##gff-version 3
##sequence-region NC_006347 1 14280
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	14280	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	588	.	-	1	ID=BF_RS18570;Name=BF_RS18570;old_locus_tag=BF3911
NC_006347	GenBank	mRNA	1	588	.	-	1	ID=BF_RS18570.t01;Parent=BF_RS18570
NC_006347	GenBank	CDS	1	588	.	-	1	ID=BF_RS18570.p01;Parent=BF_RS18570.t01;Name=BF_RS18570;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203508.1;old_locus_tag=BF3911;product=sugar transferase;protein_id=WP_011203508.1;transl_table=11;translation=length.195
NC_006347	GenBank	exon	1	588	.	-	1	Parent=BF_RS18570.t01
NC_006347	GenBank	gene	620	1843	.	-	1	ID=BF_RS18575;Name=BF_RS18575;old_locus_tag=BF3912
NC_006347	GenBank	mRNA	620	1843	.	-	1	ID=BF_RS18575.t01;Parent=BF_RS18575
NC_006347	GenBank	CDS	620	1843	.	-	1	ID=BF_RS18575.p01;Parent=BF_RS18575.t01;Name=BF_RS18575;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005786175.1;old_locus_tag=BF3912;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_011203509.1;transl_table=11;translation=length.407
NC_006347	GenBank	exon	620	1843	.	-	1	Parent=BF_RS18575.t01
NC_006347	GenBank	gene	1851	2456	.	-	1	ID=BF_RS18580;Name=BF_RS18580;old_locus_tag=BF3913
NC_006347	GenBank	mRNA	1851	2456	.	-	1	ID=BF_RS18580.t01;Parent=BF_RS18580
NC_006347	GenBank	CDS	1851	2456	.	-	1	ID=BF_RS18580.p01;Parent=BF_RS18580.t01;Name=BF_RS18580;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005816580.1;old_locus_tag=BF3913;product=GNAT family N-acetyltransferase;protein_id=WP_011203510.1;transl_table=11;translation=length.201
NC_006347	GenBank	exon	1851	2456	.	-	1	Parent=BF_RS18580.t01
NC_006347	GenBank	gene	2444	3658	.	-	1	ID=BF_RS18585;Name=BF_RS18585;old_locus_tag=BF3914
NC_006347	GenBank	mRNA	2444	3658	.	-	1	ID=BF_RS18585.t01;Parent=BF_RS18585
NC_006347	GenBank	CDS	2444	3658	.	-	1	ID=BF_RS18585.p01;Parent=BF_RS18585.t01;Name=BF_RS18585;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004569940.1;old_locus_tag=BF3914;product=glycosyltransferase family 4 protein;protein_id=WP_011203511.1;transl_table=11;translation=length.404
NC_006347	GenBank	exon	2444	3658	.	-	1	Parent=BF_RS18585.t01
NC_006347	GenBank	gene	3665	4879	.	-	1	ID=BF_RS18590;Name=BF_RS18590;old_locus_tag=BF3915
NC_006347	GenBank	mRNA	3665	4879	.	-	1	ID=BF_RS18590.t01;Parent=BF_RS18590
NC_006347	GenBank	CDS	3665	4879	.	-	1	ID=BF_RS18590.p01;Parent=BF_RS18590.t01;Name=BF_RS18590;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005781529.1;old_locus_tag=BF3915;product=glycosyltransferase;protein_id=WP_032588990.1;transl_table=11;translation=length.404
NC_006347	GenBank	exon	3665	4879	.	-	1	Parent=BF_RS18590.t01
NC_006347	GenBank	gene	4912	5862	.	-	1	ID=BF_RS18595;Name=BF_RS18595;old_locus_tag=BF3916
NC_006347	GenBank	mRNA	4912	5862	.	-	1	ID=BF_RS18595.t01;Parent=BF_RS18595
NC_006347	GenBank	CDS	4912	5862	.	-	1	ID=BF_RS18595.p01;Parent=BF_RS18595.t01;Name=BF_RS18595;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BF3916;product=hypothetical protein;protein_id=WP_011203513.1;transl_table=11;translation=length.316
NC_006347	GenBank	exon	4912	5862	.	-	1	Parent=BF_RS18595.t01
NC_006347	GenBank	gene	5876	6940	.	-	1	ID=BF_RS18600;Name=BF_RS18600;old_locus_tag=BF3917
NC_006347	GenBank	mRNA	5876	6940	.	-	1	ID=BF_RS18600.t01;Parent=BF_RS18600
NC_006347	GenBank	CDS	5876	6940	.	-	1	ID=BF_RS18600.p01;Parent=BF_RS18600.t01;Name=BF_RS18600;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012744.1%2CHMM:NF024831.1;old_locus_tag=BF3917;product=glycosyltransferase;protein_id=WP_011203514.1;transl_table=11;translation=length.354
NC_006347	GenBank	exon	5876	6940	.	-	1	Parent=BF_RS18600.t01
NC_006347	GenBank	gene	6864	8264	.	-	1	ID=BF_RS18605;Name=BF_RS18605;old_locus_tag=BF3918
NC_006347	GenBank	mRNA	6864	8264	.	-	1	ID=BF_RS18605.t01;Parent=BF_RS18605
NC_006347	GenBank	CDS	6864	8264	.	-	1	ID=BF_RS18605.p01;Parent=BF_RS18605.t01;Name=BF_RS18605;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF025654.1;old_locus_tag=BF3918;product=oligosaccharide repeat unit polymerase;protein_id=WP_011203515.1;transl_table=11;translation=length.466
NC_006347	GenBank	exon	6864	8264	.	-	1	Parent=BF_RS18605.t01
NC_006347	GenBank	gene	8296	9315	.	-	1	ID=BF_RS18610;Name=BF_RS18610;old_locus_tag=BF3919
NC_006347	GenBank	mRNA	8296	9315	.	-	1	ID=BF_RS18610.t01;Parent=BF_RS18610
NC_006347	GenBank	CDS	8296	9315	.	-	1	ID=BF_RS18610.p01;Parent=BF_RS18610.t01;Name=BF_RS18610;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012745.1;old_locus_tag=BF3919;product=glycosyltransferase;protein_id=WP_011203516.1;transl_table=11;translation=length.339
NC_006347	GenBank	exon	8296	9315	.	-	1	Parent=BF_RS18610.t01
NC_006347	GenBank	gene	9321	10634	.	-	1	ID=BF_RS18615;Name=BF_RS18615;old_locus_tag=BF3920
NC_006347	GenBank	mRNA	9321	10634	.	-	1	ID=BF_RS18615.t01;Parent=BF_RS18615
NC_006347	GenBank	CDS	9321	10634	.	-	1	ID=BF_RS18615.p01;Parent=BF_RS18615.t01;Name=BF_RS18615;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002561433.1;old_locus_tag=BF3920;product=UDP-glucose/GDP-mannose dehydrogenase family protein;protein_id=WP_011203517.1;transl_table=11;translation=length.437
NC_006347	GenBank	exon	9321	10634	.	-	1	Parent=BF_RS18615.t01
NC_006347	GenBank	gene	10649	11701	.	-	1	ID=BF_RS18620;Name=BF_RS18620;old_locus_tag=BF3921
NC_006347	GenBank	mRNA	10649	11701	.	-	1	ID=BF_RS18620.t01;Parent=BF_RS18620
NC_006347	GenBank	CDS	10649	11701	.	-	1	ID=BF_RS18620.p01;Parent=BF_RS18620.t01;Name=BF_RS18620;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923251.1;old_locus_tag=BF3921;product=NAD-dependent epimerase;protein_id=WP_011203518.1;transl_table=11;translation=length.350
NC_006347	GenBank	exon	10649	11701	.	-	1	Parent=BF_RS18620.t01
NC_006347	GenBank	gene	11706	12863	.	-	1	ID=BF_RS18625;Name=BF_RS18625;old_locus_tag=BF3922
NC_006347	GenBank	mRNA	11706	12863	.	-	1	ID=BF_RS18625.t01;Parent=BF_RS18625
NC_006347	GenBank	CDS	11706	12863	.	-	1	ID=BF_RS18625.p01;Parent=BF_RS18625.t01;Name=BF_RS18625;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012744.1;old_locus_tag=BF3922;product=glycosyltransferase;protein_id=WP_011203519.1;transl_table=11;translation=length.385
NC_006347	GenBank	exon	11706	12863	.	-	1	Parent=BF_RS18625.t01
NC_006347	GenBank	gene	12856	14280	.	-	1	ID=BF_RS18630;Name=BF_RS18630;old_locus_tag=BF3923
NC_006347	GenBank	mRNA	12856	14280	.	-	1	ID=BF_RS18630.t01;Parent=BF_RS18630
NC_006347	GenBank	CDS	12856	14280	.	-	1	ID=BF_RS18630.p01;Parent=BF_RS18630.t01;Name=BF_RS18630;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF024832.1%2CHMM:NF026018.1;old_locus_tag=BF3923;product=lipopolysaccharide biosynthesis protein;protein_id=WP_011203520.1;transl_table=11;translation=length.474
NC_006347	GenBank	exon	12856	14280	.	-	1	Parent=BF_RS18630.t01