##gff-version 3
##sequence-region NC_006347 1 22274
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	22274	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	4	.	+	1	ID=BF_RS08610;Name=BF_RS08610;old_locus_tag=BF1829
NC_006347	GenBank	mRNA	1	4	.	+	1	ID=BF_RS08610.t01;Parent=BF_RS08610
NC_006347	GenBank	CDS	1	4	.	+	1	ID=BF_RS08610.p01;Parent=BF_RS08610.t01;Name=BF_RS08610;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008769903.1;old_locus_tag=BF1829;product=transcriptional regulator;protein_id=WP_005817126.1;transl_table=11;translation=length.161
NC_006347	GenBank	exon	1	4	.	+	1	Parent=BF_RS08610.t01
NC_006347	GenBank	gene	1	1284	.	+	1	ID=BF_RS08615;Name=BF_RS08615;old_locus_tag=BF1830
NC_006347	GenBank	mRNA	1	1284	.	+	1	ID=BF_RS08615.t01;Parent=BF_RS08615
NC_006347	GenBank	CDS	1	1284	.	+	1	ID=BF_RS08615.p01;Parent=BF_RS08615.t01;Name=BF_RS08615;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010992741.1;old_locus_tag=BF1830;product=hypothetical protein;protein_id=WP_005817129.1;transl_table=11;translation=length.427
NC_006347	GenBank	exon	1	1284	.	+	1	Parent=BF_RS08615.t01
NC_006347	GenBank	gene	1277	1996	.	+	1	ID=BF_RS08620;Name=BF_RS08620;old_locus_tag=BF1831
NC_006347	GenBank	mRNA	1277	1996	.	+	1	ID=BF_RS08620.t01;Parent=BF_RS08620
NC_006347	GenBank	CDS	1277	1996	.	+	1	ID=BF_RS08620.p01;Parent=BF_RS08620.t01;Name=BF_RS08620;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298683.1;old_locus_tag=BF1831;product=phosphocholine cytidylyltransferase family protein;protein_id=WP_011202609.1;transl_table=11;translation=length.239
NC_006347	GenBank	exon	1277	1996	.	+	1	Parent=BF_RS08620.t01
NC_006347	GenBank	gene	2016	3317	.	+	1	ID=BF_RS08625;Name=aepX;locus_tag=BF_RS08625;old_locus_tag=BF1832
NC_006347	GenBank	mRNA	2016	3317	.	+	1	ID=BF_RS08625.t01;Parent=BF_RS08625
NC_006347	GenBank	CDS	2016	3317	.	+	1	ID=BF_RS08625.p01;Parent=BF_RS08625.t01;eC_number=5.4.2.9;Name=aepX;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006188323.1;locus_tag=BF_RS08625;old_locus_tag=BF1832;product=phosphoenolpyruvate mutase;protein_id=WP_005817134.1;transl_table=11;translation=length.433
NC_006347	GenBank	exon	2016	3317	.	+	1	Parent=BF_RS08625.t01
NC_006347	GenBank	gene	3329	4465	.	+	1	ID=BF_RS08630;Name=aepY;locus_tag=BF_RS08630;old_locus_tag=BF1833
NC_006347	GenBank	mRNA	3329	4465	.	+	1	ID=BF_RS08630.t01;Parent=BF_RS08630
NC_006347	GenBank	CDS	3329	4465	.	+	1	ID=BF_RS08630.p01;Parent=BF_RS08630.t01;eC_number=4.1.1.82;Name=aepY;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817136.1;locus_tag=BF_RS08630;old_locus_tag=BF1833;product=phosphonopyruvate decarboxylase;protein_id=WP_005817136.1;transl_table=11;translation=length.378
NC_006347	GenBank	exon	3329	4465	.	+	1	Parent=BF_RS08630.t01
NC_006347	GenBank	gene	4462	5562	.	+	1	ID=BF_RS08635;Name=BF_RS08635;old_locus_tag=BF1834
NC_006347	GenBank	mRNA	4462	5562	.	+	1	ID=BF_RS08635.t01;Parent=BF_RS08635
NC_006347	GenBank	CDS	4462	5562	.	+	1	ID=BF_RS08635.p01;Parent=BF_RS08635.t01;eC_number=2.6.1.37;Name=BF_RS08635;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817138.1;old_locus_tag=BF1834;product=2-aminoethylphosphonate--pyruvate transaminase;protein_id=WP_011202611.1;transl_table=11;translation=length.366
NC_006347	GenBank	exon	4462	5562	.	+	1	Parent=BF_RS08635.t01
NC_006347	GenBank	gene	5582	7075	.	+	1	ID=BF_RS08640;Name=BF_RS08640;old_locus_tag=BF1835
NC_006347	GenBank	mRNA	5582	7075	.	+	1	ID=BF_RS08640.t01;Parent=BF_RS08640
NC_006347	GenBank	CDS	5582	7075	.	+	1	ID=BF_RS08640.p01;Parent=BF_RS08640.t01;Name=BF_RS08640;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817140.1;old_locus_tag=BF1835;product=oligosaccharide flippase family protein;protein_id=WP_011202612.1;transl_table=11;translation=length.497
NC_006347	GenBank	exon	5582	7075	.	+	1	Parent=BF_RS08640.t01
NC_006347	GenBank	gene	7079	8224	.	+	1	ID=BF_RS08645;Name=BF_RS08645;old_locus_tag=BF1836
NC_006347	GenBank	mRNA	7079	8224	.	+	1	ID=BF_RS08645.t01;Parent=BF_RS08645
NC_006347	GenBank	CDS	7079	8224	.	+	1	ID=BF_RS08645.p01;Parent=BF_RS08645.t01;Name=BF_RS08645;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817142.1;old_locus_tag=BF1836;product=hypothetical protein;protein_id=WP_005817142.1;transl_table=11;translation=length.381
NC_006347	GenBank	exon	7079	8224	.	+	1	Parent=BF_RS08645.t01
NC_006347	GenBank	gene	8221	9090	.	+	1	ID=BF_RS08650;Name=BF_RS08650;old_locus_tag=BF1837
NC_006347	GenBank	mRNA	8221	9090	.	+	1	ID=BF_RS08650.t01;Parent=BF_RS08650
NC_006347	GenBank	CDS	8221	9090	.	+	1	ID=BF_RS08650.p01;Parent=BF_RS08650.t01;Name=BF_RS08650;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817145.1;old_locus_tag=BF1837;product=alpha-1%2C2-fucosyltransferase;protein_id=WP_005817145.1;transl_table=11;translation=length.289
NC_006347	GenBank	exon	8221	9090	.	+	1	Parent=BF_RS08650.t01
NC_006347	GenBank	gene	9098	10150	.	+	1	ID=BF_RS08655;Name=BF_RS08655;old_locus_tag=BF1838
NC_006347	GenBank	mRNA	9098	10150	.	+	1	ID=BF_RS08655.t01;Parent=BF_RS08655
NC_006347	GenBank	CDS	9098	10150	.	+	1	ID=BF_RS08655.p01;Parent=BF_RS08655.t01;Name=BF_RS08655;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923251.1;old_locus_tag=BF1838;product=NAD-dependent epimerase;protein_id=WP_005817148.1;transl_table=11;translation=length.350
NC_006347	GenBank	exon	9098	10150	.	+	1	Parent=BF_RS08655.t01
NC_006347	GenBank	gene	10153	11475	.	+	1	ID=BF_RS08660;Name=BF_RS08660;old_locus_tag=BF1839
NC_006347	GenBank	mRNA	10153	11475	.	+	1	ID=BF_RS08660.t01;Parent=BF_RS08660
NC_006347	GenBank	CDS	10153	11475	.	+	1	ID=BF_RS08660.p01;Parent=BF_RS08660.t01;Name=BF_RS08660;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817149.1;old_locus_tag=BF1839;product=UDP-glucose/GDP-mannose dehydrogenase family protein;protein_id=WP_005817149.1;transl_table=11;translation=length.440
NC_006347	GenBank	exon	10153	11475	.	+	1	Parent=BF_RS08660.t01
NC_006347	GenBank	gene	11759	12781	.	+	1	ID=BF_RS08665;Name=BF_RS08665;old_locus_tag=BF1840
NC_006347	GenBank	mRNA	11759	12781	.	+	1	ID=BF_RS08665.t01;Parent=BF_RS08665
NC_006347	GenBank	CDS	11759	12781	.	+	1	ID=BF_RS08665.p01;Parent=BF_RS08665.t01;Name=BF_RS08665;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010992744.1;old_locus_tag=BF1840;product=glycosyltransferase;protein_id=WP_010992744.1;transl_table=11;translation=length.340
NC_006347	GenBank	exon	11759	12781	.	+	1	Parent=BF_RS08665.t01
NC_006347	GenBank	gene	12811	13857	.	+	1	ID=BF_RS08670;Name=BF_RS08670;old_locus_tag=BF1841
NC_006347	GenBank	mRNA	12811	13857	.	+	1	ID=BF_RS08670.t01;Parent=BF_RS08670
NC_006347	GenBank	CDS	12811	13857	.	+	1	ID=BF_RS08670.p01;Parent=BF_RS08670.t01;Name=BF_RS08670;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010992745.1;old_locus_tag=BF1841;product=glycosyltransferase family 2 protein;protein_id=WP_010992745.1;transl_table=11;translation=length.348
NC_006347	GenBank	exon	12811	13857	.	+	1	Parent=BF_RS08670.t01
NC_006347	GenBank	gene	13854	14984	.	+	1	ID=BF_RS08675;Name=BF_RS08675;old_locus_tag=BF1842
NC_006347	GenBank	mRNA	13854	14984	.	+	1	ID=BF_RS08675.t01;Parent=BF_RS08675
NC_006347	GenBank	CDS	13854	14984	.	+	1	ID=BF_RS08675.p01;Parent=BF_RS08675.t01;Name=BF_RS08675;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817155.1;old_locus_tag=BF1842;product=polymerase;protein_id=WP_005817155.1;transl_table=11;translation=length.376
NC_006347	GenBank	exon	13854	14984	.	+	1	Parent=BF_RS08675.t01
NC_006347	GenBank	gene	14956	16071	.	+	1	ID=BF_RS08680;Name=BF_RS08680;old_locus_tag=BF1843
NC_006347	GenBank	mRNA	14956	16071	.	+	1	ID=BF_RS08680.t01;Parent=BF_RS08680
NC_006347	GenBank	CDS	14956	16071	.	+	1	ID=BF_RS08680.p01;Parent=BF_RS08680.t01;Name=BF_RS08680;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011202613.1;old_locus_tag=BF1843;product=glycosyltransferase family 4 protein;protein_id=WP_011202613.1;transl_table=11;translation=length.371
NC_006347	GenBank	exon	14956	16071	.	+	1	Parent=BF_RS08680.t01
NC_006347	GenBank	gene	16064	17080	.	+	1	ID=BF_RS08685;Name=BF_RS08685;old_locus_tag=BF1844
NC_006347	GenBank	mRNA	16064	17080	.	+	1	ID=BF_RS08685.t01;Parent=BF_RS08685
NC_006347	GenBank	CDS	16064	17080	.	+	1	ID=BF_RS08685.p01;Parent=BF_RS08685.t01;Name=BF_RS08685;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005817159.1;old_locus_tag=BF1844;product=polysaccharide biosynthesis protein;protein_id=WP_005817159.1;transl_table=11;translation=length.338
NC_006347	GenBank	exon	16064	17080	.	+	1	Parent=BF_RS08685.t01
NC_006347	GenBank	gene	17068	18198	.	+	1	ID=BF_RS08690;Name=wecB;locus_tag=BF_RS08690;old_locus_tag=BF1844.1
NC_006347	GenBank	mRNA	17068	18198	.	+	1	ID=BF_RS08690.t01;Parent=BF_RS08690
NC_006347	GenBank	CDS	17068	18198	.	+	1	ID=BF_RS08690.p01;Parent=BF_RS08690.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005786857.1;locus_tag=BF_RS08690;old_locus_tag=BF1844.1;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_005817161.1;transl_table=11;translation=length.376
NC_006347	GenBank	exon	17068	18198	.	+	1	Parent=BF_RS08690.t01
NC_006347	GenBank	gene	18219	19082	.	+	1	ID=BF_RS08695;Name=BF_RS08695;old_locus_tag=BF1845
NC_006347	GenBank	mRNA	18219	19082	.	+	1	ID=BF_RS08695.t01;Parent=BF_RS08695
NC_006347	GenBank	CDS	18219	19082	.	+	1	ID=BF_RS08695.p01;Parent=BF_RS08695.t01;Name=BF_RS08695;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298697.1;old_locus_tag=BF1845;product=SDR family oxidoreductase;protein_id=WP_010992747.1;transl_table=11;translation=length.287
NC_006347	GenBank	exon	18219	19082	.	+	1	Parent=BF_RS08695.t01
NC_006347	GenBank	gene	19079	20290	.	+	1	ID=BF_RS08700;Name=BF_RS08700;old_locus_tag=BF1846
NC_006347	GenBank	mRNA	19079	20290	.	+	1	ID=BF_RS08700.t01;Parent=BF_RS08700
NC_006347	GenBank	CDS	19079	20290	.	+	1	ID=BF_RS08700.p01;Parent=BF_RS08700.t01;Name=BF_RS08700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005776619.1;old_locus_tag=BF1846;product=glycosyltransferase family 4 protein;protein_id=WP_005776619.1;transl_table=11;translation=length.403
NC_006347	GenBank	exon	19079	20290	.	+	1	Parent=BF_RS08700.t01
NC_006347	GenBank	gene	20313	21320	.	+	1	ID=BF_RS08705;Name=BF_RS08705;old_locus_tag=BF1847
NC_006347	GenBank	mRNA	20313	21320	.	+	1	ID=BF_RS08705.t01;Parent=BF_RS08705
NC_006347	GenBank	CDS	20313	21320	.	+	1	ID=BF_RS08705.p01;Parent=BF_RS08705.t01;Name=BF_RS08705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005819698.1;old_locus_tag=BF1847;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_005786859.1;transl_table=11;translation=length.335
NC_006347	GenBank	exon	20313	21320	.	+	1	Parent=BF_RS08705.t01
NC_006347	GenBank	gene	21324	22274	.	+	1	ID=BF_RS08710;Name=BF_RS08710;old_locus_tag=BF1848
NC_006347	GenBank	mRNA	21324	22274	.	+	1	ID=BF_RS08710.t01;Parent=BF_RS08710
NC_006347	GenBank	CDS	21324	22274	.	+	1	ID=BF_RS08710.p01;Parent=BF_RS08710.t01;Name=BF_RS08710;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007480532.1;old_locus_tag=BF1848;product=glycosyltransferase family 4 protein;protein_id=WP_005786860.1;transl_table=11;translation=length.316
NC_006347	GenBank	exon	21324	22274	.	+	1	Parent=BF_RS08710.t01