##gff-version 3
##sequence-region NC_006347 1 24914
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	24914	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	1824	.	+	1	ID=BF_RS07190;Name=BF_RS07190;old_locus_tag=BF1530
NC_006347	GenBank	mRNA	1	1824	.	+	1	ID=BF_RS07190.t01;Parent=BF_RS07190
NC_006347	GenBank	CDS	1	1824	.	+	1	ID=BF_RS07190.p01;Parent=BF_RS07190.t01;Name=BF_RS07190;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005810379.1;old_locus_tag=BF1530;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_011202462.1;transl_table=11;translation=length.607
NC_006347	GenBank	exon	1	1824	.	+	1	Parent=BF_RS07190.t01
NC_006347	GenBank	gene	1830	3557	.	+	1	ID=BF_RS07195;Name=BF_RS07195;old_locus_tag=BF1531
NC_006347	GenBank	mRNA	1830	3557	.	+	1	ID=BF_RS07195.t01;Parent=BF_RS07195
NC_006347	GenBank	CDS	1830	3557	.	+	1	ID=BF_RS07195.p01;Parent=BF_RS07195.t01;Name=BF_RS07195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009291950.1;old_locus_tag=BF1531;product=HAD-IIIC family phosphatase;protein_id=WP_009291950.1;transl_table=11;translation=length.575
NC_006347	GenBank	exon	1830	3557	.	+	1	Parent=BF_RS07195.t01
NC_006347	GenBank	gene	3577	3819	.	+	1	ID=BF_RS07200;Name=BF_RS07200;old_locus_tag=BF1532
NC_006347	GenBank	mRNA	3577	3819	.	+	1	ID=BF_RS07200.t01;Parent=BF_RS07200
NC_006347	GenBank	CDS	3577	3819	.	+	1	ID=BF_RS07200.p01;Parent=BF_RS07200.t01;Name=BF_RS07200;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816683.1;old_locus_tag=BF1532;product=acyl carrier protein;protein_id=WP_009291951.1;transl_table=11;translation=length.80
NC_006347	GenBank	exon	3577	3819	.	+	1	Parent=BF_RS07200.t01
NC_006347	GenBank	gene	3865	5352	.	+	1	ID=BF_RS07205;Name=BF_RS07205;old_locus_tag=BF1533
NC_006347	GenBank	mRNA	3865	5352	.	+	1	ID=BF_RS07205.t01;Parent=BF_RS07205
NC_006347	GenBank	CDS	3865	5352	.	+	1	ID=BF_RS07205.p01;Parent=BF_RS07205.t01;Name=BF_RS07205;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009291952.1;old_locus_tag=BF1533;product=hypothetical protein;protein_id=WP_050443750.1;transl_table=11;translation=length.495
NC_006347	GenBank	exon	3865	5352	.	+	1	Parent=BF_RS07205.t01
NC_006347	GenBank	gene	5387	6199	.	+	1	ID=BF_RS07210;Name=rfbF;locus_tag=BF_RS07210;old_locus_tag=BF1534
NC_006347	GenBank	mRNA	5387	6199	.	+	1	ID=BF_RS07210.t01;Parent=BF_RS07210
NC_006347	GenBank	CDS	5387	6199	.	+	1	ID=BF_RS07210.p01;Parent=BF_RS07210.t01;eC_number=2.7.7.33;Name=rfbF;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816687.1;locus_tag=BF_RS07210;old_locus_tag=BF1534;product=glucose-1-phosphate cytidylyltransferase;protein_id=WP_005816687.1;transl_table=11;translation=length.270
NC_006347	GenBank	exon	5387	6199	.	+	1	Parent=BF_RS07210.t01
NC_006347	GenBank	gene	6138	6593	.	+	1	ID=BF_RS07215;Name=BF_RS07215;old_locus_tag=BF1535
NC_006347	GenBank	mRNA	6138	6593	.	+	1	ID=BF_RS07215.t01;Parent=BF_RS07215
NC_006347	GenBank	CDS	6138	6593	.	+	1	ID=BF_RS07215.p01;Parent=BF_RS07215.t01;Name=BF_RS07215;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816689.1;old_locus_tag=BF1535;product=cupin domain-containing protein;protein_id=WP_005816689.1;transl_table=11;translation=length.151
NC_006347	GenBank	exon	6138	6593	.	+	1	Parent=BF_RS07215.t01
NC_006347	GenBank	gene	6590	7678	.	+	1	ID=BF_RS07220;Name=rfbG;locus_tag=BF_RS07220;old_locus_tag=BF1536
NC_006347	GenBank	mRNA	6590	7678	.	+	1	ID=BF_RS07220.t01;Parent=BF_RS07220
NC_006347	GenBank	CDS	6590	7678	.	+	1	ID=BF_RS07220.p01;Parent=BF_RS07220.t01;eC_number=4.2.1.45;Name=rfbG;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202465.1;locus_tag=BF_RS07220;old_locus_tag=BF1536;product=CDP-glucose 4%2C6-dehydratase;protein_id=WP_011202465.1;transl_table=11;translation=length.362
NC_006347	GenBank	exon	6590	7678	.	+	1	Parent=BF_RS07220.t01
NC_006347	GenBank	gene	7678	8568	.	+	1	ID=BF_RS07225;Name=BF_RS07225;old_locus_tag=BF1537
NC_006347	GenBank	mRNA	7678	8568	.	+	1	ID=BF_RS07225.t01;Parent=BF_RS07225
NC_006347	GenBank	CDS	7678	8568	.	+	1	ID=BF_RS07225.p01;Parent=BF_RS07225.t01;Name=BF_RS07225;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202466.1;old_locus_tag=BF1537;product=NAD(P)-dependent oxidoreductase;protein_id=WP_011202466.1;transl_table=11;translation=length.296
NC_006347	GenBank	exon	7678	8568	.	+	1	Parent=BF_RS07225.t01
NC_006347	GenBank	gene	8582	9769	.	+	1	ID=BF_RS07230;Name=BF_RS07230;old_locus_tag=BF1538
NC_006347	GenBank	mRNA	8582	9769	.	+	1	ID=BF_RS07230.t01;Parent=BF_RS07230
NC_006347	GenBank	CDS	8582	9769	.	+	1	ID=BF_RS07230.p01;Parent=BF_RS07230.t01;Name=BF_RS07230;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816696.1;old_locus_tag=BF1538;product=glycosyltransferase family 61 protein;protein_id=WP_005816696.1;transl_table=11;translation=length.395
NC_006347	GenBank	exon	8582	9769	.	+	1	Parent=BF_RS07230.t01
NC_006347	GenBank	gene	9776	10672	.	+	1	ID=BF_RS07235;Name=BF_RS07235;old_locus_tag=BF1539
NC_006347	GenBank	mRNA	9776	10672	.	+	1	ID=BF_RS07235.t01;Parent=BF_RS07235
NC_006347	GenBank	CDS	9776	10672	.	+	1	ID=BF_RS07235.p01;Parent=BF_RS07235.t01;Name=BF_RS07235;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816698.1;old_locus_tag=BF1539;product=aldo/keto reductase;protein_id=WP_005816698.1;transl_table=11;translation=length.298
NC_006347	GenBank	exon	9776	10672	.	+	1	Parent=BF_RS07235.t01
NC_006347	GenBank	gene	10669	11568	.	+	1	ID=BF_RS07240;Name=BF_RS07240;old_locus_tag=BF1540
NC_006347	GenBank	mRNA	10669	11568	.	+	1	ID=BF_RS07240.t01;Parent=BF_RS07240
NC_006347	GenBank	CDS	10669	11568	.	+	1	ID=BF_RS07240.p01;Parent=BF_RS07240.t01;Name=BF_RS07240;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816700.1;old_locus_tag=BF1540;product=hypothetical protein;protein_id=WP_005816700.1;transl_table=11;translation=length.299
NC_006347	GenBank	exon	10669	11568	.	+	1	Parent=BF_RS07240.t01
NC_006347	GenBank	gene	11565	12782	.	+	1	ID=BF_RS07245;Name=BF_RS07245;old_locus_tag=BF1541
NC_006347	GenBank	mRNA	11565	12782	.	+	1	ID=BF_RS07245.t01;Parent=BF_RS07245
NC_006347	GenBank	CDS	11565	12782	.	+	1	ID=BF_RS07245.p01;Parent=BF_RS07245.t01;Name=BF_RS07245;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009291955.1;old_locus_tag=BF1541;product=acyltransferase family protein;protein_id=WP_011202468.1;transl_table=11;translation=length.405
NC_006347	GenBank	exon	11565	12782	.	+	1	Parent=BF_RS07245.t01
NC_006347	GenBank	gene	12885	14030	.	+	1	ID=BF_RS07250;Name=BF_RS07250;old_locus_tag=BF1542
NC_006347	GenBank	mRNA	12885	14030	.	+	1	ID=BF_RS07250.t01;Parent=BF_RS07250
NC_006347	GenBank	CDS	12885	14030	.	+	1	ID=BF_RS07250.p01;Parent=BF_RS07250.t01;Name=BF_RS07250;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816705.1;old_locus_tag=BF1542;product=polysaccharide pyruvyl transferase family protein;protein_id=WP_011202469.1;transl_table=11;translation=length.381
NC_006347	GenBank	exon	12885	14030	.	+	1	Parent=BF_RS07250.t01
NC_006347	GenBank	gene	14014	15015	.	+	1	ID=BF_RS07255;Name=BF_RS07255;old_locus_tag=BF1543
NC_006347	GenBank	mRNA	14014	15015	.	+	1	ID=BF_RS07255.t01;Parent=BF_RS07255
NC_006347	GenBank	CDS	14014	15015	.	+	1	ID=BF_RS07255.p01;Parent=BF_RS07255.t01;Name=BF_RS07255;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816707.1;old_locus_tag=BF1543;product=glycosyltransferase family 2 protein;protein_id=WP_005816707.1;transl_table=11;translation=length.333
NC_006347	GenBank	exon	14014	15015	.	+	1	Parent=BF_RS07255.t01
NC_006347	GenBank	gene	15457	16419	.	+	1	ID=BF_RS07260;Name=BF_RS07260;old_locus_tag=BF1544
NC_006347	GenBank	mRNA	15457	16419	.	+	1	ID=BF_RS07260.t01;Parent=BF_RS07260
NC_006347	GenBank	CDS	15457	16419	.	+	1	ID=BF_RS07260.p01;Parent=BF_RS07260.t01;Name=BF_RS07260;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816709.1;old_locus_tag=BF1544;product=hypothetical protein;protein_id=WP_005816709.1;transl_table=11;translation=length.320
NC_006347	GenBank	exon	15457	16419	.	+	1	Parent=BF_RS07260.t01
NC_006347	GenBank	gene	17243	18502	.	+	1	ID=BF_RS07265;Name=BF_RS07265;old_locus_tag=BF1545
NC_006347	GenBank	mRNA	17243	18502	.	+	1	ID=BF_RS07265.t01;Parent=BF_RS07265
NC_006347	GenBank	CDS	17243	18502	.	+	1	ID=BF_RS07265.p01;Parent=BF_RS07265.t01;Name=BF_RS07265;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009291956.1;old_locus_tag=BF1545;product=polymerase;protein_id=WP_005816711.1;transl_table=11;translation=length.419
NC_006347	GenBank	exon	17243	18502	.	+	1	Parent=BF_RS07265.t01
NC_006347	GenBank	gene	18444	19256	.	+	1	ID=BF_RS07270;Name=BF_RS07270;old_locus_tag=BF1546
NC_006347	GenBank	mRNA	18444	19256	.	+	1	ID=BF_RS07270.t01;Parent=BF_RS07270
NC_006347	GenBank	CDS	18444	19256	.	+	1	ID=BF_RS07270.p01;Parent=BF_RS07270.t01;Name=BF_RS07270;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816713.1;old_locus_tag=BF1546;product=glycosyltransferase;protein_id=WP_011202470.1;transl_table=11;translation=length.270
NC_006347	GenBank	exon	18444	19256	.	+	1	Parent=BF_RS07270.t01
NC_006347	GenBank	gene	19261	20358	.	+	1	ID=BF_RS07275;Name=BF_RS07275;old_locus_tag=BF1547
NC_006347	GenBank	mRNA	19261	20358	.	+	1	ID=BF_RS07275.t01;Parent=BF_RS07275
NC_006347	GenBank	CDS	19261	20358	.	+	1	ID=BF_RS07275.p01;Parent=BF_RS07275.t01;Name=BF_RS07275;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202471.1;old_locus_tag=BF1547;product=glycosyltransferase;protein_id=WP_011202471.1;transl_table=11;translation=length.365
NC_006347	GenBank	exon	19261	20358	.	+	1	Parent=BF_RS07275.t01
NC_006347	GenBank	gene	20405	21439	.	+	1	ID=BF_RS07280;Name=BF_RS07280;old_locus_tag=BF1548
NC_006347	GenBank	mRNA	20405	21439	.	+	1	ID=BF_RS07280.t01;Parent=BF_RS07280
NC_006347	GenBank	CDS	20405	21439	.	+	1	ID=BF_RS07280.p01;Parent=BF_RS07280.t01;Name=BF_RS07280;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005776329.1;old_locus_tag=BF1548;product=glycosyltransferase;protein_id=WP_011202472.1;transl_table=11;translation=length.344
NC_006347	GenBank	exon	20405	21439	.	+	1	Parent=BF_RS07280.t01
NC_006347	GenBank	gene	21444	22934	.	+	1	ID=BF_RS07285;Name=BF_RS07285;old_locus_tag=BF1549
NC_006347	GenBank	mRNA	21444	22934	.	+	1	ID=BF_RS07285.t01;Parent=BF_RS07285
NC_006347	GenBank	CDS	21444	22934	.	+	1	ID=BF_RS07285.p01;Parent=BF_RS07285.t01;Name=BF_RS07285;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202473.1;old_locus_tag=BF1549;product=hypothetical protein;protein_id=WP_011202473.1;transl_table=11;translation=length.496
NC_006347	GenBank	exon	21444	22934	.	+	1	Parent=BF_RS07285.t01
NC_006347	GenBank	gene	22952	23848	.	+	1	ID=BF_RS07290;Name=BF_RS07290;old_locus_tag=BF1550
NC_006347	GenBank	mRNA	22952	23848	.	+	1	ID=BF_RS07290.t01;Parent=BF_RS07290
NC_006347	GenBank	CDS	22952	23848	.	+	1	ID=BF_RS07290.p01;Parent=BF_RS07290.t01;Name=BF_RS07290;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202474.1;old_locus_tag=BF1550;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_011202474.1;transl_table=11;translation=length.298
NC_006347	GenBank	exon	22952	23848	.	+	1	Parent=BF_RS07290.t01
NC_006347	GenBank	gene	23967	24914	.	+	1	ID=BF_RS07295;Name=BF_RS07295;old_locus_tag=BF1551
NC_006347	GenBank	mRNA	23967	24914	.	+	1	ID=BF_RS07295.t01;Parent=BF_RS07295
NC_006347	GenBank	CDS	23967	24914	.	+	1	ID=BF_RS07295.p01;Parent=BF_RS07295.t01;Name=BF_RS07295;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005819212.1;old_locus_tag=BF1551;product=glycosyltransferase family 4 protein;protein_id=WP_005816723.1;transl_table=11;translation=length.315
NC_006347	GenBank	exon	23967	24914	.	+	1	Parent=BF_RS07295.t01