##gff-version 3
##sequence-region NC_016776 1 10147
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	10147	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	1446	.	+	1	ID=BF638R_RS21575;Name=BF638R_RS21575;old_locus_tag=BF638R_4457
NC_016776	GenBank	mRNA	1	1446	.	+	1	ID=BF638R_RS21575.t01;Parent=BF638R_RS21575
NC_016776	GenBank	CDS	1	1446	.	+	1	ID=BF638R_RS21575.p01;Parent=BF638R_RS21575.t01;Name=BF638R_RS21575;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005803862.1;old_locus_tag=BF638R_4457;product=lipopolysaccharide biosynthesis protein;protein_id=WP_014299635.1;transl_table=11;translation=length.481
NC_016776	GenBank	exon	1	1446	.	+	1	Parent=BF638R_RS21575.t01
NC_016776	GenBank	gene	1450	2637	.	+	1	ID=BF638R_RS21580;Name=BF638R_RS21580;old_locus_tag=BF638R_4458
NC_016776	GenBank	mRNA	1450	2637	.	+	1	ID=BF638R_RS21580.t01;Parent=BF638R_RS21580
NC_016776	GenBank	CDS	1450	2637	.	+	1	ID=BF638R_RS21580.p01;Parent=BF638R_RS21580.t01;Name=BF638R_RS21580;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005803861.1;old_locus_tag=BF638R_4458;product=glycosyltransferase;protein_id=WP_008661647.1;transl_table=11;translation=length.395
NC_016776	GenBank	exon	1450	2637	.	+	1	Parent=BF638R_RS21580.t01
NC_016776	GenBank	gene	2647	3657	.	+	1	ID=BF638R_RS21585;Name=BF638R_RS21585;old_locus_tag=BF638R_4459
NC_016776	GenBank	mRNA	2647	3657	.	+	1	ID=BF638R_RS21585.t01;Parent=BF638R_RS21585
NC_016776	GenBank	CDS	2647	3657	.	+	1	ID=BF638R_RS21585.p01;Parent=BF638R_RS21585.t01;Name=BF638R_RS21585;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005797203.1;old_locus_tag=BF638R_4459;product=glycosyltransferase;protein_id=WP_008661648.1;transl_table=11;translation=length.336
NC_016776	GenBank	exon	2647	3657	.	+	1	Parent=BF638R_RS21585.t01
NC_016776	GenBank	gene	3657	4856	.	+	1	ID=BF638R_RS21590;Name=BF638R_RS21590;old_locus_tag=BF638R_4460
NC_016776	GenBank	mRNA	3657	4856	.	+	1	ID=BF638R_RS21590.t01;Parent=BF638R_RS21590
NC_016776	GenBank	CDS	3657	4856	.	+	1	ID=BF638R_RS21590.p01;Parent=BF638R_RS21590.t01;Name=BF638R_RS21590;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005811820.1;old_locus_tag=BF638R_4460;product=glycosyltransferase family 4 protein;protein_id=WP_008661650.1;transl_table=11;translation=length.399
NC_016776	GenBank	exon	3657	4856	.	+	1	Parent=BF638R_RS21590.t01
NC_016776	GenBank	gene	4925	5572	.	+	1	ID=BF638R_RS21595;Name=BF638R_RS21595;old_locus_tag=BF638R_4461
NC_016776	GenBank	mRNA	4925	5572	.	+	1	ID=BF638R_RS21595.t01;Parent=BF638R_RS21595
NC_016776	GenBank	CDS	4925	5572	.	+	1	ID=BF638R_RS21595.p01;Parent=BF638R_RS21595.t01;Name=BF638R_RS21595;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005797199.1;old_locus_tag=BF638R_4461;product=hypothetical protein;protein_id=WP_005791920.1;transl_table=11;translation=length.215
NC_016776	GenBank	exon	4925	5572	.	+	1	Parent=BF638R_RS21595.t01
NC_016776	GenBank	gene	5624	6754	.	-	1	ID=BF638R_RS21600;Name=wecB;locus_tag=BF638R_RS21600;old_locus_tag=BF638R_4462
NC_016776	GenBank	mRNA	5624	6754	.	-	1	ID=BF638R_RS21600.t01;Parent=BF638R_RS21600
NC_016776	GenBank	CDS	5624	6754	.	-	1	ID=BF638R_RS21600.p01;Parent=BF638R_RS21600.t01;eC_number=5.1.3.14;Name=wecB;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005791919.1;locus_tag=BF638R_RS21600;old_locus_tag=BF638R_4462;product=UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing);protein_id=WP_005791919.1;transl_table=11;translation=length.376
NC_016776	GenBank	exon	5624	6754	.	-	1	Parent=BF638R_RS21600.t01
NC_016776	GenBank	gene	6809	8011	.	-	1	ID=BF638R_RS21605;Name=wecC;locus_tag=BF638R_RS21605;old_locus_tag=BF638R_4463
NC_016776	GenBank	mRNA	6809	8011	.	-	1	ID=BF638R_RS21605.t01;Parent=BF638R_RS21605
NC_016776	GenBank	CDS	6809	8011	.	-	1	ID=BF638R_RS21605.p01;Parent=BF638R_RS21605.t01;eC_number=1.1.1.336;Name=wecC;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005791918.1;locus_tag=BF638R_RS21605;old_locus_tag=BF638R_4463;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_008661652.1;transl_table=11;translation=length.400
NC_016776	GenBank	exon	6809	8011	.	-	1	Parent=BF638R_RS21605.t01
NC_016776	GenBank	gene	8116	9381	.	+	1	ID=BF638R_RS21610;Name=BF638R_RS21610;old_locus_tag=BF638R_4464
NC_016776	GenBank	mRNA	8116	9381	.	+	1	ID=BF638R_RS21610.t01;Parent=BF638R_RS21610
NC_016776	GenBank	CDS	8116	9381	.	+	1	ID=BF638R_RS21610.p01;Parent=BF638R_RS21610.t01;Name=BF638R_RS21610;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005797195.1;old_locus_tag=BF638R_4464;product=glycosyltransferase;protein_id=WP_008661654.1;transl_table=11;translation=length.421
NC_016776	GenBank	exon	8116	9381	.	+	1	Parent=BF638R_RS21610.t01
NC_016776	GenBank	gene	9374	10147	.	+	1	ID=BF638R_RS21615;Name=BF638R_RS21615;old_locus_tag=BF638R_4465
NC_016776	GenBank	mRNA	9374	10147	.	+	1	ID=BF638R_RS21615.t01;Parent=BF638R_RS21615
NC_016776	GenBank	CDS	9374	10147	.	+	1	ID=BF638R_RS21615.p01;Parent=BF638R_RS21615.t01;Name=BF638R_RS21615;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010993801.1;old_locus_tag=BF638R_4465;product=glycosyltransferase;protein_id=WP_005803856.1;transl_table=11;translation=length.257
NC_016776	GenBank	exon	9374	10147	.	+	1	Parent=BF638R_RS21615.t01
NC_016776	GenBank	gene	10081	10147	.	-	1	ID=BF638R_RS21620;Name=BF638R_RS21620;old_locus_tag=BF638R_4466
NC_016776	GenBank	mRNA	10081	10147	.	-	1	ID=BF638R_RS21620.t01;Parent=BF638R_RS21620
NC_016776	GenBank	CDS	10081	10147	.	-	1	ID=BF638R_RS21620.p01;Parent=BF638R_RS21620.t01;Name=BF638R_RS21620;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005814086.1;old_locus_tag=BF638R_4466;product=NAD-dependent deacylase;protein_id=WP_005791915.1;transl_table=11;translation=length.236
NC_016776	GenBank	exon	10081	10147	.	-	1	Parent=BF638R_RS21620.t01