328;Name=Bovatus_RS23915;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008651432.1;old_locus_tag=Bovatus_04881;product=cellulase family glycosylhydrolase;protein_id=WP_004302207.1;transl_table=11;translation=length.869
NZ_CP012938	GenBank	exon	10221	12830	.	-	1	Parent=Bovatus_RS23915.t01
NZ_CP012938	GenBank	gene	12946	16470	.	-	1	ID=Bovatus_RS23920;Dbxref=GeneID:29452691;Name=Bovatus_RS23920;old_locus_tag=Bovatus_04882
NZ_CP012938	GenBank	mRNA	12946	16470	.	-	1	ID=Bovatus_RS23920.t01;Parent=Bovatus_RS23920
NZ_CP012938	GenBank	CDS	12946	16470	.	-	1	ID=Bovatus_RS23920.p01;Parent=Bovatus_RS23920.t01;Dbxref=GeneID:29452691;Name=Bovatus_RS23920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008651436.1;old_locus_tag=Bovatus_04882;product=helix-turn-helix domain-containing protein;protein_id=WP_004302208.1;transl_table=11;translation=length.1174
NZ_CP012938	GenBank	exon	12946	16470	.	-	1	Parent=Bovatus_RS23920.t01