##gff-version 3
##sequence-region NC_006347 1 20243
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	20243	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	885	.	+	1	ID=BF_RS05145;Name=rfbA;locus_tag=BF_RS05145;old_locus_tag=BF1094
NC_006347	GenBank	mRNA	1	885	.	+	1	ID=BF_RS05145.t01;Parent=BF_RS05145
NC_006347	GenBank	CDS	1	885	.	+	1	ID=BF_RS05145.p01;Parent=BF_RS05145.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795876.1;locus_tag=BF_RS05145;old_locus_tag=BF1094;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_005795876.1;transl_table=11;translation=length.294
NC_006347	GenBank	exon	1	885	.	+	1	Parent=BF_RS05145.t01
NC_006347	GenBank	gene	1203	2732	.	+	1	ID=BF_RS05150;Name=BF_RS05150;old_locus_tag=BF1095
NC_006347	GenBank	mRNA	1203	2732	.	+	1	ID=BF_RS05150.t01;Parent=BF_RS05150
NC_006347	GenBank	CDS	1203	2732	.	+	1	ID=BF_RS05150.p01;Parent=BF_RS05150.t01;Name=BF_RS05150;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202254.1;old_locus_tag=BF1095;product=hypothetical protein;protein_id=WP_011202254.1;transl_table=11;translation=length.509
NC_006347	GenBank	exon	1203	2732	.	+	1	Parent=BF_RS05150.t01
NC_006347	GenBank	gene	2729	3838	.	+	1	ID=BF_RS05155;Name=BF_RS05155;old_locus_tag=BF1096
NC_006347	GenBank	mRNA	2729	3838	.	+	1	ID=BF_RS05155.t01;Parent=BF_RS05155
NC_006347	GenBank	CDS	2729	3838	.	+	1	ID=BF_RS05155.p01;Parent=BF_RS05155.t01;Name=BF_RS05155;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202255.1;old_locus_tag=BF1096;product=glycosyltransferase family 1 protein;protein_id=WP_011202255.1;transl_table=11;translation=length.369
NC_006347	GenBank	exon	2729	3838	.	+	1	Parent=BF_RS05155.t01
NC_006347	GenBank	gene	3877	4824	.	+	1	ID=BF_RS05160;Name=BF_RS05160;old_locus_tag=BF1097
NC_006347	GenBank	mRNA	3877	4824	.	+	1	ID=BF_RS05160.t01;Parent=BF_RS05160
NC_006347	GenBank	CDS	3877	4824	.	+	1	ID=BF_RS05160.p01;Parent=BF_RS05160.t01;Name=BF_RS05160;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795870.1;old_locus_tag=BF1097;product=glycosyl transferase;protein_id=WP_005795870.1;transl_table=11;translation=length.315
NC_006347	GenBank	exon	3877	4824	.	+	1	Parent=BF_RS05160.t01
NC_006347	GenBank	gene	4821	6257	.	+	1	ID=BF_RS05165;Name=BF_RS05165;old_locus_tag=BF1098
NC_006347	GenBank	mRNA	4821	6257	.	+	1	ID=BF_RS05165.t01;Parent=BF_RS05165
NC_006347	GenBank	CDS	4821	6257	.	+	1	ID=BF_RS05165.p01;Parent=BF_RS05165.t01;Name=BF_RS05165;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202256.1;old_locus_tag=BF1098;product=O-antigen polysaccharide polymerase Wzy;protein_id=WP_011202256.1;transl_table=11;translation=length.478
NC_006347	GenBank	exon	4821	6257	.	+	1	Parent=BF_RS05165.t01
NC_006347	GenBank	gene	6333	7559	.	+	1	ID=BF_RS05170;Name=wecC;locus_tag=BF_RS05170;old_locus_tag=BF1099
NC_006347	GenBank	mRNA	6333	7559	.	+	1	ID=BF_RS05170.t01;Parent=BF_RS05170
NC_006347	GenBank	CDS	6333	7559	.	+	1	ID=BF_RS05170.p01;Parent=BF_RS05170.t01;eC_number=1.1.1.336;Name=wecC;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795861.1;locus_tag=BF_RS05170;old_locus_tag=BF1099;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_011202257.1;transl_table=11;translation=length.408
NC_006347	GenBank	exon	6333	7559	.	+	1	Parent=BF_RS05170.t01
NC_006347	GenBank	gene	7556	8710	.	+	1	ID=BF_RS05175;Name=wecB;locus_tag=BF_RS05175;old_locus_tag=BF1100
NC_006347	GenBank	mRNA	7556	8710	.	+	1	ID=BF_RS05175.t01;Parent=BF_RS05175
NC_006347	GenBank	CDS	7556	8710	.	+	1	ID=BF_RS05175.p01;Parent=BF_RS05175.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930807.1;locus_tag=BF_RS05175;old_locus_tag=BF1100;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_005799504.1;transl_table=11;translation=length.384
NC_006347	GenBank	exon	7556	8710	.	+	1	Parent=BF_RS05175.t01
NC_006347	GenBank	gene	8707	9798	.	+	1	ID=BF_RS05180;Name=BF_RS05180;old_locus_tag=BF1101
NC_006347	GenBank	mRNA	8707	9798	.	+	1	ID=BF_RS05180.t01;Parent=BF_RS05180
NC_006347	GenBank	CDS	8707	9798	.	+	1	ID=BF_RS05180.p01;Parent=BF_RS05180.t01;Name=BF_RS05180;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795857.1;old_locus_tag=BF1101;product=glycosyltransferase;protein_id=WP_005795857.1;transl_table=11;translation=length.363
NC_006347	GenBank	exon	8707	9798	.	+	1	Parent=BF_RS05180.t01
NC_006347	GenBank	gene	9786	10217	.	+	1	ID=BF_RS05185;Name=BF_RS05185;old_locus_tag=BF1102
NC_006347	GenBank	mRNA	9786	10217	.	+	1	ID=BF_RS05185.t01;Parent=BF_RS05185
NC_006347	GenBank	CDS	9786	10217	.	+	1	ID=BF_RS05185.p01;Parent=BF_RS05185.t01;Name=BF_RS05185;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795855.1;old_locus_tag=BF1102;product=WxcM-like domain-containing protein;protein_id=WP_005795855.1;transl_table=11;translation=length.143
NC_006347	GenBank	exon	9786	10217	.	+	1	Parent=BF_RS05185.t01
NC_006347	GenBank	gene	10192	10617	.	+	1	ID=BF_RS05190;Name=BF_RS05190;old_locus_tag=BF1103
NC_006347	GenBank	mRNA	10192	10617	.	+	1	ID=BF_RS05190.t01;Parent=BF_RS05190
NC_006347	GenBank	CDS	10192	10617	.	+	1	ID=BF_RS05190.p01;Parent=BF_RS05190.t01;Name=BF_RS05190;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009133374.1;old_locus_tag=BF1103;product=WxcM-like domain-containing protein;protein_id=WP_011202258.1;transl_table=11;translation=length.141
NC_006347	GenBank	exon	10192	10617	.	+	1	Parent=BF_RS05190.t01
NC_006347	GenBank	gene	10614	11714	.	+	1	ID=BF_RS05195;Name=BF_RS05195;old_locus_tag=BF1104
NC_006347	GenBank	mRNA	10614	11714	.	+	1	ID=BF_RS05195.t01;Parent=BF_RS05195
NC_006347	GenBank	CDS	10614	11714	.	+	1	ID=BF_RS05195.p01;Parent=BF_RS05195.t01;Name=BF_RS05195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795850.1;old_locus_tag=BF1104;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_005795850.1;transl_table=11;translation=length.366
NC_006347	GenBank	exon	10614	11714	.	+	1	Parent=BF_RS05195.t01
NC_006347	GenBank	gene	11711	12706	.	+	1	ID=BF_RS05200;Name=BF_RS05200;old_locus_tag=BF1105
NC_006347	GenBank	mRNA	11711	12706	.	+	1	ID=BF_RS05200.t01;Parent=BF_RS05200
NC_006347	GenBank	CDS	11711	12706	.	+	1	ID=BF_RS05200.p01;Parent=BF_RS05200.t01;Name=BF_RS05200;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202259.1;old_locus_tag=BF1105;product=glycosyl transferase;protein_id=WP_011202259.1;transl_table=11;translation=length.331
NC_006347	GenBank	exon	11711	12706	.	+	1	Parent=BF_RS05200.t01
NC_006347	GenBank	gene	12708	13733	.	+	1	ID=BF_RS05205;Name=BF_RS05205;old_locus_tag=BF1106
NC_006347	GenBank	mRNA	12708	13733	.	+	1	ID=BF_RS05205.t01;Parent=BF_RS05205
NC_006347	GenBank	CDS	12708	13733	.	+	1	ID=BF_RS05205.p01;Parent=BF_RS05205.t01;Name=BF_RS05205;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005829185.1;old_locus_tag=BF1106;product=polysaccharide biosynthesis protein;protein_id=WP_011202260.1;transl_table=11;translation=length.341
NC_006347	GenBank	exon	12708	13733	.	+	1	Parent=BF_RS05205.t01
NC_006347	GenBank	gene	13778	14929	.	+	1	ID=BF_RS05210;Name=BF_RS05210;old_locus_tag=BF1107
NC_006347	GenBank	mRNA	13778	14929	.	+	1	ID=BF_RS05210.t01;Parent=BF_RS05210
NC_006347	GenBank	CDS	13778	14929	.	+	1	ID=BF_RS05210.p01;Parent=BF_RS05210.t01;Name=BF_RS05210;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008157442.1;old_locus_tag=BF1107;product=capsular polysaccharide biosynthesis protein CapF;protein_id=WP_011202261.1;transl_table=11;translation=length.383
NC_006347	GenBank	exon	13778	14929	.	+	1	Parent=BF_RS05210.t01
NC_006347	GenBank	gene	14937	16121	.	+	1	ID=BF_RS05215;Name=wecB;locus_tag=BF_RS05215;old_locus_tag=BF1108
NC_006347	GenBank	mRNA	14937	16121	.	+	1	ID=BF_RS05215.t01;Parent=BF_RS05215
NC_006347	GenBank	CDS	14937	16121	.	+	1	ID=BF_RS05215.p01;Parent=BF_RS05215.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014547289.1;locus_tag=BF_RS05215;old_locus_tag=BF1108;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_011202262.1;transl_table=11;translation=length.394
NC_006347	GenBank	exon	14937	16121	.	+	1	Parent=BF_RS05215.t01
NC_006347	GenBank	gene	16132	17340	.	+	1	ID=BF_RS05220;Name=BF_RS05220;old_locus_tag=BF1109
NC_006347	GenBank	mRNA	16132	17340	.	+	1	ID=BF_RS05220.t01;Parent=BF_RS05220
NC_006347	GenBank	CDS	16132	17340	.	+	1	ID=BF_RS05220.p01;Parent=BF_RS05220.t01;Name=BF_RS05220;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005807485.1;old_locus_tag=BF1109;product=glycosyltransferase family 4 protein;protein_id=WP_011202263.1;transl_table=11;translation=length.402
NC_006347	GenBank	exon	16132	17340	.	+	1	Parent=BF_RS05220.t01
NC_006347	GenBank	gene	17343	17951	.	+	1	ID=BF_RS05225;Name=BF_RS05225;old_locus_tag=BF1110
NC_006347	GenBank	mRNA	17343	17951	.	+	1	ID=BF_RS05225.t01;Parent=BF_RS05225
NC_006347	GenBank	CDS	17343	17951	.	+	1	ID=BF_RS05225.p01;Parent=BF_RS05225.t01;Name=BF_RS05225;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007485209.1;old_locus_tag=BF1110;product=sugar transferase;protein_id=WP_011202264.1;transl_table=11;translation=length.202
NC_006347	GenBank	exon	17343	17951	.	+	1	Parent=BF_RS05225.t01
NC_006347	GenBank	gene	17964	18548	.	+	1	ID=BF_RS05230;Name=BF_RS05230;old_locus_tag=BF1111
NC_006347	GenBank	mRNA	17964	18548	.	+	1	ID=BF_RS05230.t01;Parent=BF_RS05230
NC_006347	GenBank	CDS	17964	18548	.	+	1	ID=BF_RS05230.p01;Parent=BF_RS05230.t01;Name=BF_RS05230;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005807481.1;old_locus_tag=BF1111;product=acetyltransferase;protein_id=WP_005795841.1;transl_table=11;translation=length.194
NC_006347	GenBank	exon	17964	18548	.	+	1	Parent=BF_RS05230.t01
NC_006347	GenBank	gene	18562	19692	.	+	1	ID=BF_RS05235;Name=BF_RS05235;old_locus_tag=BF1112
NC_006347	GenBank	mRNA	18562	19692	.	+	1	ID=BF_RS05235.t01;Parent=BF_RS05235
NC_006347	GenBank	CDS	18562	19692	.	+	1	ID=BF_RS05235.p01;Parent=BF_RS05235.t01;Name=BF_RS05235;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007485218.1;old_locus_tag=BF1112;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_011202265.1;transl_table=11;translation=length.376
NC_006347	GenBank	exon	18562	19692	.	+	1	Parent=BF_RS05235.t01
NC_006347	GenBank	gene	19740	20243	.	+	1	ID=BF_RS05240;Name=BF_RS05240;old_locus_tag=BF1113
NC_006347	GenBank	mRNA	19740	20243	.	+	1	ID=BF_RS05240.t01;Parent=BF_RS05240
NC_006347	GenBank	CDS	19740	20243	.	+	1	ID=BF_RS05240.p01;Parent=BF_RS05240.t01;Name=BF_RS05240;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202266.1;old_locus_tag=BF1113;product=hypothetical protein;protein_id=WP_011202266.1;transl_table=11;translation=length.167
NC_006347	GenBank	exon	19740	20243	.	+	1	Parent=BF_RS05240.t01