##gff-version 3
##sequence-region NC_006347 1 16145
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis YCH46
# Note Bacteroides fragilis YCH46, complete genome.
# date 04-APR-2020
NC_006347	GenBank	region	1	16145	.	+	1	ID=NC_006347;Dbxref=BioProject:PRJNA224116,taxon:295405;Name=NC_006347;Note=Bacteroides fragilis YCH46%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara,Haruyuki Nakayama,Natsumi Okada,Yoshinari Ohnishi (University of Tokushima),Hideki Hirakawa,Satoru Kuhara (Kyushu University),Tetsuya Hayashi (Miyazaki Medical College),and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,454 CDSs (total) :: 4,360 Genes (coding) :: 4,278 CDSs (with protein) :: 4,278 Genes (RNA) :: 94 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AP006841. This work was done in collaboration with Tomomi Kuwahara%2C Haruyuki Nakayama%2C Natsumi Okada%2C Yoshinari Ohnishi (University of Tokushima)%2C Hideki Hirakawa%2C Satoru Kuhara (Kyushu University)%2C Tetsuya Hayashi (Miyazaki Medical College)%2C and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 09:42:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C454 CDSs (total) :: 4%2C360 Genes (coding) :: 4%2C278 CDSs (with protein) :: 4%2C278 Genes (RNA) :: 94 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 74 ncRNAs :: 2 Pseudo Genes (total) :: 82 CDSs (without protein) :: 82 Pseudo Genes (ambiguous residues) :: 0 of 82 Pseudo Genes (frameshifted) :: 42 of 82 Pseudo Genes (incomplete) :: 34 of 82 Pseudo Genes (internal stop) :: 28 of 82 Pseudo Genes (multiple problems) :: 17 of 82 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Bacteroides fragilis YCH46;strain=YCH46
NC_006347	GenBank	gene	1	1209	.	+	1	ID=BF_RS06720;Name=BF_RS06720;old_locus_tag=BF1430
NC_006347	GenBank	mRNA	1	1209	.	+	1	ID=BF_RS06720.t01;Parent=BF_RS06720
NC_006347	GenBank	CDS	1	1209	.	+	1	ID=BF_RS06720.p01;Parent=BF_RS06720.t01;Name=BF_RS06720;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010992162.1;old_locus_tag=BF1430;product=UDP-N-acetylglucosamine 4%2C6-dehydratase;protein_id=WP_011202418.1;transl_table=11;translation=length.402
NC_006347	GenBank	exon	1	1209	.	+	1	Parent=BF_RS06720.t01
NC_006347	GenBank	gene	1221	2363	.	+	1	ID=BF_RS06725;Name=BF_RS06725;old_locus_tag=BF1431
NC_006347	GenBank	mRNA	1221	2363	.	+	1	ID=BF_RS06725.t01;Parent=BF_RS06725
NC_006347	GenBank	CDS	1221	2363	.	+	1	ID=BF_RS06725.p01;Parent=BF_RS06725.t01;Name=BF_RS06725;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795366.1;old_locus_tag=BF1431;product=LegC family aminotransferase;protein_id=WP_011202419.1;transl_table=11;translation=length.380
NC_006347	GenBank	exon	1221	2363	.	+	1	Parent=BF_RS06725.t01
NC_006347	GenBank	gene	2369	2590	.	+	1	ID=BF_RS06730;Name=BF_RS06730;old_locus_tag=BF1432
NC_006347	GenBank	mRNA	2369	2590	.	+	1	ID=BF_RS06730.t01;Parent=BF_RS06730
NC_006347	GenBank	CDS	2369	2590	.	+	1	ID=BF_RS06730.p01;Parent=BF_RS06730.t01;Name=BF_RS06730;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006951957.1;old_locus_tag=BF1432;product=acyl carrier protein;protein_id=WP_005776094.1;transl_table=11;translation=length.73
NC_006347	GenBank	exon	2369	2590	.	+	1	Parent=BF_RS06730.t01
NC_006347	GenBank	gene	2592	3809	.	+	1	ID=BF_RS06735;Name=BF_RS06735;old_locus_tag=BF1433
NC_006347	GenBank	mRNA	2592	3809	.	+	1	ID=BF_RS06735.t01;Parent=BF_RS06735
NC_006347	GenBank	CDS	2592	3809	.	+	1	ID=BF_RS06735.p01;Parent=BF_RS06735.t01;Name=BF_RS06735;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005800810.1;old_locus_tag=BF1433;product=long-chain fatty acid--CoA ligase;protein_id=WP_005795364.1;transl_table=11;translation=length.405
NC_006347	GenBank	exon	2592	3809	.	+	1	Parent=BF_RS06735.t01
NC_006347	GenBank	gene	3806	4528	.	+	1	ID=BF_RS06740;Name=BF_RS06740;old_locus_tag=BF1434
NC_006347	GenBank	mRNA	3806	4528	.	+	1	ID=BF_RS06740.t01;Parent=BF_RS06740
NC_006347	GenBank	CDS	3806	4528	.	+	1	ID=BF_RS06740.p01;Parent=BF_RS06740.t01;Name=BF_RS06740;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006951961.1;old_locus_tag=BF1434;product=SDR family oxidoreductase;protein_id=WP_005800809.1;transl_table=11;translation=length.240
NC_006347	GenBank	exon	3806	4528	.	+	1	Parent=BF_RS06740.t01
NC_006347	GenBank	gene	4531	5172	.	+	1	ID=BF_RS06745;Name=BF_RS06745;old_locus_tag=BF1435
NC_006347	GenBank	mRNA	4531	5172	.	+	1	ID=BF_RS06745.t01;Parent=BF_RS06745
NC_006347	GenBank	CDS	4531	5172	.	+	1	ID=BF_RS06745.p01;Parent=BF_RS06745.t01;Name=BF_RS06745;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795360.1;old_locus_tag=BF1435;product=acetyltransferase;protein_id=WP_005795360.1;transl_table=11;translation=length.213
NC_006347	GenBank	exon	4531	5172	.	+	1	Parent=BF_RS06745.t01
NC_006347	GenBank	gene	5187	6236	.	+	1	ID=BF_RS06750;Name=BF_RS06750;old_locus_tag=BF1436
NC_006347	GenBank	mRNA	5187	6236	.	+	1	ID=BF_RS06750.t01;Parent=BF_RS06750
NC_006347	GenBank	CDS	5187	6236	.	+	1	ID=BF_RS06750.p01;Parent=BF_RS06750.t01;Name=BF_RS06750;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795358.1;old_locus_tag=BF1436;product=NTP transferase domain-containing protein;protein_id=WP_005795358.1;transl_table=11;translation=length.349
NC_006347	GenBank	exon	5187	6236	.	+	1	Parent=BF_RS06750.t01
NC_006347	GenBank	gene	6252	7430	.	+	1	ID=BF_RS06755;Name=BF_RS06755;old_locus_tag=BF1437
NC_006347	GenBank	mRNA	6252	7430	.	+	1	ID=BF_RS06755.t01;Parent=BF_RS06755
NC_006347	GenBank	CDS	6252	7430	.	+	1	ID=BF_RS06755.p01;Parent=BF_RS06755.t01;Name=BF_RS06755;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005776100.1;old_locus_tag=BF1437;product=glycosyltransferase;protein_id=WP_011202420.1;transl_table=11;translation=length.392
NC_006347	GenBank	exon	6252	7430	.	+	1	Parent=BF_RS06755.t01
NC_006347	GenBank	gene	7741	8925	.	+	1	ID=BF_RS06760;Name=BF_RS06760;old_locus_tag=BF1438
NC_006347	GenBank	mRNA	7741	8925	.	+	1	ID=BF_RS06760.t01;Parent=BF_RS06760
NC_006347	GenBank	CDS	7741	8925	.	+	1	ID=BF_RS06760.p01;Parent=BF_RS06760.t01;Name=BF_RS06760;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005776102.1;old_locus_tag=BF1438;product=hypothetical protein;protein_id=WP_032572936.1;transl_table=11;translation=length.394
NC_006347	GenBank	exon	7741	8925	.	+	1	Parent=BF_RS06760.t01
NC_006347	GenBank	gene	8912	10168	.	+	1	ID=BF_RS06765;Name=BF_RS06765;old_locus_tag=BF1439
NC_006347	GenBank	mRNA	8912	10168	.	+	1	ID=BF_RS06765.t01;Parent=BF_RS06765
NC_006347	GenBank	CDS	8912	10168	.	+	1	ID=BF_RS06765.p01;Parent=BF_RS06765.t01;Name=BF_RS06765;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795350.1;old_locus_tag=BF1439;product=oligosaccharide flippase family protein;protein_id=WP_011202422.1;transl_table=11;translation=length.418
NC_006347	GenBank	exon	8912	10168	.	+	1	Parent=BF_RS06765.t01
NC_006347	GenBank	gene	10175	11212	.	+	1	ID=BF_RS06770;Name=BF_RS06770;old_locus_tag=BF1440
NC_006347	GenBank	mRNA	10175	11212	.	+	1	ID=BF_RS06770.t01;Parent=BF_RS06770
NC_006347	GenBank	CDS	10175	11212	.	+	1	ID=BF_RS06770.p01;Parent=BF_RS06770.t01;Name=BF_RS06770;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795349.1;old_locus_tag=BF1440;product=EpsG family protein;protein_id=WP_011202423.1;transl_table=11;translation=length.345
NC_006347	GenBank	exon	10175	11212	.	+	1	Parent=BF_RS06770.t01
NC_006347	GenBank	gene	11223	12479	.	+	1	ID=BF_RS06775;Name=BF_RS06775;old_locus_tag=BF1441
NC_006347	GenBank	mRNA	11223	12479	.	+	1	ID=BF_RS06775.t01;Parent=BF_RS06775
NC_006347	GenBank	CDS	11223	12479	.	+	1	ID=BF_RS06775.p01;Parent=BF_RS06775.t01;Name=BF_RS06775;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795347.1;old_locus_tag=BF1441;product=nucleotide sugar dehydrogenase;protein_id=WP_005795347.1;transl_table=11;translation=length.418
NC_006347	GenBank	exon	11223	12479	.	+	1	Parent=BF_RS06775.t01
NC_006347	GenBank	gene	12487	13458	.	+	1	ID=BF_RS06780;Name=BF_RS06780;old_locus_tag=BF1442
NC_006347	GenBank	mRNA	12487	13458	.	+	1	ID=BF_RS06780.t01;Parent=BF_RS06780
NC_006347	GenBank	CDS	12487	13458	.	+	1	ID=BF_RS06780.p01;Parent=BF_RS06780.t01;Name=BF_RS06780;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795345.1;old_locus_tag=BF1442;product=glycosyltransferase family 2 protein;protein_id=WP_005795345.1;transl_table=11;translation=length.323
NC_006347	GenBank	exon	12487	13458	.	+	1	Parent=BF_RS06780.t01
NC_006347	GenBank	gene	13468	14274	.	+	1	ID=BF_RS06785;Name=BF_RS06785;old_locus_tag=BF1443
NC_006347	GenBank	mRNA	13468	14274	.	+	1	ID=BF_RS06785.t01;Parent=BF_RS06785
NC_006347	GenBank	CDS	13468	14274	.	+	1	ID=BF_RS06785.p01;Parent=BF_RS06785.t01;Name=BF_RS06785;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005795343.1;old_locus_tag=BF1443;product=glycosyltransferase;protein_id=WP_005795343.1;transl_table=11;translation=length.268
NC_006347	GenBank	exon	13468	14274	.	+	1	Parent=BF_RS06785.t01
NC_006347	GenBank	gene	14303	15526	.	+	1	ID=BF_RS06790;Name=BF_RS06790;old_locus_tag=BF1444
NC_006347	GenBank	mRNA	14303	15526	.	+	1	ID=BF_RS06790.t01;Parent=BF_RS06790
NC_006347	GenBank	CDS	14303	15526	.	+	1	ID=BF_RS06790.p01;Parent=BF_RS06790.t01;Name=BF_RS06790;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005786175.1;old_locus_tag=BF1444;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_011202424.1;transl_table=11;translation=length.407
NC_006347	GenBank	exon	14303	15526	.	+	1	Parent=BF_RS06790.t01
NC_006347	GenBank	gene	15558	16145	.	+	1	ID=BF_RS06795;Name=BF_RS06795;old_locus_tag=BF1445
NC_006347	GenBank	mRNA	15558	16145	.	+	1	ID=BF_RS06795.t01;Parent=BF_RS06795
NC_006347	GenBank	CDS	15558	16145	.	+	1	ID=BF_RS06795.p01;Parent=BF_RS06795.t01;Name=BF_RS06795;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203508.1;old_locus_tag=BF1445;product=sugar transferase;protein_id=WP_005795339.1;transl_table=11;translation=length.195
NC_006347	GenBank	exon	15558	16145	.	+	1	Parent=BF_RS06795.t01