##gff-version 3
##sequence-region NC_016776 1 15720
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	15720	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	954	.	-	1	ID=BF638R_RS12350;Name=BF638R_RS12350;old_locus_tag=BF638R_2585
NC_016776	GenBank	mRNA	1	954	.	-	1	ID=BF638R_RS12350.t01;Parent=BF638R_RS12350
NC_016776	GenBank	CDS	1	954	.	-	1	ID=BF638R_RS12350.p01;Parent=BF638R_RS12350.t01;Name=BF638R_RS12350;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005793469.1;old_locus_tag=BF638R_2585;product=glycosyltransferase family 4 protein;protein_id=WP_014299007.1;transl_table=11;translation=length.317
NC_016776	GenBank	exon	1	954	.	-	1	Parent=BF638R_RS12350.t01
NC_016776	GenBank	gene	1072	1968	.	-	1	ID=BF638R_RS12355;Name=BF638R_RS12355;old_locus_tag=BF638R_2586
NC_016776	GenBank	mRNA	1072	1968	.	-	1	ID=BF638R_RS12355.t01;Parent=BF638R_RS12355
NC_016776	GenBank	CDS	1072	1968	.	-	1	ID=BF638R_RS12355.p01;Parent=BF638R_RS12355.t01;Name=BF638R_RS12355;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005806489.1;old_locus_tag=BF638R_2586;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_014299008.1;transl_table=11;translation=length.298
NC_016776	GenBank	exon	1072	1968	.	-	1	Parent=BF638R_RS12355.t01
NC_016776	GenBank	gene	1977	2729	.	-	1	ID=BF638R_RS12360;Name=BF638R_RS12360;old_locus_tag=BF638R_2587
NC_016776	GenBank	mRNA	1977	2729	.	-	1	ID=BF638R_RS12360.t01;Parent=BF638R_RS12360
NC_016776	GenBank	CDS	1977	2729	.	-	1	ID=BF638R_RS12360.p01;Parent=BF638R_RS12360.t01;Name=BF638R_RS12360;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008660478.1;old_locus_tag=BF638R_2587;product=glycosyltransferase;protein_id=WP_005793465.1;transl_table=11;translation=length.250
NC_016776	GenBank	exon	1977	2729	.	-	1	Parent=BF638R_RS12360.t01
NC_016776	GenBank	gene	2726	3805	.	-	1	ID=BF638R_RS12365;Name=BF638R_RS12365;old_locus_tag=BF638R_2588
NC_016776	GenBank	mRNA	2726	3805	.	-	1	ID=BF638R_RS12365.t01;Parent=BF638R_RS12365
NC_016776	GenBank	CDS	2726	3805	.	-	1	ID=BF638R_RS12365.p01;Parent=BF638R_RS12365.t01;Name=BF638R_RS12365;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008660480.1;old_locus_tag=BF638R_2588;product=glycosyltransferase;protein_id=WP_139104812.1;transl_table=11;translation=length.359
NC_016776	GenBank	exon	2726	3805	.	-	1	Parent=BF638R_RS12365.t01
NC_016776	GenBank	gene	3809	4939	.	-	1	ID=BF638R_RS12370;Name=BF638R_RS12370;old_locus_tag=BF638R_2589
NC_016776	GenBank	mRNA	3809	4939	.	-	1	ID=BF638R_RS12370.t01;Parent=BF638R_RS12370
NC_016776	GenBank	CDS	3809	4939	.	-	1	ID=BF638R_RS12370.p01;Parent=BF638R_RS12370.t01;Name=BF638R_RS12370;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=BF638R_2589;product=oligosaccharide repeat unit polymerase;protein_id=WP_144011113.1;transl_table=11;translation=length.376
NC_016776	GenBank	exon	3809	4939	.	-	1	Parent=BF638R_RS12370.t01
NC_016776	GenBank	gene	5071	6144	.	-	1	ID=BF638R_RS12375;Name=BF638R_RS12375;old_locus_tag=BF638R_2590
NC_016776	GenBank	mRNA	5071	6144	.	-	1	ID=BF638R_RS12375.t01;Parent=BF638R_RS12375
NC_016776	GenBank	CDS	5071	6144	.	-	1	ID=BF638R_RS12375.p01;Parent=BF638R_RS12375.t01;Name=BF638R_RS12375;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012744.1%2CHMM:NF024831.1;old_locus_tag=BF638R_2590;product=glycosyltransferase;protein_id=WP_014299011.1;transl_table=11;translation=length.357
NC_016776	GenBank	exon	5071	6144	.	-	1	Parent=BF638R_RS12375.t01
NC_016776	GenBank	gene	6153	7571	.	-	1	ID=BF638R_RS12380;Name=BF638R_RS12380;old_locus_tag=BF638R_2591
NC_016776	GenBank	mRNA	6153	7571	.	-	1	ID=BF638R_RS12380.t01;Parent=BF638R_RS12380
NC_016776	GenBank	CDS	6153	7571	.	-	1	ID=BF638R_RS12380.p01;Parent=BF638R_RS12380.t01;Name=BF638R_RS12380;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF024832.1;old_locus_tag=BF638R_2591;product=lipopolysaccharide biosynthesis protein;protein_id=WP_014299012.1;transl_table=11;translation=length.472
NC_016776	GenBank	exon	6153	7571	.	-	1	Parent=BF638R_RS12380.t01
NC_016776	GenBank	gene	7575	8576	.	-	1	ID=BF638R_RS12385;Name=BF638R_RS12385;old_locus_tag=BF638R_2592
NC_016776	GenBank	mRNA	7575	8576	.	-	1	ID=BF638R_RS12385.t01;Parent=BF638R_RS12385
NC_016776	GenBank	CDS	7575	8576	.	-	1	ID=BF638R_RS12385.p01;Parent=BF638R_RS12385.t01;Name=BF638R_RS12385;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF013048.1;old_locus_tag=BF638R_2592;product=putative transferase;protein_id=WP_014299013.1;transl_table=11;translation=length.333
NC_016776	GenBank	exon	7575	8576	.	-	1	Parent=BF638R_RS12385.t01
NC_016776	GenBank	gene	8589	9452	.	-	1	ID=BF638R_RS12390;Name=BF638R_RS12390;old_locus_tag=BF638R_2593
NC_016776	GenBank	mRNA	8589	9452	.	-	1	ID=BF638R_RS12390.t01;Parent=BF638R_RS12390
NC_016776	GenBank	CDS	8589	9452	.	-	1	ID=BF638R_RS12390.p01;Parent=BF638R_RS12390.t01;Name=BF638R_RS12390;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012745.1;old_locus_tag=BF638R_2593;product=glycosyltransferase;protein_id=WP_032574388.1;transl_table=11;translation=length.287
NC_016776	GenBank	exon	8589	9452	.	-	1	Parent=BF638R_RS12390.t01
NC_016776	GenBank	gene	9838	11574	.	-	1	ID=BF638R_RS12395;Name=BF638R_RS12395;old_locus_tag=BF638R_2594
NC_016776	GenBank	mRNA	9838	11574	.	-	1	ID=BF638R_RS12395.t01;Parent=BF638R_RS12395
NC_016776	GenBank	CDS	9838	11574	.	-	1	ID=BF638R_RS12395.p01;Parent=BF638R_RS12395.t01;Name=BF638R_RS12395;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008657400.1;old_locus_tag=BF638R_2594;product=thiamine pyrophosphate-binding protein;protein_id=WP_008657400.1;transl_table=11;translation=length.578
NC_016776	GenBank	exon	9838	11574	.	-	1	Parent=BF638R_RS12395.t01
NC_016776	GenBank	gene	11561	12481	.	-	1	ID=BF638R_RS12400;Name=BF638R_RS12400;old_locus_tag=BF638R_2595
NC_016776	GenBank	mRNA	11561	12481	.	-	1	ID=BF638R_RS12400.t01;Parent=BF638R_RS12400
NC_016776	GenBank	CDS	11561	12481	.	-	1	ID=BF638R_RS12400.p01;Parent=BF638R_RS12400.t01;Name=BF638R_RS12400;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008657401.1;old_locus_tag=BF638R_2595;product=NAD(P)-dependent oxidoreductase;protein_id=WP_005793446.1;transl_table=11;translation=length.306
NC_016776	GenBank	exon	11561	12481	.	-	1	Parent=BF638R_RS12400.t01
NC_016776	GenBank	gene	12478	13557	.	-	1	ID=BF638R_RS12405;Name=rfbG;locus_tag=BF638R_RS12405;old_locus_tag=BF638R_2596
NC_016776	GenBank	mRNA	12478	13557	.	-	1	ID=BF638R_RS12405.t01;Parent=BF638R_RS12405
NC_016776	GenBank	CDS	12478	13557	.	-	1	ID=BF638R_RS12405.p01;Parent=BF638R_RS12405.t01;eC_number=4.2.1.45;Name=rfbG;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014299015.1;locus_tag=BF638R_RS12405;old_locus_tag=BF638R_2596;product=CDP-glucose 4%2C6-dehydratase;protein_id=WP_014299015.1;transl_table=11;translation=length.359
NC_016776	GenBank	exon	12478	13557	.	-	1	Parent=BF638R_RS12405.t01
NC_016776	GenBank	gene	13563	14339	.	-	1	ID=BF638R_RS12410;Name=rfbF;locus_tag=BF638R_RS12410;old_locus_tag=BF638R_2597
NC_016776	GenBank	mRNA	13563	14339	.	-	1	ID=BF638R_RS12410.t01;Parent=BF638R_RS12410
NC_016776	GenBank	CDS	13563	14339	.	-	1	ID=BF638R_RS12410.p01;Parent=BF638R_RS12410.t01;eC_number=2.7.7.33;Name=rfbF;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005806514.1;locus_tag=BF638R_RS12410;old_locus_tag=BF638R_2597;product=glucose-1-phosphate cytidylyltransferase;protein_id=WP_005781149.1;transl_table=11;translation=length.258
NC_016776	GenBank	exon	13563	14339	.	-	1	Parent=BF638R_RS12410.t01
NC_016776	GenBank	gene	14377	15720	.	-	1	ID=BF638R_RS12415;Name=rfbH;locus_tag=BF638R_RS12415;old_locus_tag=BF638R_2598
NC_016776	GenBank	mRNA	14377	15720	.	-	1	ID=BF638R_RS12415.t01;Parent=BF638R_RS12415
NC_016776	GenBank	CDS	14377	15720	.	-	1	ID=BF638R_RS12415.p01;Parent=BF638R_RS12415.t01;Name=rfbH;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005790531.1;locus_tag=BF638R_RS12415;old_locus_tag=BF638R_2598;product=lipopolysaccharide biosynthesis protein RfbH;protein_id=WP_005793443.1;transl_table=11;translation=length.447
NC_016776	GenBank	exon	14377	15720	.	-	1	Parent=BF638R_RS12415.t01