##gff-version 3
##sequence-region NC_006347 1 18445
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	18445	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	717	.	-	1	ID=BF_RS17300;Name=BF_RS17300;old_locus_tag=BF3646
NC_006347	GenBank	mRNA	1	717	.	-	1	ID=BF_RS17300.t01;Parent=BF_RS17300
NC_006347	GenBank	CDS	1	717	.	-	1	ID=BF_RS17300.p01;Parent=BF_RS17300.t01;Name=BF_RS17300;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009292664.1;old_locus_tag=BF3646;product=capsular polysaccharide biosynthesis protein;protein_id=WP_011203383.1;transl_table=11;translation=length.238
NC_006347	GenBank	exon	1	717	.	-	1	Parent=BF_RS17300.t01
NC_006347	GenBank	gene	725	1714	.	-	1	ID=BF_RS17305;Name=BF_RS17305;old_locus_tag=BF3647
NC_006347	GenBank	mRNA	725	1714	.	-	1	ID=BF_RS17305.t01;Parent=BF_RS17305
NC_006347	GenBank	CDS	725	1714	.	-	1	ID=BF_RS17305.p01;Parent=BF_RS17305.t01;Name=BF_RS17305;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004300024.1;old_locus_tag=BF3647;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_011203384.1;transl_table=11;translation=length.329
NC_006347	GenBank	exon	725	1714	.	-	1	Parent=BF_RS17305.t01
NC_006347	GenBank	gene	1711	2484	.	-	1	ID=BF_RS17310;Name=BF_RS17310;old_locus_tag=BF3648
NC_006347	GenBank	mRNA	1711	2484	.	-	1	ID=BF_RS17310.t01;Parent=BF_RS17310
NC_006347	GenBank	CDS	1711	2484	.	-	1	ID=BF_RS17310.p01;Parent=BF_RS17310.t01;Name=BF_RS17310;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005681212.1;old_locus_tag=BF3648;product=glycosyltransferase;protein_id=WP_011203385.1;transl_table=11;translation=length.257
NC_006347	GenBank	exon	1711	2484	.	-	1	Parent=BF_RS17310.t01
NC_006347	GenBank	gene	2471	3493	.	-	1	ID=BF_RS17315;Name=BF_RS17315;old_locus_tag=BF3649
NC_006347	GenBank	mRNA	2471	3493	.	-	1	ID=BF_RS17315.t01;Parent=BF_RS17315
NC_006347	GenBank	CDS	2471	3493	.	-	1	ID=BF_RS17315.p01;Parent=BF_RS17315.t01;Name=BF_RS17315;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790509.1;old_locus_tag=BF3649;product=glycosyltransferase;protein_id=WP_011203386.1;transl_table=11;translation=length.340
NC_006347	GenBank	exon	2471	3493	.	-	1	Parent=BF_RS17315.t01
NC_006347	GenBank	gene	3552	4397	.	-	1	ID=BF_RS17320;Name=BF_RS17320;old_locus_tag=BF3650
NC_006347	GenBank	mRNA	3552	4397	.	-	1	ID=BF_RS17320.t01;Parent=BF_RS17320
NC_006347	GenBank	CDS	3552	4397	.	-	1	ID=BF_RS17320.p01;Parent=BF_RS17320.t01;Name=BF_RS17320;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802416.1;old_locus_tag=BF3650;product=glycosyltransferase family 2 protein;protein_id=WP_011203387.1;transl_table=11;translation=length.281
NC_006347	GenBank	exon	3552	4397	.	-	1	Parent=BF_RS17320.t01
NC_006347	GenBank	gene	4400	5479	.	-	1	ID=BF_RS17325;Name=BF_RS17325;old_locus_tag=BF3651
NC_006347	GenBank	mRNA	4400	5479	.	-	1	ID=BF_RS17325.t01;Parent=BF_RS17325
NC_006347	GenBank	CDS	4400	5479	.	-	1	ID=BF_RS17325.p01;Parent=BF_RS17325.t01;Name=BF_RS17325;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203388.1;old_locus_tag=BF3651;product=EpsG family protein;protein_id=WP_011203388.1;transl_table=11;translation=length.359
NC_006347	GenBank	exon	4400	5479	.	-	1	Parent=BF_RS17325.t01
NC_006347	GenBank	gene	5476	6192	.	-	1	ID=BF_RS17330;Name=BF_RS17330;old_locus_tag=BF3652
NC_006347	GenBank	mRNA	5476	6192	.	-	1	ID=BF_RS17330.t01;Parent=BF_RS17330
NC_006347	GenBank	CDS	5476	6192	.	-	1	ID=BF_RS17330.p01;Parent=BF_RS17330.t01;Name=BF_RS17330;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203389.1;old_locus_tag=BF3652;product=glycosyl transferase;protein_id=WP_011203389.1;transl_table=11;translation=length.238
NC_006347	GenBank	exon	5476	6192	.	-	1	Parent=BF_RS17330.t01
NC_006347	GenBank	gene	6189	6809	.	-	1	ID=BF_RS17335;Name=BF_RS17335;old_locus_tag=BF3653
NC_006347	GenBank	mRNA	6189	6809	.	-	1	ID=BF_RS17335.t01;Parent=BF_RS17335
NC_006347	GenBank	CDS	6189	6809	.	-	1	ID=BF_RS17335.p01;Parent=BF_RS17335.t01;Name=BF_RS17335;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802413.1;old_locus_tag=BF3653;product=CatB-related O-acetyltransferase;protein_id=WP_032543698.1;transl_table=11;translation=length.206
NC_006347	GenBank	exon	6189	6809	.	-	1	Parent=BF_RS17335.t01
NC_006347	GenBank	gene	6812	7864	.	-	1	ID=BF_RS17340;Name=BF_RS17340;old_locus_tag=BF3654
NC_006347	GenBank	mRNA	6812	7864	.	-	1	ID=BF_RS17340.t01;Parent=BF_RS17340
NC_006347	GenBank	CDS	6812	7864	.	-	1	ID=BF_RS17340.p01;Parent=BF_RS17340.t01;Name=BF_RS17340;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802412.1;old_locus_tag=BF3654;product=glycosyltransferase family 2 protein;protein_id=WP_011203391.1;transl_table=11;translation=length.350
NC_006347	GenBank	exon	6812	7864	.	-	1	Parent=BF_RS17340.t01
NC_006347	GenBank	gene	7944	9116	.	-	1	ID=BF_RS17345;Name=BF_RS17345;old_locus_tag=BF3655
NC_006347	GenBank	mRNA	7944	9116	.	-	1	ID=BF_RS17345.t01;Parent=BF_RS17345
NC_006347	GenBank	CDS	7944	9116	.	-	1	ID=BF_RS17345.p01;Parent=BF_RS17345.t01;Name=BF_RS17345;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012744.1%2CHMM:NF024831.1;old_locus_tag=BF3655;product=glycosyltransferase;protein_id=WP_164927389.1;transl_table=11;translation=length.390
NC_006347	GenBank	exon	7944	9116	.	-	1	Parent=BF_RS17345.t01
NC_006347	GenBank	gene	9121	10275	.	-	1	ID=BF_RS17350;Name=wecB;locus_tag=BF_RS17350;old_locus_tag=BF3656
NC_006347	GenBank	mRNA	9121	10275	.	-	1	ID=BF_RS17350.t01;Parent=BF_RS17350
NC_006347	GenBank	CDS	9121	10275	.	-	1	ID=BF_RS17350.p01;Parent=BF_RS17350.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802409.1;locus_tag=BF_RS17350;old_locus_tag=BF3656;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_011203393.1;transl_table=11;translation=length.384
NC_006347	GenBank	exon	9121	10275	.	-	1	Parent=BF_RS17350.t01
NC_006347	GenBank	gene	10300	11280	.	-	1	ID=BF_RS17355;Name=BF_RS17355;old_locus_tag=BF3657
NC_006347	GenBank	mRNA	10300	11280	.	-	1	ID=BF_RS17355.t01;Parent=BF_RS17355
NC_006347	GenBank	CDS	10300	11280	.	-	1	ID=BF_RS17355.p01;Parent=BF_RS17355.t01;Name=BF_RS17355;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203394.1;old_locus_tag=BF3657;product=glycosyltransferase;protein_id=WP_011203394.1;transl_table=11;translation=length.326
NC_006347	GenBank	exon	10300	11280	.	-	1	Parent=BF_RS17355.t01
NC_006347	GenBank	gene	11301	12770	.	-	1	ID=BF_RS17360;Name=BF_RS17360;old_locus_tag=BF3658
NC_006347	GenBank	mRNA	11301	12770	.	-	1	ID=BF_RS17360.t01;Parent=BF_RS17360
NC_006347	GenBank	CDS	11301	12770	.	-	1	ID=BF_RS17360.p01;Parent=BF_RS17360.t01;Name=BF_RS17360;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017142055.1;old_locus_tag=BF3658;product=O-antigen translocase;protein_id=WP_011203395.1;transl_table=11;translation=length.489
NC_006347	GenBank	exon	11301	12770	.	-	1	Parent=BF_RS17360.t01
NC_006347	GenBank	gene	12816	13913	.	-	1	ID=BF_RS17365;Name=BF_RS17365;old_locus_tag=BF3659
NC_006347	GenBank	mRNA	12816	13913	.	-	1	ID=BF_RS17365.t01;Parent=BF_RS17365
NC_006347	GenBank	CDS	12816	13913	.	-	1	ID=BF_RS17365.p01;Parent=BF_RS17365.t01;Name=BF_RS17365;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802405.1;old_locus_tag=BF3659;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_011203396.1;transl_table=11;translation=length.365
NC_006347	GenBank	exon	12816	13913	.	-	1	Parent=BF_RS17365.t01
NC_006347	GenBank	gene	13898	15100	.	-	1	ID=BF_RS17370;Name=BF_RS17370;old_locus_tag=BF3660
NC_006347	GenBank	mRNA	13898	15100	.	-	1	ID=BF_RS17370.t01;Parent=BF_RS17370
NC_006347	GenBank	CDS	13898	15100	.	-	1	ID=BF_RS17370.p01;Parent=BF_RS17370.t01;Name=BF_RS17370;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203397.1;old_locus_tag=BF3660;product=hypothetical protein;protein_id=WP_011203397.1;transl_table=11;translation=length.400
NC_006347	GenBank	exon	13898	15100	.	-	1	Parent=BF_RS17370.t01
NC_006347	GenBank	gene	15072	15509	.	-	1	ID=BF_RS17375;Name=BF_RS17375;old_locus_tag=BF3661
NC_006347	GenBank	mRNA	15072	15509	.	-	1	ID=BF_RS17375.t01;Parent=BF_RS17375
NC_006347	GenBank	CDS	15072	15509	.	-	1	ID=BF_RS17375.p01;Parent=BF_RS17375.t01;Name=BF_RS17375;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802402.1;old_locus_tag=BF3661;product=WxcM-like domain-containing protein;protein_id=WP_005802402.1;transl_table=11;translation=length.145
NC_006347	GenBank	exon	15072	15509	.	-	1	Parent=BF_RS17375.t01
NC_006347	GenBank	gene	15509	16054	.	-	1	ID=BF_RS17380;Name=BF_RS17380;old_locus_tag=BF3662
NC_006347	GenBank	mRNA	15509	16054	.	-	1	ID=BF_RS17380.t01;Parent=BF_RS17380
NC_006347	GenBank	CDS	15509	16054	.	-	1	ID=BF_RS17380.p01;Parent=BF_RS17380.t01;Name=BF_RS17380;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802401.1;old_locus_tag=BF3662;product=WxcM-like domain-containing protein;protein_id=WP_005802401.1;transl_table=11;translation=length.181
NC_006347	GenBank	exon	15509	16054	.	-	1	Parent=BF_RS17380.t01
NC_006347	GenBank	gene	16056	16463	.	-	1	ID=BF_RS17385;Name=BF_RS17385;old_locus_tag=BF3663
NC_006347	GenBank	mRNA	16056	16463	.	-	1	ID=BF_RS17385.t01;Parent=BF_RS17385
NC_006347	GenBank	CDS	16056	16463	.	-	1	ID=BF_RS17385.p01;Parent=BF_RS17385.t01;Name=BF_RS17385;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802400.1;old_locus_tag=BF3663;product=WxcM-like domain-containing protein;protein_id=WP_005802400.1;transl_table=11;translation=length.135
NC_006347	GenBank	exon	16056	16463	.	-	1	Parent=BF_RS17385.t01
NC_006347	GenBank	gene	16453	17346	.	-	1	ID=BF_RS17390;Name=rfbA;locus_tag=BF_RS17390;old_locus_tag=BF3664
NC_006347	GenBank	mRNA	16453	17346	.	-	1	ID=BF_RS17390.t01;Parent=BF_RS17390
NC_006347	GenBank	CDS	16453	17346	.	-	1	ID=BF_RS17390.p01;Parent=BF_RS17390.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005802398.1;locus_tag=BF_RS17390;old_locus_tag=BF3664;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_005802398.1;transl_table=11;translation=length.297
NC_006347	GenBank	exon	16453	17346	.	-	1	Parent=BF_RS17390.t01
NC_006347	GenBank	gene	17348	18445	.	-	1	ID=BF_RS17395;Name=BF_RS17395;old_locus_tag=BF3665
NC_006347	GenBank	mRNA	17348	18445	.	-	1	ID=BF_RS17395.t01;Parent=BF_RS17395
NC_006347	GenBank	CDS	17348	18445	.	-	1	ID=BF_RS17395.p01;Parent=BF_RS17395.t01;Name=BF_RS17395;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790532.1;old_locus_tag=BF3665;product=undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase;protein_id=WP_005790532.1;transl_table=11;translation=length.365
NC_006347	GenBank	exon	17348	18445	.	-	1	Parent=BF_RS17395.t01