##gff-version 3
##sequence-region NC_009441 1 19652
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	19652	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	2280	.	+	1	ID=FJOH_RS19995;Dbxref=GeneID:31766782;Name=bglX;locus_tag=FJOH_RS19995;old_locus_tag=Fjoh_3861
NC_009441	GenBank	mRNA	1	2280	.	+	1	ID=FJOH_RS19995.t01;Parent=FJOH_RS19995
NC_009441	GenBank	CDS	1	2280	.	+	1	ID=FJOH_RS19995.p01;Parent=FJOH_RS19995.t01;Dbxref=GeneID:31766782;eC_number=3.2.1.21;Name=bglX;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807997.1;locus_tag=FJOH_RS19995;old_locus_tag=Fjoh_3861;product=beta-glucosidase BglX;protein_id=WP_012025838.1;transl_table=11;translation=length.759
NC_009441	GenBank	exon	1	2280	.	+	1	Parent=FJOH_RS19995.t01
NC_009441	GenBank	gene	2643	6797	.	+	1	ID=FJOH_RS20000;Dbxref=GeneID:31766783;Name=FJOH_RS20000;old_locus_tag=Fjoh_3862
NC_009441	GenBank	mRNA	2643	6797	.	+	1	ID=FJOH_RS20000.t01;Parent=FJOH_RS20000
NC_009441	GenBank	CDS	2643	6797	.	+	1	ID=FJOH_RS20000.p01;Parent=FJOH_RS20000.t01;Dbxref=GeneID:31766783;Name=FJOH_RS20000;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807996.1;old_locus_tag=Fjoh_3862;product=hybrid sensor histidine kinase/response regulator transcription factor;protein_id=WP_012025839.1;transl_table=11;translation=length.1384
NC_009441	GenBank	exon	2643	6797	.	+	1	Parent=FJOH_RS20000.t01
NC_009441	GenBank	gene	7238	10342	.	+	1	ID=FJOH_RS20005;Dbxref=GeneID:31766784;Name=FJOH_RS20005;old_locus_tag=Fjoh_3863
NC_009441	GenBank	mRNA	7238	10342	.	+	1	ID=FJOH_RS20005.t01;Parent=FJOH_RS20005
NC_009441	GenBank	CDS	7238	10342	.	+	1	ID=FJOH_RS20005.p01;Parent=FJOH_RS20005.t01;Dbxref=GeneID:31766784;Name=FJOH_RS20005;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012025840.1;old_locus_tag=Fjoh_3863;product=TonB-dependent receptor;protein_id=WP_012025840.1;transl_table=11;translation=length.1034
NC_009441	GenBank	exon	7238	10342	.	+	1	Parent=FJOH_RS20005.t01
NC_009441	GenBank	gene	10401	11924	.	+	1	ID=FJOH_RS20010;Dbxref=GeneID:31766785;Name=FJOH_RS20010;old_locus_tag=Fjoh_3864
NC_009441	GenBank	mRNA	10401	11924	.	+	1	ID=FJOH_RS20010.t01;Parent=FJOH_RS20010
NC_009441	GenBank	CDS	10401	11924	.	+	1	ID=FJOH_RS20010.p01;Parent=FJOH_RS20010.t01;Dbxref=GeneID:31766785;Name=FJOH_RS20010;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807992.1;old_locus_tag=Fjoh_3864;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012025841.1;transl_table=11;translation=length.507
NC_009441	GenBank	exon	10401	11924	.	+	1	Parent=FJOH_RS20010.t01
NC_009441	GenBank	gene	11933	13036	.	+	1	ID=FJOH_RS20015;Dbxref=GeneID:31766786;Name=FJOH_RS20015;old_locus_tag=Fjoh_3865
NC_009441	GenBank	mRNA	11933	13036	.	+	1	ID=FJOH_RS20015.t01;Parent=FJOH_RS20015
NC_009441	GenBank	CDS	11933	13036	.	+	1	ID=FJOH_RS20015.p01;Parent=FJOH_RS20015.t01;Dbxref=GeneID:31766786;Name=FJOH_RS20015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807989.1;old_locus_tag=Fjoh_3865;product=hypothetical protein;protein_id=WP_012025842.1;transl_table=11;translation=length.367
NC_009441	GenBank	exon	11933	13036	.	+	1	Parent=FJOH_RS20015.t01
NC_009441	GenBank	gene	13385	14776	.	+	1	ID=FJOH_RS20020;Dbxref=GeneID:31766787;Name=FJOH_RS20020;old_locus_tag=Fjoh_3866
NC_009441	GenBank	mRNA	13385	14776	.	+	1	ID=FJOH_RS20020.t01;Parent=FJOH_RS20020
NC_009441	GenBank	CDS	13385	14776	.	+	1	ID=FJOH_RS20020.p01;Parent=FJOH_RS20020.t01;Dbxref=GeneID:31766787;eC_number=3.2.1.8;Name=FJOH_RS20020;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807987.1;old_locus_tag=Fjoh_3866;product=endo-1%2C4-beta-xylanase;protein_id=WP_012025843.1;transl_table=11;translation=length.463
NC_009441	GenBank	exon	13385	14776	.	+	1	Parent=FJOH_RS20020.t01
NC_009441	GenBank	gene	14970	15884	.	-	1	ID=FJOH_RS20025;Dbxref=GeneID:31766788;Name=FJOH_RS20025;old_locus_tag=Fjoh_3867
NC_009441	GenBank	mRNA	14970	15884	.	-	1	ID=FJOH_RS20025.t01;Parent=FJOH_RS20025
NC_009441	GenBank	CDS	14970	15884	.	-	1	ID=FJOH_RS20025.p01;Parent=FJOH_RS20025.t01;Dbxref=GeneID:31766788;Name=FJOH_RS20025;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807985.1;old_locus_tag=Fjoh_3867;product=glycoside hydrolase;protein_id=WP_012025844.1;transl_table=11;translation=length.304
NC_009441	GenBank	exon	14970	15884	.	-	1	Parent=FJOH_RS20025.t01
NC_009441	GenBank	gene	16115	17407	.	-	1	ID=FJOH_RS20030;Dbxref=GeneID:31766789;Name=FJOH_RS20030;old_locus_tag=Fjoh_3868
NC_009441	GenBank	mRNA	16115	17407	.	-	1	ID=FJOH_RS20030.t01;Parent=FJOH_RS20030
NC_009441	GenBank	CDS	16115	17407	.	-	1	ID=FJOH_RS20030.p01;Parent=FJOH_RS20030.t01;Dbxref=GeneID:31766789;Name=FJOH_RS20030;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013445170.1;old_locus_tag=Fjoh_3868;product=glycoside hydrolase;protein_id=WP_012025845.1;transl_table=11;translation=length.430
NC_009441	GenBank	exon	16115	17407	.	-	1	Parent=FJOH_RS20030.t01
NC_009441	GenBank	gene	18192	19652	.	+	1	ID=FJOH_RS20035;Dbxref=GeneID:31766790;Name=FJOH_RS20035;old_locus_tag=Fjoh_3869
NC_009441	GenBank	mRNA	18192	19652	.	+	1	ID=FJOH_RS20035.t01;Parent=FJOH_RS20035
NC_009441	GenBank	CDS	18192	19652	.	+	1	ID=FJOH_RS20035.p01;Parent=FJOH_RS20035.t01;Dbxref=GeneID:31766790;Name=FJOH_RS20035;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015030176.1;old_locus_tag=Fjoh_3869;product=MFS transporter;protein_id=WP_012025846.1;transl_table=11;translation=length.486
NC_009441	GenBank	exon	18192	19652	.	+	1	Parent=FJOH_RS20035.t01