##gff-version 3
##sequence-region NC_009441 1 11668
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	11668	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	2757	.	+	1	ID=FJOH_RS12625;Dbxref=GeneID:31765338;Name=FJOH_RS12625;old_locus_tag=Fjoh_2430
NC_009441	GenBank	mRNA	1	2757	.	+	1	ID=FJOH_RS12625.t01;Parent=FJOH_RS12625
NC_009441	GenBank	CDS	1	2757	.	+	1	ID=FJOH_RS12625.p01;Parent=FJOH_RS12625.t01;Dbxref=GeneID:31765338;Name=FJOH_RS12625;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020211335.1;old_locus_tag=Fjoh_2430;product=LuxR family transcriptional regulator;protein_id=WP_012024496.1;transl_table=11;translation=length.918
NC_009441	GenBank	exon	1	2757	.	+	1	Parent=FJOH_RS12625.t01
NC_009441	GenBank	gene	2999	6034	.	+	1	ID=FJOH_RS12630;Dbxref=GeneID:31765339;Name=FJOH_RS12630;old_locus_tag=Fjoh_2431
NC_009441	GenBank	mRNA	2999	6034	.	+	1	ID=FJOH_RS12630.t01;Parent=FJOH_RS12630
NC_009441	GenBank	CDS	2999	6034	.	+	1	ID=FJOH_RS12630.p01;Parent=FJOH_RS12630.t01;Dbxref=GeneID:31765339;Name=FJOH_RS12630;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807822.1;old_locus_tag=Fjoh_2431;product=TonB-dependent receptor;protein_id=WP_012024497.1;transl_table=11;translation=length.1011
NC_009441	GenBank	exon	2999	6034	.	+	1	Parent=FJOH_RS12630.t01
NC_009441	GenBank	gene	6046	7545	.	+	1	ID=FJOH_RS12635;Dbxref=GeneID:31765340;Name=FJOH_RS12635;old_locus_tag=Fjoh_2432
NC_009441	GenBank	mRNA	6046	7545	.	+	1	ID=FJOH_RS12635.t01;Parent=FJOH_RS12635
NC_009441	GenBank	CDS	6046	7545	.	+	1	ID=FJOH_RS12635.p01;Parent=FJOH_RS12635.t01;Dbxref=GeneID:31765340;Name=FJOH_RS12635;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007138760.1;old_locus_tag=Fjoh_2432;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_012024498.1;transl_table=11;translation=length.499
NC_009441	GenBank	exon	6046	7545	.	+	1	Parent=FJOH_RS12635.t01
NC_009441	GenBank	gene	7558	9159	.	+	1	ID=FJOH_RS12640;Dbxref=GeneID:31765341;Name=FJOH_RS12640;old_locus_tag=Fjoh_2433
NC_009441	GenBank	mRNA	7558	9159	.	+	1	ID=FJOH_RS12640.t01;Parent=FJOH_RS12640
NC_009441	GenBank	CDS	7558	9159	.	+	1	ID=FJOH_RS12640.p01;Parent=FJOH_RS12640.t01;Dbxref=GeneID:31765341;Name=FJOH_RS12640;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807819.1;old_locus_tag=Fjoh_2433;product=hypothetical protein;protein_id=WP_012024499.1;transl_table=11;translation=length.533
NC_009441	GenBank	exon	7558	9159	.	+	1	Parent=FJOH_RS12640.t01
NC_009441	GenBank	gene	9171	10841	.	+	1	ID=FJOH_RS12645;Dbxref=GeneID:31765342;Name=FJOH_RS12645;old_locus_tag=Fjoh_2434
NC_009441	GenBank	mRNA	9171	10841	.	+	1	ID=FJOH_RS12645.t01;Parent=FJOH_RS12645
NC_009441	GenBank	CDS	9171	10841	.	+	1	ID=FJOH_RS12645.p01;Parent=FJOH_RS12645.t01;Dbxref=GeneID:31765342;Name=FJOH_RS12645;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807817.1;old_locus_tag=Fjoh_2434;product=glycoside hydrolase family 16 protein;protein_id=WP_012024500.1;transl_table=11;translation=length.556
NC_009441	GenBank	exon	9171	10841	.	+	1	Parent=FJOH_RS12645.t01
NC_009441	GenBank	gene	10910	11668	.	+	1	ID=FJOH_RS12650;Dbxref=GeneID:31765343;Name=FJOH_RS12650;old_locus_tag=Fjoh_2435
NC_009441	GenBank	mRNA	10910	11668	.	+	1	ID=FJOH_RS12650.t01;Parent=FJOH_RS12650
NC_009441	GenBank	CDS	10910	11668	.	+	1	ID=FJOH_RS12650.p01;Parent=FJOH_RS12650.t01;Dbxref=GeneID:31765343;Name=FJOH_RS12650;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807815.1;old_locus_tag=Fjoh_2435;product=glycoside hydrolase family 16 protein;protein_id=WP_012024501.1;transl_table=11;translation=length.252
NC_009441	GenBank	exon	10910	11668	.	+	1	Parent=FJOH_RS12650.t01