##gff-version 3
##sequence-region NC_016776 1 15180
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	15180	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	717	.	-	1	ID=BF638R_RS16650;Name=BF638R_RS16650;old_locus_tag=BF638R_3472
NC_016776	GenBank	mRNA	1	717	.	-	1	ID=BF638R_RS16650.t01;Parent=BF638R_RS16650
NC_016776	GenBank	CDS	1	717	.	-	1	ID=BF638R_RS16650.p01;Parent=BF638R_RS16650.t01;Name=BF638R_RS16650;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009292664.1;old_locus_tag=BF638R_3472;product=capsular polysaccharide biosynthesis protein;protein_id=WP_014299315.1;transl_table=11;translation=length.238
NC_016776	GenBank	exon	1	717	.	-	1	Parent=BF638R_RS16650.t01
NC_016776	GenBank	gene	714	1256	.	-	1	ID=BF638R_RS16655;Name=rfbC;locus_tag=BF638R_RS16655;old_locus_tag=BF638R_3473
NC_016776	GenBank	mRNA	714	1256	.	-	1	ID=BF638R_RS16655.t01;Parent=BF638R_RS16655
NC_016776	GenBank	CDS	714	1256	.	-	1	ID=BF638R_RS16655.p01;Parent=BF638R_RS16655.t01;eC_number=5.1.3.13;Name=rfbC;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005821576.1;locus_tag=BF638R_RS16655;old_locus_tag=BF638R_3473;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_005817306.1;transl_table=11;translation=length.180
NC_016776	GenBank	exon	714	1256	.	-	1	Parent=BF638R_RS16655.t01
NC_016776	GenBank	gene	1253	2140	.	-	1	ID=BF638R_RS16660;Name=rfbA;locus_tag=BF638R_RS16660;old_locus_tag=BF638R_3474
NC_016776	GenBank	mRNA	1253	2140	.	-	1	ID=BF638R_RS16660.t01;Parent=BF638R_RS16660
NC_016776	GenBank	CDS	1253	2140	.	-	1	ID=BF638R_RS16660.p01;Parent=BF638R_RS16660.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004325813.1;locus_tag=BF638R_RS16660;old_locus_tag=BF638R_3474;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_014299316.1;transl_table=11;translation=length.295
NC_016776	GenBank	exon	1253	2140	.	-	1	Parent=BF638R_RS16660.t01
NC_016776	GenBank	gene	2154	2933	.	-	1	ID=BF638R_RS16665;Name=BF638R_RS16665;old_locus_tag=BF638R_3475
NC_016776	GenBank	mRNA	2154	2933	.	-	1	ID=BF638R_RS16665.t01;Parent=BF638R_RS16665
NC_016776	GenBank	CDS	2154	2933	.	-	1	ID=BF638R_RS16665.p01;Parent=BF638R_RS16665.t01;Name=BF638R_RS16665;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008657387.1;old_locus_tag=BF638R_3475;product=glycosyltransferase;protein_id=WP_014299317.1;transl_table=11;translation=length.259
NC_016776	GenBank	exon	2154	2933	.	-	1	Parent=BF638R_RS16665.t01
NC_016776	GenBank	gene	2894	3622	.	-	1	ID=BF638R_RS16670;Name=BF638R_RS16670;old_locus_tag=BF638R_3476
NC_016776	GenBank	mRNA	2894	3622	.	-	1	ID=BF638R_RS16670.t01;Parent=BF638R_RS16670
NC_016776	GenBank	CDS	2894	3622	.	-	1	ID=BF638R_RS16670.p01;Parent=BF638R_RS16670.t01;Name=BF638R_RS16670;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008657389.1;old_locus_tag=BF638R_3476;product=glycosyltransferase;protein_id=WP_008657389.1;transl_table=11;translation=length.242
NC_016776	GenBank	exon	2894	3622	.	-	1	Parent=BF638R_RS16670.t01
NC_016776	GenBank	gene	3619	4662	.	-	1	ID=BF638R_RS16675;Name=BF638R_RS16675;old_locus_tag=BF638R_3477
NC_016776	GenBank	mRNA	3619	4662	.	-	1	ID=BF638R_RS16675.t01;Parent=BF638R_RS16675
NC_016776	GenBank	CDS	3619	4662	.	-	1	ID=BF638R_RS16675.p01;Parent=BF638R_RS16675.t01;Name=BF638R_RS16675;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014299318.1;old_locus_tag=BF638R_3477;product=EpsG family protein;protein_id=WP_014299318.1;transl_table=11;translation=length.347
NC_016776	GenBank	exon	3619	4662	.	-	1	Parent=BF638R_RS16675.t01
NC_016776	GenBank	gene	4673	5785	.	-	1	ID=BF638R_RS16680;Name=BF638R_RS16680;old_locus_tag=BF638R_3478
NC_016776	GenBank	mRNA	4673	5785	.	-	1	ID=BF638R_RS16680.t01;Parent=BF638R_RS16680
NC_016776	GenBank	CDS	4673	5785	.	-	1	ID=BF638R_RS16680.p01;Parent=BF638R_RS16680.t01;Name=BF638R_RS16680;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008657393.1;old_locus_tag=BF638R_3478;product=glycosyltransferase family 4 protein;protein_id=WP_014299319.1;transl_table=11;translation=length.370
NC_016776	GenBank	exon	4673	5785	.	-	1	Parent=BF638R_RS16680.t01
NC_016776	GenBank	gene	5849	6607	.	-	1	ID=BF638R_RS16685;Name=BF638R_RS16685;old_locus_tag=BF638R_3479
NC_016776	GenBank	mRNA	5849	6607	.	-	1	ID=BF638R_RS16685.t01;Parent=BF638R_RS16685
NC_016776	GenBank	CDS	5849	6607	.	-	1	ID=BF638R_RS16685.p01;Parent=BF638R_RS16685.t01;Name=BF638R_RS16685;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009412663.1;old_locus_tag=BF638R_3479;product=glycosyltransferase;protein_id=WP_032563521.1;transl_table=11;translation=length.252
NC_016776	GenBank	exon	5849	6607	.	-	1	Parent=BF638R_RS16685.t01
NC_016776	GenBank	gene	6658	7566	.	-	1	ID=BF638R_RS16690;Name=BF638R_RS16690;old_locus_tag=BF638R_3480
NC_016776	GenBank	mRNA	6658	7566	.	-	1	ID=BF638R_RS16690.t01;Parent=BF638R_RS16690
NC_016776	GenBank	CDS	6658	7566	.	-	1	ID=BF638R_RS16690.p01;Parent=BF638R_RS16690.t01;Name=BF638R_RS16690;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008769896.1;old_locus_tag=BF638R_3480;product=glycosyltransferase family 2 protein;protein_id=WP_014299321.1;transl_table=11;translation=length.302
NC_016776	GenBank	exon	6658	7566	.	-	1	Parent=BF638R_RS16690.t01
NC_016776	GenBank	gene	7580	8908	.	-	1	ID=BF638R_RS16695;Name=BF638R_RS16695;old_locus_tag=BF638R_3481
NC_016776	GenBank	mRNA	7580	8908	.	-	1	ID=BF638R_RS16695.t01;Parent=BF638R_RS16695
NC_016776	GenBank	CDS	7580	8908	.	-	1	ID=BF638R_RS16695.p01;Parent=BF638R_RS16695.t01;Name=BF638R_RS16695;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BF638R_3481;product=MATE family efflux transporter;protein_id=WP_050551121.1;transl_table=11;translation=length.442
NC_016776	GenBank	exon	7580	8908	.	-	1	Parent=BF638R_RS16695.t01
NC_016776	GenBank	gene	8908	9918	.	-	1	ID=BF638R_RS16700;Name=BF638R_RS16700;old_locus_tag=BF638R_3482
NC_016776	GenBank	mRNA	8908	9918	.	-	1	ID=BF638R_RS16700.t01;Parent=BF638R_RS16700
NC_016776	GenBank	CDS	8908	9918	.	-	1	ID=BF638R_RS16700.p01;Parent=BF638R_RS16700.t01;Name=BF638R_RS16700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009292651.1;old_locus_tag=BF638R_3482;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_014299323.1;transl_table=11;translation=length.336
NC_016776	GenBank	exon	8908	9918	.	-	1	Parent=BF638R_RS16700.t01
NC_016776	GenBank	gene	9921	10820	.	-	1	ID=BF638R_RS16705;Name=BF638R_RS16705;old_locus_tag=BF638R_3483
NC_016776	GenBank	mRNA	9921	10820	.	-	1	ID=BF638R_RS16705.t01;Parent=BF638R_RS16705
NC_016776	GenBank	CDS	9921	10820	.	-	1	ID=BF638R_RS16705.p01;Parent=BF638R_RS16705.t01;Name=BF638R_RS16705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009292650.1;old_locus_tag=BF638R_3483;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_009292650.1;transl_table=11;translation=length.299
NC_016776	GenBank	exon	9921	10820	.	-	1	Parent=BF638R_RS16705.t01
NC_016776	GenBank	gene	10822	11901	.	-	1	ID=BF638R_RS16710;Name=rfbG;locus_tag=BF638R_RS16710;old_locus_tag=BF638R_3484
NC_016776	GenBank	mRNA	10822	11901	.	-	1	ID=BF638R_RS16710.t01;Parent=BF638R_RS16710
NC_016776	GenBank	CDS	10822	11901	.	-	1	ID=BF638R_RS16710.p01;Parent=BF638R_RS16710.t01;eC_number=4.2.1.45;Name=rfbG;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014299015.1;locus_tag=BF638R_RS16710;old_locus_tag=BF638R_3484;product=CDP-glucose 4%2C6-dehydratase;protein_id=WP_009292649.1;transl_table=11;translation=length.359
NC_016776	GenBank	exon	10822	11901	.	-	1	Parent=BF638R_RS16710.t01
NC_016776	GenBank	gene	11907	12683	.	-	1	ID=BF638R_RS16715;Name=rfbF;locus_tag=BF638R_RS16715;old_locus_tag=BF638R_3485
NC_016776	GenBank	mRNA	11907	12683	.	-	1	ID=BF638R_RS16715.t01;Parent=BF638R_RS16715
NC_016776	GenBank	CDS	11907	12683	.	-	1	ID=BF638R_RS16715.p01;Parent=BF638R_RS16715.t01;eC_number=2.7.7.33;Name=rfbF;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005806514.1;locus_tag=BF638R_RS16715;old_locus_tag=BF638R_3485;product=glucose-1-phosphate cytidylyltransferase;protein_id=WP_005781149.1;transl_table=11;translation=length.258
NC_016776	GenBank	exon	11907	12683	.	-	1	Parent=BF638R_RS16715.t01
NC_016776	GenBank	gene	12721	14064	.	-	1	ID=BF638R_RS16720;Name=rfbH;locus_tag=BF638R_RS16720;old_locus_tag=BF638R_3486
NC_016776	GenBank	mRNA	12721	14064	.	-	1	ID=BF638R_RS16720.t01;Parent=BF638R_RS16720
NC_016776	GenBank	CDS	12721	14064	.	-	1	ID=BF638R_RS16720.p01;Parent=BF638R_RS16720.t01;Name=rfbH;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790531.1;locus_tag=BF638R_RS16720;old_locus_tag=BF638R_3486;product=lipopolysaccharide biosynthesis protein RfbH;protein_id=WP_009292648.1;transl_table=11;translation=length.447
NC_016776	GenBank	exon	12721	14064	.	-	1	Parent=BF638R_RS16720.t01
NC_016776	GenBank	gene	14083	15180	.	-	1	ID=BF638R_RS16725;Name=BF638R_RS16725;old_locus_tag=BF638R_3487
NC_016776	GenBank	mRNA	14083	15180	.	-	1	ID=BF638R_RS16725.t01;Parent=BF638R_RS16725
NC_016776	GenBank	CDS	14083	15180	.	-	1	ID=BF638R_RS16725.p01;Parent=BF638R_RS16725.t01;Name=BF638R_RS16725;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790532.1;old_locus_tag=BF638R_3487;product=undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase;protein_id=WP_005790532.1;transl_table=11;translation=length.365
NC_016776	GenBank	exon	14083	15180	.	-	1	Parent=BF638R_RS16725.t01