##gff-version 3
##sequence-region NC_006347 1 13875
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	13875	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	300	.	+	1	ID=BF_RS13895;Name=BF_RS13895;old_locus_tag=BF2921
NC_006347	GenBank	mRNA	1	300	.	+	1	ID=BF_RS13895.t01;Parent=BF_RS13895
NC_006347	GenBank	CDS	1	300	.	+	1	ID=BF_RS13895.p01;Parent=BF_RS13895.t01;Name=BF_RS13895;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008777440.1;old_locus_tag=BF2921;product=hypothetical protein;protein_id=WP_008777440.1;transl_table=11;translation=length.99
NC_006347	GenBank	exon	1	300	.	+	1	Parent=BF_RS13895.t01
NC_006347	GenBank	pseudogenic_exon	726	1220	.	+	1	ID=BF_RS13900;Name=BF_RS13900;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014299082.1;old_locus_tag=BF2922;product=alpha-1%2C2-fucosyltransferase;pseudo=_no_value;transl_table=11
NC_006347	GenBank	pseudogene	726	1220	.	+	1	ID=BF_RS13900.pseudogene;Alias=BF_RS13900;Name=BF_RS13900;old_locus_tag=BF2922;pseudo=_no_value
NC_006347	GenBank	gene	1227	2345	.	+	1	ID=BF_RS13905;Name=BF_RS13905;old_locus_tag=BF2923
NC_006347	GenBank	mRNA	1227	2345	.	+	1	ID=BF_RS13905.t01;Parent=BF_RS13905
NC_006347	GenBank	CDS	1227	2345	.	+	1	ID=BF_RS13905.p01;Parent=BF_RS13905.t01;Name=BF_RS13905;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203057.1;old_locus_tag=BF2923;product=glycosyltransferase family 4 protein;protein_id=WP_011203057.1;transl_table=11;translation=length.372
NC_006347	GenBank	exon	1227	2345	.	+	1	Parent=BF_RS13905.t01
NC_006347	GenBank	gene	2351	3439	.	+	1	ID=BF_RS13910;Name=BF_RS13910;old_locus_tag=BF2924
NC_006347	GenBank	mRNA	2351	3439	.	+	1	ID=BF_RS13910.t01;Parent=BF_RS13910
NC_006347	GenBank	CDS	2351	3439	.	+	1	ID=BF_RS13910.p01;Parent=BF_RS13910.t01;Name=BF_RS13910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014299083.1;old_locus_tag=BF2924;product=glycosyltransferase family 4 protein;protein_id=WP_011203058.1;transl_table=11;translation=length.362
NC_006347	GenBank	exon	2351	3439	.	+	1	Parent=BF_RS13910.t01
NC_006347	GenBank	gene	3453	4526	.	+	1	ID=BF_RS13915;Name=BF_RS13915;old_locus_tag=BF2925
NC_006347	GenBank	mRNA	3453	4526	.	+	1	ID=BF_RS13915.t01;Parent=BF_RS13915
NC_006347	GenBank	CDS	3453	4526	.	+	1	ID=BF_RS13915.p01;Parent=BF_RS13915.t01;Name=BF_RS13915;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005788649.1;old_locus_tag=BF2925;product=glycosyltransferase;protein_id=WP_164927417.1;transl_table=11;translation=length.357
NC_006347	GenBank	exon	3453	4526	.	+	1	Parent=BF_RS13915.t01
NC_006347	GenBank	gene	4696	5415	.	+	1	ID=BF_RS13920;Name=BF_RS13920;old_locus_tag=BF2926
NC_006347	GenBank	mRNA	4696	5415	.	+	1	ID=BF_RS13920.t01;Parent=BF_RS13920
NC_006347	GenBank	CDS	4696	5415	.	+	1	ID=BF_RS13920.p01;Parent=BF_RS13920.t01;Name=BF_RS13920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005788650.1;old_locus_tag=BF2926;product=WecB/TagA/CpsF family glycosyltransferase;protein_id=WP_011203060.1;transl_table=11;translation=length.239
NC_006347	GenBank	exon	4696	5415	.	+	1	Parent=BF_RS13920.t01
NC_006347	GenBank	gene	5425	6129	.	+	1	ID=BF_RS13925;Name=BF_RS13925;old_locus_tag=BF2927
NC_006347	GenBank	mRNA	5425	6129	.	+	1	ID=BF_RS13925.t01;Parent=BF_RS13925
NC_006347	GenBank	CDS	5425	6129	.	+	1	ID=BF_RS13925.p01;Parent=BF_RS13925.t01;Name=BF_RS13925;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008769761.1;old_locus_tag=BF2927;product=hypothetical protein;protein_id=WP_011203061.1;transl_table=11;translation=length.234
NC_006347	GenBank	exon	5425	6129	.	+	1	Parent=BF_RS13925.t01
NC_006347	GenBank	gene	6135	7376	.	+	1	ID=BF_RS13930;Name=BF_RS13930;old_locus_tag=BF2928
NC_006347	GenBank	mRNA	6135	7376	.	+	1	ID=BF_RS13930.t01;Parent=BF_RS13930
NC_006347	GenBank	CDS	6135	7376	.	+	1	ID=BF_RS13930.p01;Parent=BF_RS13930.t01;Name=BF_RS13930;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010993141.1;old_locus_tag=BF2928;product=hypothetical protein;protein_id=WP_005788655.1;transl_table=11;translation=length.413
NC_006347	GenBank	exon	6135	7376	.	+	1	Parent=BF_RS13930.t01
NC_006347	GenBank	gene	7402	8688	.	+	1	ID=BF_RS13935;Name=BF_RS13935;old_locus_tag=BF2929
NC_006347	GenBank	mRNA	7402	8688	.	+	1	ID=BF_RS13935.t01;Parent=BF_RS13935
NC_006347	GenBank	CDS	7402	8688	.	+	1	ID=BF_RS13935.p01;Parent=BF_RS13935.t01;Name=BF_RS13935;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008769759.1;old_locus_tag=BF2929;product=carboxypeptidase regulatory-like domain-containing protein;protein_id=WP_008660805.1;transl_table=11;translation=length.428
NC_006347	GenBank	exon	7402	8688	.	+	1	Parent=BF_RS13935.t01
NC_006347	GenBank	gene	8728	9303	.	+	1	ID=BF_RS13940;Name=BF_RS13940;old_locus_tag=BF2930
NC_006347	GenBank	mRNA	8728	9303	.	+	1	ID=BF_RS13940.t01;Parent=BF_RS13940
NC_006347	GenBank	CDS	8728	9303	.	+	1	ID=BF_RS13940.p01;Parent=BF_RS13940.t01;Name=BF_RS13940;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005788659.1;old_locus_tag=BF2930;product=hypothetical protein;protein_id=WP_005815284.1;transl_table=11;translation=length.191
NC_006347	GenBank	exon	8728	9303	.	+	1	Parent=BF_RS13940.t01
NC_006347	GenBank	gene	9409	9921	.	+	1	ID=BF_RS13945;Name=gldL;locus_tag=BF_RS13945;old_locus_tag=BF2931
NC_006347	GenBank	mRNA	9409	9921	.	+	1	ID=BF_RS13945.t01;Parent=BF_RS13945
NC_006347	GenBank	CDS	9409	9921	.	+	1	ID=BF_RS13945.p01;Parent=BF_RS13945.t01;Name=gldL;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005820742.1;locus_tag=BF_RS13945;old_locus_tag=BF2931;product=gliding motility protein GldL;protein_id=WP_005788660.1;transl_table=11;translation=length.170
NC_006347	GenBank	exon	9409	9921	.	+	1	Parent=BF_RS13945.t01
NC_006347	GenBank	gene	9933	11249	.	+	1	ID=BF_RS13950;Name=BF_RS13950;old_locus_tag=BF2932
NC_006347	GenBank	mRNA	9933	11249	.	+	1	ID=BF_RS13950.t01;Parent=BF_RS13950
NC_006347	GenBank	CDS	9933	11249	.	+	1	ID=BF_RS13950.p01;Parent=BF_RS13950.t01;Name=BF_RS13950;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005803170.1;old_locus_tag=BF2932;product=hypothetical protein;protein_id=WP_011203062.1;transl_table=11;translation=length.438
NC_006347	GenBank	exon	9933	11249	.	+	1	Parent=BF_RS13950.t01
NC_006347	GenBank	gene	11257	12354	.	+	1	ID=BF_RS13955;Name=BF_RS13955;old_locus_tag=BF2933
NC_006347	GenBank	mRNA	11257	12354	.	+	1	ID=BF_RS13955.t01;Parent=BF_RS13955
NC_006347	GenBank	CDS	11257	12354	.	+	1	ID=BF_RS13955.p01;Parent=BF_RS13955.t01;Name=BF_RS13955;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008660808.1;old_locus_tag=BF2933;product=OmpA family protein;protein_id=WP_011203063.1;transl_table=11;translation=length.365
NC_006347	GenBank	exon	11257	12354	.	+	1	Parent=BF_RS13955.t01
NC_006347	GenBank	gene	12382	12810	.	+	1	ID=BF_RS13960;Name=BF_RS13960;old_locus_tag=BF2934
NC_006347	GenBank	mRNA	12382	12810	.	+	1	ID=BF_RS13960.t01;Parent=BF_RS13960
NC_006347	GenBank	CDS	12382	12810	.	+	1	ID=BF_RS13960.p01;Parent=BF_RS13960.t01;Name=BF_RS13960;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009293222.1;old_locus_tag=BF2934;product=hypothetical protein;protein_id=WP_005788667.1;transl_table=11;translation=length.142
NC_006347	GenBank	exon	12382	12810	.	+	1	Parent=BF_RS13960.t01
NC_006347	GenBank	gene	12826	13875	.	+	1	ID=BF_RS13965;Name=BF_RS13965;old_locus_tag=BF2935
NC_006347	GenBank	mRNA	12826	13875	.	+	1	ID=BF_RS13965.t01;Parent=BF_RS13965
NC_006347	GenBank	CDS	12826	13875	.	+	1	ID=BF_RS13965.p01;Parent=BF_RS13965.t01;Name=BF_RS13965;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009293221.1;old_locus_tag=BF2935;product=mannose-1-phosphate guanylyltransferase;protein_id=WP_011203064.1;transl_table=11;translation=length.349
NC_006347	GenBank	exon	12826	13875	.	+	1	Parent=BF_RS13965.t01