##gff-version 3
##sequence-region NC_009480 1 21709
# conversion-by bp_genbank2gff3.pl
# organism Clavibacter michiganensis subsp. michiganensis NCPPB 382
# Note Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete sequence.
# date 09-FEB-2020
NC_009480	GenBank	region	1	21709	.	+	1	ID=NC_009480;Dbxref=BioProject:PRJNA224116,taxon:443906;Name=NC_009480;Note=Clavibacter michiganensis subsp. michiganensis NCPPB 382%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from AM711867. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/09/2020 21:57:58 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,210 CDSs (total) :: 3,155 Genes (coding) :: 3,097 CDSs (with protein) :: 3,097 Genes (RNA) :: 55 rRNAs :: 2,2,2 (5S,16S,23S) complete rRNAs :: 2,2,2 (5S,16S,23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 14 of 58 Pseudo Genes (incomplete) :: 44 of 58 Pseudo Genes (internal stop) :: 5 of 58 Pseudo Genes (multiple problems) :: 4 of 58 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AM711867. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/09/2020 21:57:58 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C210 CDSs (total) :: 3%2C155 Genes (coding) :: 3%2C097 CDSs (with protein) :: 3%2C097 Genes (RNA) :: 55 rRNAs :: 2%2C 2%2C 2 (5S%2C 16S%2C 23S) complete rRNAs :: 2%2C 2%2C 2 (5S%2C 16S%2C 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 14 of 58 Pseudo Genes (incomplete) :: 44 of 58 Pseudo Genes (internal stop) :: 5 of 58 Pseudo Genes (multiple problems) :: 4 of 58 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=09-FEB-2020;mol_type=genomic DNA;organism=Clavibacter michiganensis subsp. michiganensis NCPPB 382;strain=NCPPB 382;sub_species=michiganensis
NC_009480	GenBank	gene	1	4	.	+	1	ID=CMM_RS04680;Name=CMM_RS04680;old_locus_tag=CMM_0822
NC_009480	GenBank	mRNA	1	4	.	+	1	ID=CMM_RS04680.t01;Parent=CMM_RS04680
NC_009480	GenBank	CDS	1	4	.	+	1	ID=CMM_RS04680.p01;Parent=CMM_RS04680.t01;Name=CMM_RS04680;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=3;function=Predicted glycosyltransferases;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012297568.1;old_locus_tag=CMM_0822;product=DUF1972 domain-containing protein;protein_id=WP_012037507.1;transl_table=11;translation=length.410
NC_009480	GenBank	exon	1	4	.	+	1	Parent=CMM_RS04680.t01
NC_009480	GenBank	gene	1	828	.	+	1	ID=CMM_RS04685;Name=CMM_RS04685;old_locus_tag=CMM_0823
NC_009480	GenBank	mRNA	1	828	.	+	1	ID=CMM_RS04685.t01;Parent=CMM_RS04685
NC_009480	GenBank	CDS	1	828	.	+	1	ID=CMM_RS04685.p01;Parent=CMM_RS04685.t01;Name=CMM_RS04685;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=Phosphatidylglycerophosphate synthase;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015489528.1;old_locus_tag=CMM_0823;product=CDP-alcohol phosphatidyltransferase family protein;protein_id=WP_012037508.1;transl_table=11;translation=length.275
NC_009480	GenBank	exon	1	828	.	+	1	Parent=CMM_RS04685.t01
NC_009480	GenBank	gene	825	2066	.	+	1	ID=CMM_RS04690;Name=CMM_RS04690;old_locus_tag=CMM_0824
NC_009480	GenBank	mRNA	825	2066	.	+	1	ID=CMM_RS04690.t01;Parent=CMM_RS04690
NC_009480	GenBank	CDS	825	2066	.	+	1	ID=CMM_RS04690.p01;Parent=CMM_RS04690.t01;Name=CMM_RS04690;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=Predicted glycosyltransferases;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012037509.1;old_locus_tag=CMM_0824;product=glycosyltransferase;protein_id=WP_012037509.1;transl_table=11;translation=length.413
NC_009480	GenBank	exon	825	2066	.	+	1	Parent=CMM_RS04690.t01
NC_009480	GenBank	gene	2116	8001	.	+	1	ID=CMM_RS04695;Name=CMM_RS04695;old_locus_tag=CMM_0825
NC_009480	GenBank	mRNA	2116	8001	.	+	1	ID=CMM_RS04695.t01;Parent=CMM_RS04695
NC_009480	GenBank	CDS	2116	8001	.	+	1	ID=CMM_RS04695.p01;Parent=CMM_RS04695.t01;Name=CMM_RS04695;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=FOG: PKD repeat;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013772181.1;old_locus_tag=CMM_0825;product=PKD domain-containing protein;protein_id=WP_012037510.1;transl_table=11;translation=length.1961
NC_009480	GenBank	exon	2116	8001	.	+	1	Parent=CMM_RS04695.t01
NC_009480	GenBank	gene	8166	9536	.	+	1	ID=CMM_RS04700;Name=CMM_RS04700;old_locus_tag=CMM_0826
NC_009480	GenBank	mRNA	8166	9536	.	+	1	ID=CMM_RS04700.t01;Parent=CMM_RS04700
NC_009480	GenBank	CDS	8166	9536	.	+	1	ID=CMM_RS04700.p01;Parent=CMM_RS04700.t01;Name=CMM_RS04700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012299674.1;old_locus_tag=CMM_0826;product=hypothetical protein;protein_id=WP_012037511.1;transl_table=11;translation=length.456
NC_009480	GenBank	exon	8166	9536	.	+	1	Parent=CMM_RS04700.t01
NC_009480	GenBank	gene	9533	10921	.	+	1	ID=CMM_RS04705;Name=CMM_RS04705;old_locus_tag=CMM_0827
NC_009480	GenBank	mRNA	9533	10921	.	+	1	ID=CMM_RS04705.t01;Parent=CMM_RS04705
NC_009480	GenBank	CDS	9533	10921	.	+	1	ID=CMM_RS04705.p01;Parent=CMM_RS04705.t01;Name=CMM_RS04705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=Capsular polysaccharide biosynthesis protein;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015489533.1;old_locus_tag=CMM_0827;product=polysaccharide biosynthesis tyrosine autokinase;protein_id=WP_012037512.1;transl_table=11;translation=length.462
NC_009480	GenBank	exon	9533	10921	.	+	1	Parent=CMM_RS04705.t01
NC_009480	GenBank	gene	11797	12357	.	+	1	ID=CMM_RS16255;Name=CMM_RS16255;old_locus_tag=CMM_0828
NC_009480	GenBank	mRNA	11797	12357	.	+	1	ID=CMM_RS16255.t01;Parent=CMM_RS16255
NC_009480	GenBank	CDS	11797	12357	.	+	1	ID=CMM_RS16255.p01;Parent=CMM_RS16255.t01;Name=CMM_RS16255;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017830448.1;old_locus_tag=CMM_0828;product=hypothetical protein;protein_id=WP_148267558.1;transl_table=11;translation=length.186
NC_009480	GenBank	exon	11797	12357	.	+	1	Parent=CMM_RS16255.t01
NC_009480	GenBank	gene	12459	13523	.	-	1	ID=CMM_RS16540;Name=CMM_RS16540
NC_009480	GenBank	mRNA	12459	13523	.	-	1	ID=CMM_RS16540.t01;Parent=CMM_RS16540
NC_009480	GenBank	CDS	12459	13523	.	-	1	ID=CMM_RS16540.p01;Parent=CMM_RS16540.t01;Name=CMM_RS16540;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=WP_148267513.1;transl_table=11;translation=length.354
NC_009480	GenBank	exon	12459	13523	.	-	1	Parent=CMM_RS16540.t01
NC_009480	GenBank	gene	13751	14482	.	-	1	ID=CMM_RS16545;Name=CMM_RS16545
NC_009480	GenBank	mRNA	13751	14482	.	-	1	ID=CMM_RS16545.t01;Parent=CMM_RS16545
NC_009480	GenBank	CDS	13751	14482	.	-	1	ID=CMM_RS16545.p01;Parent=CMM_RS16545.t01;Name=CMM_RS16545;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=WP_143761553.1;transl_table=11;translation=length.243
NC_009480	GenBank	exon	13751	14482	.	-	1	Parent=CMM_RS16545.t01
NC_009480	GenBank	gene	14720	15367	.	-	1	ID=CMM_RS04715;Name=CMM_RS04715;old_locus_tag=CMM_0829
NC_009480	GenBank	mRNA	14720	15367	.	-	1	ID=CMM_RS04715.t01;Parent=CMM_RS04715
NC_009480	GenBank	CDS	14720	15367	.	-	1	ID=CMM_RS04715.p01;Parent=CMM_RS04715.t01;Name=CMM_RS04715;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=unknown;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015489535.1;old_locus_tag=CMM_0829;product=hypothetical protein;protein_id=WP_012037514.1;transl_table=11;translation=length.215
NC_009480	GenBank	exon	14720	15367	.	-	1	Parent=CMM_RS04715.t01
NC_009480	GenBank	gene	15567	17501	.	-	1	ID=CMM_RS04720;Name=CMM_RS04720;old_locus_tag=CMM_0830
NC_009480	GenBank	mRNA	15567	17501	.	-	1	ID=CMM_RS04720.t01;Parent=CMM_RS04720
NC_009480	GenBank	CDS	15567	17501	.	-	1	ID=CMM_RS04720.p01;Parent=CMM_RS04720.t01;Name=CMM_RS04720;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=Glycosyltransferases involved in cell wall biogenesis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015489536.1;old_locus_tag=CMM_0830;product=glycosyltransferase family 2 protein;protein_id=WP_012037515.1;transl_table=11;translation=length.644
NC_009480	GenBank	exon	15567	17501	.	-	1	Parent=CMM_RS04720.t01
NC_009480	GenBank	gene	17662	18711	.	+	1	ID=CMM_RS04725;Name=CMM_RS04725;old_locus_tag=CMM_0831
NC_009480	GenBank	mRNA	17662	18711	.	+	1	ID=CMM_RS04725.t01;Parent=CMM_RS04725
NC_009480	GenBank	CDS	17662	18711	.	+	1	ID=CMM_RS04725.p01;Parent=CMM_RS04725.t01;Name=CMM_RS04725;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;function=Predicted glycosyltransferases;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012037516.1;old_locus_tag=CMM_0831;product=glycosyl transferase;protein_id=WP_012037516.1;transl_table=11;translation=length.349
NC_009480	GenBank	exon	17662	18711	.	+	1	Parent=CMM_RS04725.t01
NC_009480	GenBank	pseudogenic_exon	18895	20409	.	+	1	ID=CMM_RS04730;Name=CMM_RS04730;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012299663.1;old_locus_tag=CMM_0832;product=lipopolysaccharide biosynthesis protein;pseudo=_no_value;transl_table=11
NC_009480	GenBank	pseudogene	18895	20409	.	+	1	ID=CMM_RS04730.pseudogene;Alias=CMM_RS04730;Name=CMM_RS04730;old_locus_tag=CMM_0832;pseudo=_no_value
NC_009480	GenBank	gene	20651	21709	.	+	1	ID=CMM_RS04735;Name=CMM_RS04735;old_locus_tag=CMM_0833
NC_009480	GenBank	mRNA	20651	21709	.	+	1	ID=CMM_RS04735.t01;Parent=CMM_RS04735
NC_009480	GenBank	CDS	20651	21709	.	+	1	ID=CMM_RS04735.p01;Parent=CMM_RS04735.t01;Name=CMM_RS04735;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012297572.1;old_locus_tag=CMM_0833;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_050976289.1;transl_table=11;translation=length.352
NC_009480	GenBank	exon	20651	21709	.	+	1	Parent=CMM_RS04735.t01