##gff-version 3
##sequence-region NC_006347 1 20373
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	20373	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	954	.	-	1	ID=BF_RS12180;Name=BF_RS12180;old_locus_tag=BF2566
NC_006347	GenBank	mRNA	1	954	.	-	1	ID=BF_RS12180.t01;Parent=BF_RS12180
NC_006347	GenBank	CDS	1	954	.	-	1	ID=BF_RS12180.p01;Parent=BF_RS12180.t01;Name=BF_RS12180;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005793469.1;old_locus_tag=BF2566;product=glycosyltransferase family 4 protein;protein_id=WP_011202921.1;transl_table=11;translation=length.317
NC_006347	GenBank	exon	1	954	.	-	1	Parent=BF_RS12180.t01
NC_006347	GenBank	gene	1072	1968	.	-	1	ID=BF_RS12185;Name=BF_RS12185;old_locus_tag=BF2567
NC_006347	GenBank	mRNA	1072	1968	.	-	1	ID=BF_RS12185.t01;Parent=BF_RS12185
NC_006347	GenBank	CDS	1072	1968	.	-	1	ID=BF_RS12185.p01;Parent=BF_RS12185.t01;Name=BF_RS12185;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202922.1;old_locus_tag=BF2567;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_011202922.1;transl_table=11;translation=length.298
NC_006347	GenBank	exon	1072	1968	.	-	1	Parent=BF_RS12185.t01
NC_006347	GenBank	gene	1975	3174	.	-	1	ID=BF_RS12190;Name=BF_RS12190;old_locus_tag=BF2568
NC_006347	GenBank	mRNA	1975	3174	.	-	1	ID=BF_RS12190.t01;Parent=BF_RS12190
NC_006347	GenBank	CDS	1975	3174	.	-	1	ID=BF_RS12190.p01;Parent=BF_RS12190.t01;Name=BF_RS12190;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202923.1;old_locus_tag=BF2568;product=glycosyltransferase family 4 protein;protein_id=WP_011202923.1;transl_table=11;translation=length.399
NC_006347	GenBank	exon	1975	3174	.	-	1	Parent=BF_RS12190.t01
NC_006347	GenBank	gene	3186	4043	.	-	1	ID=BF_RS12195;Name=BF_RS12195;old_locus_tag=BF2569
NC_006347	GenBank	mRNA	3186	4043	.	-	1	ID=BF_RS12195.t01;Parent=BF_RS12195
NC_006347	GenBank	CDS	3186	4043	.	-	1	ID=BF_RS12195.p01;Parent=BF_RS12195.t01;Name=BF_RS12195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009135170.1;old_locus_tag=BF2569;product=SDR family oxidoreductase;protein_id=WP_011202924.1;transl_table=11;translation=length.285
NC_006347	GenBank	exon	3186	4043	.	-	1	Parent=BF_RS12195.t01
NC_006347	GenBank	gene	4064	5194	.	-	1	ID=BF_RS12200;Name=wecB;locus_tag=BF_RS12200;old_locus_tag=BF2569.1
NC_006347	GenBank	mRNA	4064	5194	.	-	1	ID=BF_RS12200.t01;Parent=BF_RS12200
NC_006347	GenBank	CDS	4064	5194	.	-	1	ID=BF_RS12200.p01;Parent=BF_RS12200.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005786857.1;locus_tag=BF_RS12200;old_locus_tag=BF2569.1;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_005817161.1;transl_table=11;translation=length.376
NC_006347	GenBank	exon	4064	5194	.	-	1	Parent=BF_RS12200.t01
NC_006347	GenBank	gene	5182	6204	.	-	1	ID=BF_RS12205;Name=BF_RS12205;old_locus_tag=BF2570
NC_006347	GenBank	mRNA	5182	6204	.	-	1	ID=BF_RS12205.t01;Parent=BF_RS12205
NC_006347	GenBank	CDS	5182	6204	.	-	1	ID=BF_RS12205.p01;Parent=BF_RS12205.t01;Name=BF_RS12205;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005778130.1;old_locus_tag=BF2570;product=polysaccharide biosynthesis protein;protein_id=WP_011202925.1;transl_table=11;translation=length.340
NC_006347	GenBank	exon	5182	6204	.	-	1	Parent=BF_RS12205.t01
NC_006347	GenBank	gene	6174	7178	.	-	1	ID=BF_RS12210;Name=BF_RS12210;old_locus_tag=BF2571
NC_006347	GenBank	mRNA	6174	7178	.	-	1	ID=BF_RS12210.t01;Parent=BF_RS12210
NC_006347	GenBank	CDS	6174	7178	.	-	1	ID=BF_RS12210.p01;Parent=BF_RS12210.t01;Name=BF_RS12210;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005778132.1;old_locus_tag=BF2571;product=glycosyltransferase;protein_id=WP_011202926.1;transl_table=11;translation=length.334
NC_006347	GenBank	exon	6174	7178	.	-	1	Parent=BF_RS12210.t01
NC_006347	GenBank	gene	7190	8245	.	-	1	ID=BF_RS12215;Name=BF_RS12215;old_locus_tag=BF2572
NC_006347	GenBank	mRNA	7190	8245	.	-	1	ID=BF_RS12215.t01;Parent=BF_RS12215
NC_006347	GenBank	CDS	7190	8245	.	-	1	ID=BF_RS12215.p01;Parent=BF_RS12215.t01;Name=BF_RS12215;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF025025.1;old_locus_tag=BF2572;product=glycosyltransferase family 2 protein;protein_id=WP_011202927.1;transl_table=11;translation=length.351
NC_006347	GenBank	exon	7190	8245	.	-	1	Parent=BF_RS12215.t01
NC_006347	GenBank	gene	8264	9079	.	-	1	ID=BF_RS12220;Name=BF_RS12220;old_locus_tag=BF2573
NC_006347	GenBank	mRNA	8264	9079	.	-	1	ID=BF_RS12220.t01;Parent=BF_RS12220
NC_006347	GenBank	CDS	8264	9079	.	-	1	ID=BF_RS12220.p01;Parent=BF_RS12220.t01;Name=BF_RS12220;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202928.1;old_locus_tag=BF2573;product=alpha-1%2C2-fucosyltransferase;protein_id=WP_011202928.1;transl_table=11;translation=length.271
NC_006347	GenBank	exon	8264	9079	.	-	1	Parent=BF_RS12220.t01
NC_006347	GenBank	gene	9045	10367	.	-	1	ID=BF_RS12225;Name=BF_RS12225;old_locus_tag=BF2574
NC_006347	GenBank	mRNA	9045	10367	.	-	1	ID=BF_RS12225.t01;Parent=BF_RS12225
NC_006347	GenBank	CDS	9045	10367	.	-	1	ID=BF_RS12225.p01;Parent=BF_RS12225.t01;Name=BF_RS12225;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202929.1;old_locus_tag=BF2574;product=hypothetical protein;protein_id=WP_011202929.1;transl_table=11;translation=length.440
NC_006347	GenBank	exon	9045	10367	.	-	1	Parent=BF_RS12225.t01
NC_006347	GenBank	gene	10381	11289	.	-	1	ID=BF_RS12230;Name=BF_RS12230;old_locus_tag=BF2575
NC_006347	GenBank	mRNA	10381	11289	.	-	1	ID=BF_RS12230.t01;Parent=BF_RS12230
NC_006347	GenBank	CDS	10381	11289	.	-	1	ID=BF_RS12230.p01;Parent=BF_RS12230.t01;Name=BF_RS12230;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005778165.1;old_locus_tag=BF2575;product=glycosyltransferase;protein_id=WP_011202930.1;transl_table=11;translation=length.302
NC_006347	GenBank	exon	10381	11289	.	-	1	Parent=BF_RS12230.t01
NC_006347	GenBank	gene	11279	12415	.	-	1	ID=BF_RS12235;Name=BF_RS12235;old_locus_tag=BF2576
NC_006347	GenBank	mRNA	11279	12415	.	-	1	ID=BF_RS12235.t01;Parent=BF_RS12235
NC_006347	GenBank	CDS	11279	12415	.	-	1	ID=BF_RS12235.p01;Parent=BF_RS12235.t01;Name=BF_RS12235;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016273691.1;old_locus_tag=BF2576;product=phosphonoacetaldehyde reductase;protein_id=WP_011202931.1;transl_table=11;translation=length.378
NC_006347	GenBank	exon	11279	12415	.	-	1	Parent=BF_RS12235.t01
NC_006347	GenBank	gene	12423	13544	.	-	1	ID=BF_RS12240;Name=aepY;locus_tag=BF_RS12240;old_locus_tag=BF2577
NC_006347	GenBank	mRNA	12423	13544	.	-	1	ID=BF_RS12240.t01;Parent=BF_RS12240
NC_006347	GenBank	CDS	12423	13544	.	-	1	ID=BF_RS12240.p01;Parent=BF_RS12240.t01;eC_number=4.1.1.82;Name=aepY;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014545730.1;locus_tag=BF_RS12240;old_locus_tag=BF2577;product=phosphonopyruvate decarboxylase;protein_id=WP_011202932.1;transl_table=11;translation=length.373
NC_006347	GenBank	exon	12423	13544	.	-	1	Parent=BF_RS12240.t01
NC_006347	GenBank	gene	13552	14859	.	-	1	ID=BF_RS12245;Name=aepX;locus_tag=BF_RS12245;old_locus_tag=BF2578
NC_006347	GenBank	mRNA	13552	14859	.	-	1	ID=BF_RS12245.t01;Parent=BF_RS12245
NC_006347	GenBank	CDS	13552	14859	.	-	1	ID=BF_RS12245.p01;Parent=BF_RS12245.t01;eC_number=5.4.2.9;Name=aepX;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007843288.1;locus_tag=BF_RS12245;old_locus_tag=BF2578;product=phosphoenolpyruvate mutase;protein_id=WP_011202933.1;transl_table=11;translation=length.435
NC_006347	GenBank	exon	13552	14859	.	-	1	Parent=BF_RS12245.t01
NC_006347	GenBank	gene	14866	15642	.	-	1	ID=BF_RS12250;Name=BF_RS12250;old_locus_tag=BF2579
NC_006347	GenBank	mRNA	14866	15642	.	-	1	ID=BF_RS12250.t01;Parent=BF_RS12250
NC_006347	GenBank	CDS	14866	15642	.	-	1	ID=BF_RS12250.p01;Parent=BF_RS12250.t01;Name=BF_RS12250;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF016852.1;old_locus_tag=BF2579;product=cholinephosphotransferase;protein_id=WP_011202934.1;transl_table=11;translation=length.258
NC_006347	GenBank	exon	14866	15642	.	-	1	Parent=BF_RS12250.t01
NC_006347	GenBank	gene	15650	16921	.	-	1	ID=BF_RS12255;Name=BF_RS12255;old_locus_tag=BF2580
NC_006347	GenBank	mRNA	15650	16921	.	-	1	ID=BF_RS12255.t01;Parent=BF_RS12255
NC_006347	GenBank	CDS	15650	16921	.	-	1	ID=BF_RS12255.p01;Parent=BF_RS12255.t01;Name=BF_RS12255;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF014686.1;old_locus_tag=BF2580;product=ATP-grasp domain-containing protein;protein_id=WP_011202935.1;transl_table=11;translation=length.423
NC_006347	GenBank	exon	15650	16921	.	-	1	Parent=BF_RS12255.t01
NC_006347	GenBank	gene	16925	18034	.	-	1	ID=BF_RS12260;Name=BF_RS12260;old_locus_tag=BF2581
NC_006347	GenBank	mRNA	16925	18034	.	-	1	ID=BF_RS12260.t01;Parent=BF_RS12260
NC_006347	GenBank	CDS	16925	18034	.	-	1	ID=BF_RS12260.p01;Parent=BF_RS12260.t01;Name=BF_RS12260;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009125530.1;old_locus_tag=BF2581;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_011202936.1;transl_table=11;translation=length.369
NC_006347	GenBank	exon	16925	18034	.	-	1	Parent=BF_RS12260.t01
NC_006347	GenBank	gene	18047	19492	.	-	1	ID=BF_RS12265;Name=BF_RS12265;old_locus_tag=BF2582
NC_006347	GenBank	mRNA	18047	19492	.	-	1	ID=BF_RS12265.t01;Parent=BF_RS12265
NC_006347	GenBank	CDS	18047	19492	.	-	1	ID=BF_RS12265.p01;Parent=BF_RS12265.t01;Name=BF_RS12265;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202937.1;old_locus_tag=BF2582;product=lipopolysaccharide biosynthesis protein;protein_id=WP_011202937.1;transl_table=11;translation=length.481
NC_006347	GenBank	exon	18047	19492	.	-	1	Parent=BF_RS12265.t01
NC_006347	GenBank	gene	19489	20373	.	-	1	ID=BF_RS12270;Name=rfbA;locus_tag=BF_RS12270;old_locus_tag=BF2583
NC_006347	GenBank	mRNA	19489	20373	.	-	1	ID=BF_RS12270.t01;Parent=BF_RS12270
NC_006347	GenBank	CDS	19489	20373	.	-	1	ID=BF_RS12270.p01;Parent=BF_RS12270.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005821582.1;locus_tag=BF_RS12270;old_locus_tag=BF2583;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_011202938.1;transl_table=11;translation=length.294
NC_006347	GenBank	exon	19489	20373	.	-	1	Parent=BF_RS12270.t01