##gff-version 3
##sequence-region NC_016776 1 22237
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis 638R
# Note Bacteroides fragilis 638R, complete sequence.
# date 17-FEB-2020
NC_016776	GenBank	region	1	22237	.	+	1	ID=NC_016776;Dbxref=BioProject:PRJNA224116,taxon:862962;Name=NC_016776;Note=Bacteroides fragilis 638R%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,439 CDSs (total) :: 4,346 Genes (coding) :: 4,241 CDSs (with protein) :: 4,241 Genes (RNA) :: 93 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;comment1=REFSEQ INFORMATION: The reference sequence was derived from FQ312004. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Data release policy http://www.sanger.ac.uk/legal/#t_2 DNA source: unknown. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/17/2020 18:16:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C439 CDSs (total) :: 4%2C346 Genes (coding) :: 4%2C241 CDSs (with protein) :: 4%2C241 Genes (RNA) :: 93 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 73 ncRNAs :: 2 Pseudo Genes (total) :: 105 CDSs (without protein) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 50 of 105 Pseudo Genes (incomplete) :: 48 of 105 Pseudo Genes (internal stop) :: 34 of 105 Pseudo Genes (multiple problems) :: 24 of 105 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ;date=17-FEB-2020;mol_type=genomic DNA;organism=Bacteroides fragilis 638R;strain=638R
NC_016776	GenBank	gene	1	879	.	+	1	ID=BF638R_RS06690;Name=BF638R_RS06690;old_locus_tag=BF638R_1435.2
NC_016776	GenBank	mRNA	1	879	.	+	1	ID=BF638R_RS06690.t01;Parent=BF638R_RS06690
NC_016776	GenBank	CDS	1	879	.	+	1	ID=BF638R_RS06690.p01;Parent=BF638R_RS06690.t01;Name=BF638R_RS06690;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298514.1;old_locus_tag=BF638R_1435.2;product=WxcM-like domain-containing protein;protein_id=WP_014298514.1;transl_table=11;translation=length.292
NC_016776	GenBank	exon	1	879	.	+	1	Parent=BF638R_RS06690.t01
NC_016776	GenBank	gene	908	1369	.	+	1	ID=BF638R_RS06695;Name=BF638R_RS06695;old_locus_tag=BF638R_1437
NC_016776	GenBank	mRNA	908	1369	.	+	1	ID=BF638R_RS06695.t01;Parent=BF638R_RS06695
NC_016776	GenBank	CDS	908	1369	.	+	1	ID=BF638R_RS06695.p01;Parent=BF638R_RS06695.t01;Name=BF638R_RS06695;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768177.1;old_locus_tag=BF638R_1437;product=N-acetyltransferase;protein_id=WP_008768177.1;transl_table=11;translation=length.153
NC_016776	GenBank	exon	908	1369	.	+	1	Parent=BF638R_RS06695.t01
NC_016776	GenBank	gene	1395	2522	.	+	1	ID=BF638R_RS06700;Name=BF638R_RS06700;old_locus_tag=BF638R_1438
NC_016776	GenBank	mRNA	1395	2522	.	+	1	ID=BF638R_RS06700.t01;Parent=BF638R_RS06700
NC_016776	GenBank	CDS	1395	2522	.	+	1	ID=BF638R_RS06700.p01;Parent=BF638R_RS06700.t01;Name=BF638R_RS06700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005809582.1;old_locus_tag=BF638R_1438;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_014298515.1;transl_table=11;translation=length.375
NC_016776	GenBank	exon	1395	2522	.	+	1	Parent=BF638R_RS06700.t01
NC_016776	GenBank	gene	2550	4085	.	+	1	ID=BF638R_RS06705;Name=BF638R_RS06705;old_locus_tag=BF638R_1439
NC_016776	GenBank	mRNA	2550	4085	.	+	1	ID=BF638R_RS06705.t01;Parent=BF638R_RS06705
NC_016776	GenBank	CDS	2550	4085	.	+	1	ID=BF638R_RS06705.p01;Parent=BF638R_RS06705.t01;Name=BF638R_RS06705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768179.1;old_locus_tag=BF638R_1439;product=membrane protein;protein_id=WP_014298516.1;transl_table=11;translation=length.511
NC_016776	GenBank	exon	2550	4085	.	+	1	Parent=BF638R_RS06705.t01
NC_016776	GenBank	gene	4189	5604	.	+	1	ID=BF638R_RS06710;Name=BF638R_RS06710;old_locus_tag=BF638R_1440
NC_016776	GenBank	mRNA	4189	5604	.	+	1	ID=BF638R_RS06710.t01;Parent=BF638R_RS06710
NC_016776	GenBank	CDS	4189	5604	.	+	1	ID=BF638R_RS06710.p01;Parent=BF638R_RS06710.t01;Name=BF638R_RS06710;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768180.1;old_locus_tag=BF638R_1440;product=hypothetical protein;protein_id=WP_014298517.1;transl_table=11;translation=length.471
NC_016776	GenBank	exon	4189	5604	.	+	1	Parent=BF638R_RS06710.t01
NC_016776	GenBank	gene	5735	6802	.	+	1	ID=BF638R_RS06715;Name=BF638R_RS06715;old_locus_tag=BF638R_1441
NC_016776	GenBank	mRNA	5735	6802	.	+	1	ID=BF638R_RS06715.t01;Parent=BF638R_RS06715
NC_016776	GenBank	CDS	5735	6802	.	+	1	ID=BF638R_RS06715.p01;Parent=BF638R_RS06715.t01;Name=BF638R_RS06715;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768181.1;old_locus_tag=BF638R_1441;product=hypothetical protein;protein_id=WP_014298518.1;transl_table=11;translation=length.355
NC_016776	GenBank	exon	5735	6802	.	+	1	Parent=BF638R_RS06715.t01
NC_016776	GenBank	gene	6815	7831	.	+	1	ID=BF638R_RS06720;Name=BF638R_RS06720;old_locus_tag=BF638R_1442
NC_016776	GenBank	mRNA	6815	7831	.	+	1	ID=BF638R_RS06720.t01;Parent=BF638R_RS06720
NC_016776	GenBank	CDS	6815	7831	.	+	1	ID=BF638R_RS06720.p01;Parent=BF638R_RS06720.t01;Name=BF638R_RS06720;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768182.1;old_locus_tag=BF638R_1442;product=kinase;protein_id=WP_008768182.1;transl_table=11;translation=length.338
NC_016776	GenBank	exon	6815	7831	.	+	1	Parent=BF638R_RS06720.t01
NC_016776	GenBank	gene	7836	8792	.	+	1	ID=BF638R_RS06725;Name=BF638R_RS06725;old_locus_tag=BF638R_1443
NC_016776	GenBank	mRNA	7836	8792	.	+	1	ID=BF638R_RS06725.t01;Parent=BF638R_RS06725
NC_016776	GenBank	CDS	7836	8792	.	+	1	ID=BF638R_RS06725.p01;Parent=BF638R_RS06725.t01;Name=BF638R_RS06725;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768183.1;old_locus_tag=BF638R_1443;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_014298519.1;transl_table=11;translation=length.318
NC_016776	GenBank	exon	7836	8792	.	+	1	Parent=BF638R_RS06725.t01
NC_016776	GenBank	gene	9323	9862	.	+	1	ID=BF638R_RS06730;Name=BF638R_RS06730;old_locus_tag=BF638R_1444
NC_016776	GenBank	mRNA	9323	9862	.	+	1	ID=BF638R_RS06730.t01;Parent=BF638R_RS06730
NC_016776	GenBank	CDS	9323	9862	.	+	1	ID=BF638R_RS06730.p01;Parent=BF638R_RS06730.t01;Name=BF638R_RS06730;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298520.1;old_locus_tag=BF638R_1444;product=HAD-IIIA family hydrolase;protein_id=WP_014298520.1;transl_table=11;translation=length.179
NC_016776	GenBank	exon	9323	9862	.	+	1	Parent=BF638R_RS06730.t01
NC_016776	GenBank	gene	9867	10511	.	+	1	ID=BF638R_RS06735;Name=BF638R_RS06735;old_locus_tag=BF638R_1445
NC_016776	GenBank	mRNA	9867	10511	.	+	1	ID=BF638R_RS06735.t01;Parent=BF638R_RS06735
NC_016776	GenBank	CDS	9867	10511	.	+	1	ID=BF638R_RS06735.p01;Parent=BF638R_RS06735.t01;Name=BF638R_RS06735;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768185.1;old_locus_tag=BF638R_1445;product=SIS domain-containing protein;protein_id=WP_014298521.1;transl_table=11;translation=length.214
NC_016776	GenBank	exon	9867	10511	.	+	1	Parent=BF638R_RS06735.t01
NC_016776	GenBank	gene	10513	11226	.	+	1	ID=BF638R_RS06740;Name=BF638R_RS06740;old_locus_tag=BF638R_1446
NC_016776	GenBank	mRNA	10513	11226	.	+	1	ID=BF638R_RS06740.t01;Parent=BF638R_RS06740
NC_016776	GenBank	CDS	10513	11226	.	+	1	ID=BF638R_RS06740.p01;Parent=BF638R_RS06740.t01;Name=BF638R_RS06740;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298522.1;old_locus_tag=BF638R_1446;product=NTP transferase domain-containing protein;protein_id=WP_014298522.1;transl_table=11;translation=length.237
NC_016776	GenBank	exon	10513	11226	.	+	1	Parent=BF638R_RS06740.t01
NC_016776	GenBank	gene	11269	12396	.	+	1	ID=BF638R_RS06745;Name=BF638R_RS06745;old_locus_tag=BF638R_1447
NC_016776	GenBank	mRNA	11269	12396	.	+	1	ID=BF638R_RS06745.t01;Parent=BF638R_RS06745
NC_016776	GenBank	CDS	11269	12396	.	+	1	ID=BF638R_RS06745.p01;Parent=BF638R_RS06745.t01;Name=BF638R_RS06745;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768187.1;old_locus_tag=BF638R_1447;product=glycosyltransferase;protein_id=WP_014298523.1;transl_table=11;translation=length.375
NC_016776	GenBank	exon	11269	12396	.	+	1	Parent=BF638R_RS06745.t01
NC_016776	GenBank	gene	12407	13198	.	+	1	ID=BF638R_RS06750;Name=BF638R_RS06750;old_locus_tag=BF638R_1448
NC_016776	GenBank	mRNA	12407	13198	.	+	1	ID=BF638R_RS06750.t01;Parent=BF638R_RS06750
NC_016776	GenBank	CDS	12407	13198	.	+	1	ID=BF638R_RS06750.p01;Parent=BF638R_RS06750.t01;Name=BF638R_RS06750;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298524.1;old_locus_tag=BF638R_1448;product=hypothetical protein;protein_id=WP_014298524.1;transl_table=11;translation=length.263
NC_016776	GenBank	exon	12407	13198	.	+	1	Parent=BF638R_RS06750.t01
NC_016776	GenBank	pseudogenic_exon	13209	14533	.	+	1	ID=BF638R_RS06755;Name=BF638R_RS06755;Note=frameshifted%3B internal stop%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002560232.1;product=NAD-dependent epimerase/dehydratase family protein;pseudo=_no_value;transl_table=11
NC_016776	GenBank	pseudogene	13209	14533	.	+	1	ID=BF638R_RS06755.pseudogene;Alias=BF638R_RS06755;Name=BF638R_RS06755;pseudo=_no_value
NC_016776	GenBank	gene	14988	16253	.	+	1	ID=BF638R_RS06770;Name=BF638R_RS06770;old_locus_tag=BF638R_1453
NC_016776	GenBank	mRNA	14988	16253	.	+	1	ID=BF638R_RS06770.t01;Parent=BF638R_RS06770
NC_016776	GenBank	CDS	14988	16253	.	+	1	ID=BF638R_RS06770.p01;Parent=BF638R_RS06770.t01;Name=BF638R_RS06770;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768191.1;old_locus_tag=BF638R_1453;product=glycosyltransferase family 4 protein;protein_id=WP_022348520.1;transl_table=11;translation=length.421
NC_016776	GenBank	exon	14988	16253	.	+	1	Parent=BF638R_RS06770.t01
NC_016776	GenBank	gene	16681	17562	.	+	1	ID=BF638R_RS06775;Name=rfbA;locus_tag=BF638R_RS06775;old_locus_tag=BF638R_1454
NC_016776	GenBank	mRNA	16681	17562	.	+	1	ID=BF638R_RS06775.t01;Parent=BF638R_RS06775
NC_016776	GenBank	CDS	16681	17562	.	+	1	ID=BF638R_RS06775.p01;Parent=BF638R_RS06775.t01;eC_number=2.7.7.24;Name=rfbA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298528.1;locus_tag=BF638R_RS06775;old_locus_tag=BF638R_1454;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_014298528.1;transl_table=11;translation=length.293
NC_016776	GenBank	exon	16681	17562	.	+	1	Parent=BF638R_RS06775.t01
NC_016776	GenBank	gene	17562	18188	.	+	1	ID=BF638R_RS06780;Name=BF638R_RS06780;old_locus_tag=BF638R_1455
NC_016776	GenBank	mRNA	17562	18188	.	+	1	ID=BF638R_RS06780.t01;Parent=BF638R_RS06780
NC_016776	GenBank	CDS	17562	18188	.	+	1	ID=BF638R_RS06780.p01;Parent=BF638R_RS06780.t01;Name=BF638R_RS06780;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298529.1;old_locus_tag=BF638R_1455;product=hypothetical protein;protein_id=WP_014298529.1;transl_table=11;translation=length.208
NC_016776	GenBank	exon	17562	18188	.	+	1	Parent=BF638R_RS06780.t01
NC_016776	GenBank	gene	18196	18429	.	+	1	ID=BF638R_RS06785;Name=BF638R_RS06785;old_locus_tag=BF638R_1456
NC_016776	GenBank	mRNA	18196	18429	.	+	1	ID=BF638R_RS06785.t01;Parent=BF638R_RS06785
NC_016776	GenBank	CDS	18196	18429	.	+	1	ID=BF638R_RS06785.p01;Parent=BF638R_RS06785.t01;Name=BF638R_RS06785;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014298530.1;old_locus_tag=BF638R_1456;product=acyl carrier protein;protein_id=WP_014298530.1;transl_table=11;translation=length.77
NC_016776	GenBank	exon	18196	18429	.	+	1	Parent=BF638R_RS06785.t01
NC_016776	GenBank	gene	18429	19187	.	+	1	ID=BF638R_RS06790;Name=BF638R_RS06790;old_locus_tag=BF638R_1457
NC_016776	GenBank	mRNA	18429	19187	.	+	1	ID=BF638R_RS06790.t01;Parent=BF638R_RS06790
NC_016776	GenBank	CDS	18429	19187	.	+	1	ID=BF638R_RS06790.p01;Parent=BF638R_RS06790.t01;Name=BF638R_RS06790;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008768195.1;old_locus_tag=BF638R_1457;product=SDR family oxidoreductase;protein_id=WP_008768195.1;transl_table=11;translation=length.252
NC_016776	GenBank	exon	18429	19187	.	+	1	Parent=BF638R_RS06790.t01
NC_016776	GenBank	gene	19351	20352	.	+	1	ID=BF638R_RS06795;Name=BF638R_RS06795;old_locus_tag=BF638R_1458
NC_016776	GenBank	mRNA	19351	20352	.	+	1	ID=BF638R_RS06795.t01;Parent=BF638R_RS06795
NC_016776	GenBank	CDS	19351	20352	.	+	1	ID=BF638R_RS06795.p01;Parent=BF638R_RS06795.t01;Name=BF638R_RS06795;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005809551.1;old_locus_tag=BF638R_1458;product=ketoacyl-ACP synthase III;protein_id=WP_014298531.1;transl_table=11;translation=length.333
NC_016776	GenBank	exon	19351	20352	.	+	1	Parent=BF638R_RS06795.t01
NC_016776	GenBank	gene	20395	21618	.	+	1	ID=BF638R_RS06800;Name=BF638R_RS06800;old_locus_tag=BF638R_1459
NC_016776	GenBank	mRNA	20395	21618	.	+	1	ID=BF638R_RS06800.t01;Parent=BF638R_RS06800
NC_016776	GenBank	CDS	20395	21618	.	+	1	ID=BF638R_RS06800.p01;Parent=BF638R_RS06800.t01;Name=BF638R_RS06800;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005786175.1;old_locus_tag=BF638R_1459;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_041161352.1;transl_table=11;translation=length.407
NC_016776	GenBank	exon	20395	21618	.	+	1	Parent=BF638R_RS06800.t01
NC_016776	GenBank	gene	21650	22237	.	+	1	ID=BF638R_RS06805;Name=BF638R_RS06805;old_locus_tag=BF638R_1460
NC_016776	GenBank	mRNA	21650	22237	.	+	1	ID=BF638R_RS06805.t01;Parent=BF638R_RS06805
NC_016776	GenBank	CDS	21650	22237	.	+	1	ID=BF638R_RS06805.p01;Parent=BF638R_RS06805.t01;Name=BF638R_RS06805;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011203508.1;old_locus_tag=BF638R_1460;product=sugar transferase;protein_id=WP_005795339.1;transl_table=11;translation=length.195
NC_016776	GenBank	exon	21650	22237	.	+	1	Parent=BF638R_RS06805.t01