##gff-version 3
##sequence-region CR626927 1 14582
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis NCTC 9343
# Note Bacteroides fragilis NCTC 9343, complete genome.
# date 06-FEB-2015
CR626927	GenBank	region	1	14582	.	+	1	ID=CR626927;Dbxref=BioProject:PRJNA46,taxon:272559;Name=CR626927;Note=Bacteroides fragilis NCTC 9343%2C complete genome.,Accession number for plasmid pBF9343 in this genome project: CR626928. ;comment1=Accession number for plasmid pBF9343 in this genome project: CR626928. ;culture_collection=ATCC:25285,NCTC:9343;date=06-FEB-2015;mol_type=genomic DNA;organism=Bacteroides fragilis NCTC 9343;type_material=type strain of Bacteroides fragilis
CR626927	GenBank	gene	1	954	.	-	1	ID=BF9343_2510;Name=BF9343_2510
CR626927	GenBank	mRNA	1	954	.	-	1	ID=BF9343_2510.t01;Parent=BF9343_2510
CR626927	GenBank	CDS	1	954	.	-	1	ID=BF9343_2510.p01;Parent=BF9343_2510.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2510,EnsemblGenomes-Tr:CAH08291,GOA:Q5LC75,InterPro:IPR000715,UniProtKB/TrEMBL:Q5LC75;Name=BF9343_2510;Note=Similar to previously sequenced Bacteroides fragilis putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase WcfL SWALL:Q9XDJ1 (EMBL:AF048749) (318 aa) fasta scores: E(): 2e-113%2C 85.3%25 id in 313 aa%2C and to Rickettsia prowazekii undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RP825 SWALL:Q9ZCD2 (EMBL:AJ235273) (326 aa) fasta scores: E(): 3.6e-18%2C 28.35%25 id in 328 aa;codon_start=1;old_locus_tag=BF2591;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH08291.1;transl_table=11;translation=length.317
CR626927	GenBank	exon	1	954	.	-	1	Parent=BF9343_2510.t01
CR626927	GenBank	gene	1072	1968	.	-	1	ID=BF9343_2511;Name=BF9343_2511
CR626927	GenBank	mRNA	1072	1968	.	-	1	ID=BF9343_2511.t01;Parent=BF9343_2511
CR626927	GenBank	CDS	1072	1968	.	-	1	ID=BF9343_2511.p01;Parent=BF9343_2511.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2511,EnsemblGenomes-Tr:CAH08292,GOA:Q5LC74,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q5LC74;Name=BF9343_2511;Note=Similar to Edwardsiella ictaluri UDP-glucose 4-epimerase WbeIT SWALL:Q937X6 (EMBL:AY057452) (323 aa) fasta scores: E(): 6.3e-16%2C 30.1%25 id in 299 aa%2C and to Vibrio cholerae UDP-glucose 4-epimerase GalE or WbfT SWALL:GALE_VIBCH (SWALL:Q56623) (328 aa) fasta scores: E(): 1.7e-10%2C 26.77%25 id in 310 aa;codon_start=1;old_locus_tag=BF2592;product=putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase;protein_id=CAH08292.1;transl_table=11;translation=length.298
CR626927	GenBank	exon	1072	1968	.	-	1	Parent=BF9343_2511.t01
CR626927	GenBank	gene	1987	3018	.	-	1	ID=BF9343_2512;Name=BF9343_2512
CR626927	GenBank	mRNA	1987	3018	.	-	1	ID=BF9343_2512.t01;Parent=BF9343_2512
CR626927	GenBank	CDS	1987	3018	.	-	1	ID=BF9343_2512.p01;Parent=BF9343_2512.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2512,EnsemblGenomes-Tr:CAH08293,GOA:Q5LC73,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:Q5LC73;Name=BF9343_2512;Note=Similar to Edwardsiella ictaluri putative glycosyltransferase WbeIH SWALL:Q937X7 (EMBL:AY057452) (345 aa) fasta scores: E(): 3.3e-20%2C 30.33%25 id in 356 aa%2C and to Pyrococcus furiosus glycosyltransferase PF0307 SWALL:Q8U3Z3 (EMBL:AE010155) (336 aa) fasta scores: E(): 5e-11%2C 26.6%25 id in 342 aa;codon_start=1;old_locus_tag=BF2593;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH08293.1;transl_table=11;translation=length.343
CR626927	GenBank	exon	1987	3018	.	-	1	Parent=BF9343_2512.t01
CR626927	GenBank	gene	2990	4132	.	-	1	ID=BF9343_2513;Name=BF9343_2513
CR626927	GenBank	mRNA	2990	4132	.	-	1	ID=BF9343_2513.t01;Parent=BF9343_2513
CR626927	GenBank	CDS	2990	4132	.	-	1	ID=BF9343_2513.p01;Parent=BF9343_2513.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2513,EnsemblGenomes-Tr:CAH08294,GOA:Q5LC72,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:Q5LC72;Name=BF9343_2513;Note=Similar to Lactobacillus plantarum glycosyltransferase Cps1G or LP_1183 SWALL:CAD63696 (EMBL:AL935255) (376 aa) fasta scores: E(): 9.7e-15%2C 23.21%25 id in 379 aa%2C and to Clostridium perfringens probable lipopolysaccharide biosynthesis protein CPE0502 SWALL:Q8XN36 (EMBL:AP003187) (367 aa) fasta scores: E(): 3.5e-14%2C 25.82%25 id in 364 aa;codon_start=1;old_locus_tag=BF2594;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH08294.1;transl_table=11;translation=length.380
CR626927	GenBank	exon	2990	4132	.	-	1	Parent=BF9343_2513.t01
CR626927	GenBank	gene	4129	5226	.	-	1	ID=BF9343_2514;Name=BF9343_2514
CR626927	GenBank	mRNA	4129	5226	.	-	1	ID=BF9343_2514.t01;Parent=BF9343_2514
CR626927	GenBank	CDS	4129	5226	.	-	1	ID=BF9343_2514.p01;Parent=BF9343_2514.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2514,EnsemblGenomes-Tr:CAH08295,GOA:Q5LC71,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:Q5LC71;Name=BF9343_2514;Note=Similar to Yersinia enterocolitica WbcM protein SWALL:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 1.1e-50%2C 42.34%25 id in 359 aa%2C and to Erwinia amylovora amylovoran biosynthesis glycosyl transferase AmsD SWALL:AMSD_ERWAM (SWALL:Q46634) (351 aa) fasta scores: E(): 7.6e-30%2C 31.68%25 id in 363 aa;codon_start=1;old_locus_tag=BF2595;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH08295.1;transl_table=11;translation=length.365
CR626927	GenBank	exon	4129	5226	.	-	1	Parent=BF9343_2514.t01
CR626927	GenBank	gene	5219	6445	.	-	1	ID=BF9343_2515;Name=BF9343_2515
CR626927	GenBank	mRNA	5219	6445	.	-	1	ID=BF9343_2515.t01;Parent=BF9343_2515
CR626927	GenBank	CDS	5219	6445	.	-	1	ID=BF9343_2515.p01;Parent=BF9343_2515.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2515,EnsemblGenomes-Tr:CAH08296,UniProtKB/TrEMBL:Q5LC70;Name=BF9343_2515;Note=Similar to Escherichia coli putative O-antigen polymerase Wzy SWALL:O30626 (EMBL:AF013583) (413 aa) fasta scores: E(): 0.00029%2C 20.33%25 id in 423 aa%2C and to Escherichia coli putative colanic acid polymerase WcaD or B2056 SWALL:WCAD_ECOLI (SWALL:P71238) (405 aa) fasta scores: E(): 0.39%2C 25.58%25 id in 426 aa;codon_start=1;old_locus_tag=BF2596;product=putative LPS biosynthesis related polysaccharide polymerase;protein_id=CAH08296.1;transl_table=11;translation=length.408
CR626927	GenBank	exon	5219	6445	.	-	1	Parent=BF9343_2515.t01
CR626927	GenBank	gene	6480	7208	.	-	1	ID=BF9343_2516;Name=BF9343_2516
CR626927	GenBank	mRNA	6480	7208	.	-	1	ID=BF9343_2516.t01;Parent=BF9343_2516
CR626927	GenBank	CDS	6480	7208	.	-	1	ID=BF9343_2516.p01;Parent=BF9343_2516.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2516,EnsemblGenomes-Tr:CAH08297,GOA:Q5LC69,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q5LC69;Name=BF9343_2516;Note=Similar to Methanosarcina mazei glycosyltransferase involved in cell wall biogenesis MM0653 SWALL:Q8PZ41 (EMBL:AE013290) (248 aa) fasta scores: E(): 1.2e-25%2C 39.49%25 id in 238 aa%2C and to Escherichia coli putative colanic acid biosynthesis glycosyl transferase WcaE or B2055 SWALL:WCAE_ECOLI (SWALL:P71239) (248 aa) fasta scores: E(): 2.8e-14%2C 31%25 id in 229 aa;codon_start=1;old_locus_tag=BF2597;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH08297.1;transl_table=11;translation=length.242
CR626927	GenBank	exon	6480	7208	.	-	1	Parent=BF9343_2516.t01
CR626927	GenBank	gene	7215	8561	.	-	1	ID=BF9343_2517;Name=BF9343_2517
CR626927	GenBank	mRNA	7215	8561	.	-	1	ID=BF9343_2517.t01;Parent=BF9343_2517
CR626927	GenBank	CDS	7215	8561	.	-	1	ID=BF9343_2517.p01;Parent=BF9343_2517.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2517,EnsemblGenomes-Tr:CAH08298,GOA:Q5LC68,InterPro:IPR002797,UniProtKB/TrEMBL:Q5LC68;Name=BF9343_2517;Note=Similar to Escherichia coli%2C and Escherichia coli O157:H7 O antigen flippase Wzx or Z3201 or ECS2842 SWALL:O85337 (EMBL:AF061251) (463 aa) fasta scores: E(): 1.1e-23%2C 26.65%25 id in 409 aa%2C and to Salmonella typhi putative O-antigen transporter RfbX or STY2297 or T0785 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 4.9e-17%2C 25.92%25 id in 432 aa;codon_start=1;old_locus_tag=BF2598;product=putative LPS biosynthesis related polysaccharide transporter/flippase;protein_id=CAH08298.1;transl_table=11;translation=length.448
CR626927	GenBank	exon	7215	8561	.	-	1	Parent=BF9343_2517.t01
CR626927	GenBank	gene	8585	9481	.	-	1	ID=BF9343_2518;Name=BF9343_2518
CR626927	GenBank	mRNA	8585	9481	.	-	1	ID=BF9343_2518.t01;Parent=BF9343_2518
CR626927	GenBank	CDS	8585	9481	.	-	1	ID=BF9343_2518.p01;Parent=BF9343_2518.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2518,EnsemblGenomes-Tr:CAH08299,GOA:Q5LC67,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q5LC67;Name=BF9343_2518;Note=Similar to Clostridium acetobutylicum glycosyltransferase CAC2346 SWALL:Q97GM0 (EMBL:AE007735) (273 aa) fasta scores: E(): 8.8e-15%2C 28.83%25 id in 274 aa%2C and to Campylobacter jejuni putative galactosyltransferase SWALL:Q8KWR0 (EMBL:AF400669) (323 aa) fasta scores: E(): 1.8e-14%2C 29.83%25 id in 295 aa;codon_start=1;old_locus_tag=BF2599;product=putative LPS biosynthesis related glycosyltransferase;protein_id=CAH08299.1;transl_table=11;translation=length.298
CR626927	GenBank	exon	8585	9481	.	-	1	Parent=BF9343_2518.t01
CR626927	GenBank	gene	9474	10493	.	-	1	ID=BF9343_2519;Name=rfbE;locus_tag=BF9343_2519
CR626927	GenBank	mRNA	9474	10493	.	-	1	ID=BF9343_2519.t01;Parent=BF9343_2519
CR626927	GenBank	CDS	9474	10493	.	-	1	ID=BF9343_2519.p01;Parent=BF9343_2519.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2519,EnsemblGenomes-Tr:CAH08300,GOA:Q5LC66,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q5LC66;eC_number=5.1.3.-;Name=rfbE;Note=Similar to Salmonella typhi CDP-tyvelose-2-epimerase RfbE or STY2298 or T0784 SWALL:RFBE_SALTI (SWALL:P14169) (338 aa) fasta scores: E(): 4.6e-81%2C 61.24%25 id in 338 aa%2C and to Yersinia pseudotuberculosis CDP-tyvelose epimerase Tyv SWALL:Q56944 (EMBL:AF461769) (338 aa) fasta scores: E(): 9.6e-82%2C 59.17%25 id in 338 aa;codon_start=1;locus_tag=BF9343_2519;old_locus_tag=BF2600;product=DNTP-hexose dehydratase-epimerase;protein_id=CAH08300.1;transl_table=11;translation=length.339
CR626927	GenBank	exon	9474	10493	.	-	1	Parent=BF9343_2519.t01
CR626927	GenBank	gene	10501	11391	.	-	1	ID=BF9343_2520;Name=BF9343_2520
CR626927	GenBank	mRNA	10501	11391	.	-	1	ID=BF9343_2520.t01;Parent=BF9343_2520
CR626927	GenBank	CDS	10501	11391	.	-	1	ID=BF9343_2520.p01;Parent=BF9343_2520.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2520,EnsemblGenomes-Tr:CAH08301,GOA:Q5LC65,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q5LC65;Name=BF9343_2520;Note=Similar to Lactococcus lactis UDP-glucose 4-epimerase YcbD or ll0211 SWALL:Q9CIZ5 (EMBL:AE006259) (313 aa) fasta scores: E(): 1.9e-15%2C 27.5%25 id in 309 aa%2C and to Salmonella muenchen CDPp-abequose synthase RfbJ SWALL:RFBJ_SALMU (SWALL:Q00329) (293 aa) fasta scores: E(): 6.9e-11%2C 25.33%25 id in 300 aa;codon_start=1;old_locus_tag=BF2601;product=putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase;protein_id=CAH08301.1;transl_table=11;translation=length.296
CR626927	GenBank	exon	10501	11391	.	-	1	Parent=BF9343_2520.t01
CR626927	GenBank	gene	11388	12467	.	-	1	ID=BF9343_2521;Name=BF9343_2521
CR626927	GenBank	mRNA	11388	12467	.	-	1	ID=BF9343_2521.t01;Parent=BF9343_2521
CR626927	GenBank	CDS	11388	12467	.	-	1	ID=BF9343_2521.p01;Parent=BF9343_2521.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2521,EnsemblGenomes-Tr:CAH08302,GOA:Q5LC64,InterPro:IPR001509,InterPro:IPR013445,InterPro:IPR016040,UniProtKB/TrEMBL:Q5LC64;Name=BF9343_2521;Note=Similar to Salmonella typhimurium CDP-glucose 4%2C6-dehydratase RfbG or STM2091 SWALL:RFBG_SALTY (SWALL:P26397) (359 aa) fasta scores: E(): 1.1e-69%2C 51.28%25 id in 351 aa%2C and to Yersinia pseudotuberculosis CDP-D-glucose-4%2C6-dehydratase AscB or DdhB SWALL:Q57329 (EMBL:L33181) (357 aa) fasta scores: E(): 1.2e-70%2C 51.41%25 id in 354 aa;codon_start=1;old_locus_tag=BF2602;product=putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase;protein_id=CAH08302.1;transl_table=11;translation=length.359
CR626927	GenBank	exon	11388	12467	.	-	1	Parent=BF9343_2521.t01
CR626927	GenBank	gene	12472	13248	.	-	1	ID=BF9343_2522;Name=BF9343_2522
CR626927	GenBank	mRNA	12472	13248	.	-	1	ID=BF9343_2522.t01;Parent=BF9343_2522
CR626927	GenBank	CDS	12472	13248	.	-	1	ID=BF9343_2522.p01;Parent=BF9343_2522.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2522,EnsemblGenomes-Tr:CAH08303,GOA:Q5LC63,InterPro:IPR005835,InterPro:IPR013446,InterPro:IPR029044,UniProtKB/TrEMBL:Q5LC63;Name=BF9343_2522;Note=Similar to Salmonella typhimurium glucose-1-phosphate cytidylyltransferase RfbF or STM2092 SWALL:RFBF_SALTY (SWALL:P26396) (257 aa) fasta scores: E(): 7.9e-59%2C 58.3%25 id in 259 aa%2C and to Bacteroides thetaiotaomicron glucose-1-phosphate cytidylyltransferase BT1351 SWALL:AAO76458 (EMBL:AE016931) (257 aa) fasta scores: E(): 5.6e-76%2C 70.27%25 id in 259 aa;codon_start=1;old_locus_tag=BF2603;product=putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase;protein_id=CAH08303.1;transl_table=11;translation=length.258
CR626927	GenBank	exon	12472	13248	.	-	1	Parent=BF9343_2522.t01
CR626927	GenBank	gene	13245	14582	.	-	1	ID=BF9343_2523;Name=BF9343_2523
CR626927	GenBank	mRNA	13245	14582	.	-	1	ID=BF9343_2523.t01;Parent=BF9343_2523
CR626927	GenBank	CDS	13245	14582	.	-	1	ID=BF9343_2523.p01;Parent=BF9343_2523.t01;Dbxref=EnsemblGenomes-Gn:BF9343_2523,EnsemblGenomes-Tr:CAH08304,GOA:Q5LC62,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q5LC62;Name=BF9343_2523;Note=Similar to Yersinia pseudotuberculosis CDP-4-keto-6-deoxy-D-glucose-3-dehydrase DdhC SWALL:Q57323 (EMBL:AF461769) (437 aa) fasta scores: E(): 6.2e-98%2C 56.43%25 id in 443 aa%2C and to Salmonella typhimurium lipopolysaccharide biosynthesis protein RfbH or STM2090 SWALL:RFBH_SALTY (SWALL:P26398) (437 aa) fasta scores: E(): 3.4e-94%2C 54.92%25 id in 437 aa;codon_start=1;old_locus_tag=BF2604;product=putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase;protein_id=CAH08304.1;transl_table=11;translation=length.445
CR626927	GenBank	exon	13245	14582	.	-	1	Parent=BF9343_2523.t01