##gff-version 3
##sequence-region NC_009441 1 20760
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	20760	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	969	.	-	1	ID=FJOH_RS25560;Dbxref=GeneID:31767883;Name=FJOH_RS25560;old_locus_tag=Fjoh_4946
NC_009441	GenBank	mRNA	1	969	.	-	1	ID=FJOH_RS25560.t01;Parent=FJOH_RS25560
NC_009441	GenBank	CDS	1	969	.	-	1	ID=FJOH_RS25560.p01;Parent=FJOH_RS25560.t01;Dbxref=GeneID:31767883;Name=FJOH_RS25560;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007211751.1;old_locus_tag=Fjoh_4946;product=glycoside hydrolase family 5 protein;protein_id=WP_012026911.1;transl_table=11;translation=length.322
NC_009441	GenBank	exon	1	969	.	-	1	Parent=FJOH_RS25560.t01
NC_009441	GenBank	gene	980	2215	.	-	1	ID=FJOH_RS25565;Dbxref=GeneID:31767884;Name=FJOH_RS25565;old_locus_tag=Fjoh_4947
NC_009441	GenBank	mRNA	980	2215	.	-	1	ID=FJOH_RS25565.t01;Parent=FJOH_RS25565
NC_009441	GenBank	CDS	980	2215	.	-	1	ID=FJOH_RS25565.p01;Parent=FJOH_RS25565.t01;Dbxref=GeneID:31767884;Name=FJOH_RS25565;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007805892.1;old_locus_tag=Fjoh_4947;product=glycoside hydrolase family 27 protein;protein_id=WP_012026912.1;transl_table=11;translation=length.411
NC_009441	GenBank	exon	980	2215	.	-	1	Parent=FJOH_RS25565.t01
NC_009441	GenBank	gene	2334	3296	.	-	1	ID=FJOH_RS25570;Dbxref=GeneID:31767885;Name=FJOH_RS25570;old_locus_tag=Fjoh_4948
NC_009441	GenBank	mRNA	2334	3296	.	-	1	ID=FJOH_RS25570.t01;Parent=FJOH_RS25570
NC_009441	GenBank	CDS	2334	3296	.	-	1	ID=FJOH_RS25570.p01;Parent=FJOH_RS25570.t01;Dbxref=GeneID:31767885;Name=FJOH_RS25570;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:TIGR04183.1;old_locus_tag=Fjoh_4948;product=T9SS type A sorting domain-containing protein;protein_id=WP_012026913.1;transl_table=11;translation=length.320
NC_009441	GenBank	exon	2334	3296	.	-	1	Parent=FJOH_RS25570.t01
NC_009441	GenBank	gene	3492	4529	.	-	1	ID=FJOH_RS25575;Dbxref=GeneID:31767886;Name=FJOH_RS25575;old_locus_tag=Fjoh_4949
NC_009441	GenBank	mRNA	3492	4529	.	-	1	ID=FJOH_RS25575.t01;Parent=FJOH_RS25575
NC_009441	GenBank	CDS	3492	4529	.	-	1	ID=FJOH_RS25575.p01;Parent=FJOH_RS25575.t01;Dbxref=GeneID:31767886;Name=FJOH_RS25575;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012026914.1;old_locus_tag=Fjoh_4949;product=hypothetical protein;protein_id=WP_012026914.1;transl_table=11;translation=length.345
NC_009441	GenBank	exon	3492	4529	.	-	1	Parent=FJOH_RS25575.t01
NC_009441	GenBank	gene	4549	6147	.	-	1	ID=FJOH_RS25580;Dbxref=GeneID:31767887;Name=FJOH_RS25580;old_locus_tag=Fjoh_4950
NC_009441	GenBank	mRNA	4549	6147	.	-	1	ID=FJOH_RS25580.t01;Parent=FJOH_RS25580
NC_009441	GenBank	CDS	4549	6147	.	-	1	ID=FJOH_RS25580.p01;Parent=FJOH_RS25580.t01;Dbxref=GeneID:31767887;Name=FJOH_RS25580;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008468134.1;old_locus_tag=Fjoh_4950;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012026915.1;transl_table=11;translation=length.532
NC_009441	GenBank	exon	4549	6147	.	-	1	Parent=FJOH_RS25580.t01
NC_009441	GenBank	gene	6161	9340	.	-	1	ID=FJOH_RS25585;Dbxref=GeneID:31767888;Name=FJOH_RS25585;old_locus_tag=Fjoh_4951
NC_009441	GenBank	mRNA	6161	9340	.	-	1	ID=FJOH_RS25585.t01;Parent=FJOH_RS25585
NC_009441	GenBank	CDS	6161	9340	.	-	1	ID=FJOH_RS25585.p01;Parent=FJOH_RS25585.t01;Dbxref=GeneID:31767888;Name=FJOH_RS25585;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008468132.1;old_locus_tag=Fjoh_4951;product=TonB-dependent receptor;protein_id=WP_044048163.1;transl_table=11;translation=length.1059
NC_009441	GenBank	exon	6161	9340	.	-	1	Parent=FJOH_RS25585.t01
NC_009441	GenBank	gene	9664	10542	.	-	1	ID=FJOH_RS25590;Dbxref=GeneID:31767889;Name=FJOH_RS25590;old_locus_tag=Fjoh_4952
NC_009441	GenBank	mRNA	9664	10542	.	-	1	ID=FJOH_RS25590.t01;Parent=FJOH_RS25590
NC_009441	GenBank	CDS	9664	10542	.	-	1	ID=FJOH_RS25590.p01;Parent=FJOH_RS25590.t01;Dbxref=GeneID:31767889;Name=FJOH_RS25590;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012026917.1;old_locus_tag=Fjoh_4952;product=helix-turn-helix transcriptional regulator;protein_id=WP_012026917.1;transl_table=11;translation=length.292
NC_009441	GenBank	exon	9664	10542	.	-	1	Parent=FJOH_RS25590.t01
NC_009441	GenBank	gene	10849	11979	.	+	1	ID=FJOH_RS25595;Dbxref=GeneID:31767890;Name=FJOH_RS25595;old_locus_tag=Fjoh_4953
NC_009441	GenBank	mRNA	10849	11979	.	+	1	ID=FJOH_RS25595.t01;Parent=FJOH_RS25595
NC_009441	GenBank	CDS	10849	11979	.	+	1	ID=FJOH_RS25595.p01;Parent=FJOH_RS25595.t01;Dbxref=GeneID:31767890;Name=FJOH_RS25595;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007805883.1;old_locus_tag=Fjoh_4953;product=mannan endo-1%2C4-beta-mannosidase;protein_id=WP_012026918.1;transl_table=11;translation=length.376
NC_009441	GenBank	exon	10849	11979	.	+	1	Parent=FJOH_RS25595.t01
NC_009441	GenBank	gene	12024	13415	.	+	1	ID=FJOH_RS25600;Dbxref=GeneID:31767891;Name=FJOH_RS25600;old_locus_tag=Fjoh_4954
NC_009441	GenBank	mRNA	12024	13415	.	+	1	ID=FJOH_RS25600.t01;Parent=FJOH_RS25600
NC_009441	GenBank	CDS	12024	13415	.	+	1	ID=FJOH_RS25600.p01;Parent=FJOH_RS25600.t01;Dbxref=GeneID:31767891;Name=FJOH_RS25600;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007805881.1;old_locus_tag=Fjoh_4954;product=MFS transporter;protein_id=WP_012026919.1;transl_table=11;translation=length.463
NC_009441	GenBank	exon	12024	13415	.	+	1	Parent=FJOH_RS25600.t01
NC_009441	GenBank	gene	13447	14637	.	+	1	ID=FJOH_RS25605;Dbxref=GeneID:31767892;Name=FJOH_RS25605;old_locus_tag=Fjoh_4955
NC_009441	GenBank	mRNA	13447	14637	.	+	1	ID=FJOH_RS25605.t01;Parent=FJOH_RS25605
NC_009441	GenBank	CDS	13447	14637	.	+	1	ID=FJOH_RS25605.p01;Parent=FJOH_RS25605.t01;Dbxref=GeneID:31767892;Name=FJOH_RS25605;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008468127.1;old_locus_tag=Fjoh_4955;product=glycosidase;protein_id=WP_012026920.1;transl_table=11;translation=length.396
NC_009441	GenBank	exon	13447	14637	.	+	1	Parent=FJOH_RS25605.t01
NC_009441	GenBank	gene	14644	15834	.	+	1	ID=FJOH_RS25610;Dbxref=GeneID:31767893;Name=FJOH_RS25610;old_locus_tag=Fjoh_4956
NC_009441	GenBank	mRNA	14644	15834	.	+	1	ID=FJOH_RS25610.t01;Parent=FJOH_RS25610
NC_009441	GenBank	CDS	14644	15834	.	+	1	ID=FJOH_RS25610.p01;Parent=FJOH_RS25610.t01;Dbxref=GeneID:31767893;Name=FJOH_RS25610;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007805877.1;old_locus_tag=Fjoh_4956;product=N-acyl-D-glucosamine 2-epimerase;protein_id=WP_012026921.1;transl_table=11;translation=length.396
NC_009441	GenBank	exon	14644	15834	.	+	1	Parent=FJOH_RS25610.t01
NC_009441	GenBank	gene	15840	17069	.	+	1	ID=FJOH_RS25615;Dbxref=GeneID:31767894;Name=FJOH_RS25615;old_locus_tag=Fjoh_4957
NC_009441	GenBank	mRNA	15840	17069	.	+	1	ID=FJOH_RS25615.t01;Parent=FJOH_RS25615
NC_009441	GenBank	CDS	15840	17069	.	+	1	ID=FJOH_RS25615.p01;Parent=FJOH_RS25615.t01;Dbxref=GeneID:31767894;eC_number=3.2.1.78;Name=FJOH_RS25615;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007805872.1;old_locus_tag=Fjoh_4957;product=mannan endo-1%2C4-beta-mannosidase;protein_id=WP_012026922.1;transl_table=11;translation=length.409
NC_009441	GenBank	exon	15840	17069	.	+	1	Parent=FJOH_RS25615.t01
NC_009441	GenBank	gene	17217	18506	.	+	1	ID=FJOH_RS25620;Dbxref=GeneID:31767895;Name=FJOH_RS25620;old_locus_tag=Fjoh_4958
NC_009441	GenBank	mRNA	17217	18506	.	+	1	ID=FJOH_RS25620.t01;Parent=FJOH_RS25620
NC_009441	GenBank	CDS	17217	18506	.	+	1	ID=FJOH_RS25620.p01;Parent=FJOH_RS25620.t01;Dbxref=GeneID:31767895;Name=FJOH_RS25620;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008468125.1;old_locus_tag=Fjoh_4958;product=cellulase family glycosylhydrolase;protein_id=WP_012026923.1;transl_table=11;translation=length.429
NC_009441	GenBank	exon	17217	18506	.	+	1	Parent=FJOH_RS25620.t01
NC_009441	GenBank	gene	18781	20760	.	+	1	ID=FJOH_RS25625;Dbxref=GeneID:31767896;Name=FJOH_RS25625;old_locus_tag=Fjoh_4959
NC_009441	GenBank	mRNA	18781	20760	.	+	1	ID=FJOH_RS25625.t01;Parent=FJOH_RS25625
NC_009441	GenBank	CDS	18781	20760	.	+	1	ID=FJOH_RS25625.p01;Parent=FJOH_RS25625.t01;Dbxref=GeneID:31767896;Name=FJOH_RS25625;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013443869.1;old_locus_tag=Fjoh_4959;product=glycoside hydrolase family 97 protein;protein_id=WP_012026924.1;transl_table=11;translation=length.659
NC_009441	GenBank	exon	18781	20760	.	+	1	Parent=FJOH_RS25625.t01