##gff-version 3
##sequence-region NC_006347 1 21113
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	21113	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	888	.	+	1	ID=BF_RS03800;Name=rfbA;locus_tag=BF_RS03800;old_locus_tag=BF0805
NC_006347	GenBank	mRNA	1	888	.	+	1	ID=BF_RS03800.t01;Parent=BF_RS03800
NC_006347	GenBank	CDS	1	888	.	+	1	ID=BF_RS03800.p01;Parent=BF_RS03800.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005809401.1;locus_tag=BF_RS03800;old_locus_tag=BF0805;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_011202141.1;transl_table=11;translation=length.295
NC_006347	GenBank	exon	1	888	.	+	1	Parent=BF_RS03800.t01
NC_006347	GenBank	gene	891	1460	.	+	1	ID=BF_RS03805;Name=rfbC;locus_tag=BF_RS03805;old_locus_tag=BF0806
NC_006347	GenBank	mRNA	891	1460	.	+	1	ID=BF_RS03805.t01;Parent=BF_RS03805
NC_006347	GenBank	CDS	891	1460	.	+	1	ID=BF_RS03805.p01;Parent=BF_RS03805.t01;eC_number=5.1.3.13;Name=rfbC;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002561544.1;locus_tag=BF_RS03805;old_locus_tag=BF0806;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_011202142.1;transl_table=11;translation=length.189
NC_006347	GenBank	exon	891	1460	.	+	1	Parent=BF_RS03805.t01
NC_006347	GenBank	gene	1462	2532	.	+	1	ID=BF_RS03810;Name=rfbB;locus_tag=BF_RS03810;old_locus_tag=BF0807
NC_006347	GenBank	mRNA	1462	2532	.	+	1	ID=BF_RS03810.t01;Parent=BF_RS03810
NC_006347	GenBank	CDS	1462	2532	.	+	1	ID=BF_RS03810.p01;Parent=BF_RS03810.t01;eC_number=4.2.1.46;Name=rfbB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002561542.1;locus_tag=BF_RS03810;old_locus_tag=BF0807;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_011202143.1;transl_table=11;translation=length.356
NC_006347	GenBank	exon	1462	2532	.	+	1	Parent=BF_RS03810.t01
NC_006347	GenBank	gene	2540	3988	.	+	1	ID=BF_RS03815;Name=BF_RS03815;old_locus_tag=BF0808
NC_006347	GenBank	mRNA	2540	3988	.	+	1	ID=BF_RS03815.t01;Parent=BF_RS03815
NC_006347	GenBank	CDS	2540	3988	.	+	1	ID=BF_RS03815.p01;Parent=BF_RS03815.t01;Name=BF_RS03815;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009126874.1;old_locus_tag=BF0808;product=lipopolysaccharide biosynthesis protein;protein_id=WP_011202144.1;transl_table=11;translation=length.482
NC_006347	GenBank	exon	2540	3988	.	+	1	Parent=BF_RS03815.t01
NC_006347	GenBank	gene	3995	5377	.	+	1	ID=BF_RS03820;Name=BF_RS03820;old_locus_tag=BF0809
NC_006347	GenBank	mRNA	3995	5377	.	+	1	ID=BF_RS03820.t01;Parent=BF_RS03820
NC_006347	GenBank	CDS	3995	5377	.	+	1	ID=BF_RS03820.p01;Parent=BF_RS03820.t01;Name=BF_RS03820;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007486710.1;old_locus_tag=BF0809;product=dNDP-4-keto-6-deoxy-glucose-2%2C3- dehydratase;protein_id=WP_011202145.1;transl_table=11;translation=length.460
NC_006347	GenBank	exon	3995	5377	.	+	1	Parent=BF_RS03820.t01
NC_006347	GenBank	gene	5382	6362	.	+	1	ID=BF_RS03825;Name=BF_RS03825;old_locus_tag=BF0810
NC_006347	GenBank	mRNA	5382	6362	.	+	1	ID=BF_RS03825.t01;Parent=BF_RS03825
NC_006347	GenBank	CDS	5382	6362	.	+	1	ID=BF_RS03825.p01;Parent=BF_RS03825.t01;Name=BF_RS03825;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007213716.1;old_locus_tag=BF0810;product=Gfo/Idh/MocA family oxidoreductase;protein_id=WP_011202146.1;transl_table=11;translation=length.326
NC_006347	GenBank	exon	5382	6362	.	+	1	Parent=BF_RS03825.t01
NC_006347	GenBank	gene	6349	7431	.	+	1	ID=BF_RS03830;Name=BF_RS03830;old_locus_tag=BF0811
NC_006347	GenBank	mRNA	6349	7431	.	+	1	ID=BF_RS03830.t01;Parent=BF_RS03830
NC_006347	GenBank	CDS	6349	7431	.	+	1	ID=BF_RS03830.p01;Parent=BF_RS03830.t01;Name=BF_RS03830;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007486712.1;old_locus_tag=BF0811;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_011202147.1;transl_table=11;translation=length.360
NC_006347	GenBank	exon	6349	7431	.	+	1	Parent=BF_RS03830.t01
NC_006347	GenBank	gene	7457	8599	.	+	1	ID=BF_RS03835;Name=BF_RS03835;old_locus_tag=BF0812
NC_006347	GenBank	mRNA	7457	8599	.	+	1	ID=BF_RS03835.t01;Parent=BF_RS03835
NC_006347	GenBank	CDS	7457	8599	.	+	1	ID=BF_RS03835.p01;Parent=BF_RS03835.t01;Name=BF_RS03835;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BF0812;product=glycosyltransferase;protein_id=WP_032591456.1;transl_table=11;translation=length.380
NC_006347	GenBank	exon	7457	8599	.	+	1	Parent=BF_RS03835.t01
NC_006347	GenBank	gene	8633	9475	.	+	1	ID=BF_RS03840;Name=BF_RS03840;old_locus_tag=BF0813
NC_006347	GenBank	mRNA	8633	9475	.	+	1	ID=BF_RS03840.t01;Parent=BF_RS03840
NC_006347	GenBank	CDS	8633	9475	.	+	1	ID=BF_RS03840.p01;Parent=BF_RS03840.t01;Name=BF_RS03840;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF025025.1;old_locus_tag=BF0813;product=glycosyltransferase;protein_id=WP_162484906.1;transl_table=11;translation=length.280
NC_006347	GenBank	exon	8633	9475	.	+	1	Parent=BF_RS03840.t01
NC_006347	GenBank	gene	9477	10493	.	+	1	ID=BF_RS03845;Name=BF_RS03845;old_locus_tag=BF0814
NC_006347	GenBank	mRNA	9477	10493	.	+	1	ID=BF_RS03845.t01;Parent=BF_RS03845
NC_006347	GenBank	CDS	9477	10493	.	+	1	ID=BF_RS03845.p01;Parent=BF_RS03845.t01;Name=BF_RS03845;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790509.1;old_locus_tag=BF0814;product=glycosyltransferase;protein_id=WP_011202150.1;transl_table=11;translation=length.338
NC_006347	GenBank	exon	9477	10493	.	+	1	Parent=BF_RS03845.t01
NC_006347	GenBank	gene	10497	11594	.	+	1	ID=BF_RS03850;Name=BF_RS03850;old_locus_tag=BF0815
NC_006347	GenBank	mRNA	10497	11594	.	+	1	ID=BF_RS03850.t01;Parent=BF_RS03850
NC_006347	GenBank	CDS	10497	11594	.	+	1	ID=BF_RS03850.p01;Parent=BF_RS03850.t01;Name=BF_RS03850;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790511.1;old_locus_tag=BF0815;product=EpsG family protein;protein_id=WP_011202151.1;transl_table=11;translation=length.365
NC_006347	GenBank	exon	10497	11594	.	+	1	Parent=BF_RS03850.t01
NC_006347	GenBank	gene	11598	12719	.	+	1	ID=BF_RS03855;Name=BF_RS03855;old_locus_tag=BF0816
NC_006347	GenBank	mRNA	11598	12719	.	+	1	ID=BF_RS03855.t01;Parent=BF_RS03855
NC_006347	GenBank	CDS	11598	12719	.	+	1	ID=BF_RS03855.p01;Parent=BF_RS03855.t01;Name=BF_RS03855;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924906.1;old_locus_tag=BF0816;product=glycosyltransferase family 4 protein;protein_id=WP_011202152.1;transl_table=11;translation=length.373
NC_006347	GenBank	exon	11598	12719	.	+	1	Parent=BF_RS03855.t01
NC_006347	GenBank	gene	12709	13317	.	+	1	ID=BF_RS03860;Name=BF_RS03860;old_locus_tag=BF0817
NC_006347	GenBank	mRNA	12709	13317	.	+	1	ID=BF_RS03860.t01;Parent=BF_RS03860
NC_006347	GenBank	CDS	12709	13317	.	+	1	ID=BF_RS03860.p01;Parent=BF_RS03860.t01;Name=BF_RS03860;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007485209.1;old_locus_tag=BF0817;product=sugar transferase;protein_id=WP_011202153.1;transl_table=11;translation=length.202
NC_006347	GenBank	exon	12709	13317	.	+	1	Parent=BF_RS03860.t01
NC_006347	GenBank	gene	13321	13962	.	+	1	ID=BF_RS03865;Name=BF_RS03865;old_locus_tag=BF0818
NC_006347	GenBank	mRNA	13321	13962	.	+	1	ID=BF_RS03865.t01;Parent=BF_RS03865
NC_006347	GenBank	CDS	13321	13962	.	+	1	ID=BF_RS03865.p01;Parent=BF_RS03865.t01;Name=BF_RS03865;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005775527.1;old_locus_tag=BF0818;product=acetyltransferase;protein_id=WP_005775527.1;transl_table=11;translation=length.213
NC_006347	GenBank	exon	13321	13962	.	+	1	Parent=BF_RS03865.t01
NC_006347	GenBank	gene	13975	14205	.	+	1	ID=BF_RS03870;Name=BF_RS03870;old_locus_tag=BF0819
NC_006347	GenBank	mRNA	13975	14205	.	+	1	ID=BF_RS03870.t01;Parent=BF_RS03870
NC_006347	GenBank	CDS	13975	14205	.	+	1	ID=BF_RS03870.p01;Parent=BF_RS03870.t01;Name=BF_RS03870;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005775528.1;old_locus_tag=BF0819;product=acyl carrier protein;protein_id=WP_005775528.1;transl_table=11;translation=length.76
NC_006347	GenBank	exon	13975	14205	.	+	1	Parent=BF_RS03870.t01
NC_006347	GenBank	gene	14205	15260	.	+	1	ID=BF_RS03875;Name=BF_RS03875;old_locus_tag=BF0820
NC_006347	GenBank	mRNA	14205	15260	.	+	1	ID=BF_RS03875.t01;Parent=BF_RS03875
NC_006347	GenBank	CDS	14205	15260	.	+	1	ID=BF_RS03875.p01;Parent=BF_RS03875.t01;Name=BF_RS03875;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005796138.1;old_locus_tag=BF0820;product=ketoacyl-ACP synthase III;protein_id=WP_011202154.1;transl_table=11;translation=length.351
NC_006347	GenBank	exon	14205	15260	.	+	1	Parent=BF_RS03875.t01
NC_006347	GenBank	gene	15266	16018	.	+	1	ID=BF_RS03880;Name=BF_RS03880;old_locus_tag=BF0821
NC_006347	GenBank	mRNA	15266	16018	.	+	1	ID=BF_RS03880.t01;Parent=BF_RS03880
NC_006347	GenBank	CDS	15266	16018	.	+	1	ID=BF_RS03880.p01;Parent=BF_RS03880.t01;Name=BF_RS03880;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005801362.1;old_locus_tag=BF0821;product=SDR family oxidoreductase;protein_id=WP_005801362.1;transl_table=11;translation=length.250
NC_006347	GenBank	exon	15266	16018	.	+	1	Parent=BF_RS03880.t01
NC_006347	GenBank	gene	16022	17071	.	+	1	ID=BF_RS03885;Name=BF_RS03885;old_locus_tag=BF0822
NC_006347	GenBank	mRNA	16022	17071	.	+	1	ID=BF_RS03885.t01;Parent=BF_RS03885
NC_006347	GenBank	CDS	16022	17071	.	+	1	ID=BF_RS03885.p01;Parent=BF_RS03885.t01;Name=BF_RS03885;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005775532.1;old_locus_tag=BF0822;product=ketoacyl-ACP synthase III;protein_id=WP_005775532.1;transl_table=11;translation=length.349
NC_006347	GenBank	exon	16022	17071	.	+	1	Parent=BF_RS03885.t01
NC_006347	GenBank	gene	17075	17476	.	+	1	ID=BF_RS03890;Name=BF_RS03890;old_locus_tag=BF0823
NC_006347	GenBank	mRNA	17075	17476	.	+	1	ID=BF_RS03890.t01;Parent=BF_RS03890
NC_006347	GenBank	CDS	17075	17476	.	+	1	ID=BF_RS03890.p01;Parent=BF_RS03890.t01;Name=BF_RS03890;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005775533.1;old_locus_tag=BF0823;product=VOC family protein;protein_id=WP_005775533.1;transl_table=11;translation=length.133
NC_006347	GenBank	exon	17075	17476	.	+	1	Parent=BF_RS03890.t01
NC_006347	GenBank	gene	17487	19076	.	+	1	ID=BF_RS03895;Name=BF_RS03895;old_locus_tag=BF0824
NC_006347	GenBank	mRNA	17487	19076	.	+	1	ID=BF_RS03895.t01;Parent=BF_RS03895
NC_006347	GenBank	CDS	17487	19076	.	+	1	ID=BF_RS03895.p01;Parent=BF_RS03895.t01;Name=BF_RS03895;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005775534.1;old_locus_tag=BF0824;product=HAD-IIIC family phosphatase;protein_id=WP_011202156.1;transl_table=11;translation=length.529
NC_006347	GenBank	exon	17487	19076	.	+	1	Parent=BF_RS03895.t01
NC_006347	GenBank	gene	19078	19293	.	+	1	ID=BF_RS03900;Name=BF_RS03900;old_locus_tag=BF0825
NC_006347	GenBank	mRNA	19078	19293	.	+	1	ID=BF_RS03900.t01;Parent=BF_RS03900
NC_006347	GenBank	CDS	19078	19293	.	+	1	ID=BF_RS03900.p01;Parent=BF_RS03900.t01;Name=BF_RS03900;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005801360.1;old_locus_tag=BF0825;product=acyl carrier protein;protein_id=WP_005796132.1;transl_table=11;translation=length.71
NC_006347	GenBank	exon	19078	19293	.	+	1	Parent=BF_RS03900.t01
NC_006347	GenBank	gene	19294	19893	.	+	1	ID=BF_RS03905;Name=BF_RS03905;old_locus_tag=BF0826
NC_006347	GenBank	mRNA	19294	19893	.	+	1	ID=BF_RS03905.t01;Parent=BF_RS03905
NC_006347	GenBank	CDS	19294	19893	.	+	1	ID=BF_RS03905.p01;Parent=BF_RS03905.t01;Name=BF_RS03905;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005801359.1;old_locus_tag=BF0826;product=MBL fold metallo-hydrolase;protein_id=WP_005801359.1;transl_table=11;translation=length.199
NC_006347	GenBank	exon	19294	19893	.	+	1	Parent=BF_RS03905.t01
NC_006347	GenBank	gene	19980	21113	.	+	1	ID=BF_RS03910;Name=BF_RS03910;old_locus_tag=BF0827
NC_006347	GenBank	mRNA	19980	21113	.	+	1	ID=BF_RS03910.t01;Parent=BF_RS03910
NC_006347	GenBank	CDS	19980	21113	.	+	1	ID=BF_RS03910.p01;Parent=BF_RS03910.t01;Name=BF_RS03910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005784977.1;old_locus_tag=BF0827;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_011202157.1;transl_table=11;translation=length.377
NC_006347	GenBank	exon	19980	21113	.	+	1	Parent=BF_RS03910.t01