LOCUS AP012281 8206 bp DNA linear BCT 07-OCT-2016 DEFINITION Lactococcus lactis subsp. lactis IO-1 DNA, complete genome. ACCESSION AP012281 VERSION AP012281.1 DBLINK BioProject: PRJDA68077 BioSample: SAMD00060995 KEYWORDS . SOURCE Lactococcus lactis subsp. lactis IO-1 ORGANISM Lactococcus lactis subsp. lactis IO-1 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus. REFERENCE 1 AUTHORS Kato,H., Shiwa,Y., Oshima,K., Machii,M., Araya-Kojima,T., Zendo,T., Shimizu-Kadota,M., Hattori,M., Sonomoto,K. and Yoshikawa,H. TITLE Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid JOURNAL J. Bacteriol. 194 (8), 2102-2103 (2012) PUBMED 22461545 REFERENCE 2 (bases 1 to 8206) AUTHORS Shimizu-Kadota,M., Kato,H., Shiwa,Y., Sonomoto,K. and Yoshikawa,H. TITLE Direct Submission JOURNAL Submitted (28-SEP-2011) Contact:Hirofumi Yoshikawa Tokyo University of Agriculture, Department of Bioscience; 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan URL :http://nodai.cc-town.net/laboratory/single.php?id=23 COMMENT ##Genome-Assembly-Data-START## Assembly Method :: phrap v.1.080730 Genome Coverage :: 8.75x Sequencing Technology :: ABI 3730xl ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8206 /organism="Lactococcus lactis subsp. lactis IO-1" /mol_type="genomic DNA" /strain="IO-1" /sub_species="lactis" /db_xref="taxon:1046624" gene complement(1..1680) /gene="xynB" /locus_tag="lilo_1425" CDS complement(1..1680) /gene="xynB" /locus_tag="lilo_1425" /note="K01198 xylan 1,4-beta-xylosidase" /codon_start=1 /transl_table=11 /product="GH43_11|GH43" /protein_id="BAL51422.1" /translation="MSLIQNPILTGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKD LEHWNLLPSPLSTTTLLDMRGNSASGGIWAPDLSYADGKFWLVYTDVKVVNGAFKDMTN YLTTATDIKGPWTDPIKLNGLGFDASLFHDKDGRKYLVQQTWDHREYKHPFDGITLTEF DVTTMKLQPKTAKTIYNGTNVKLVEGPHLYQINDYYYLFAAQGGTVFTHQEVVARSKTL DTLSFETEPGDPFITNFDTPDNYIQKQGHGGLVSTPKGEWYYASLCARPWNHKNESSTD PRGWSSLGRETSIQKVEWDEEGWPRIVGGHGGTTFVEGPKDAIQTNAPADHSQKDDFAS STLDINWNTLRVPFTEKMGSVGNGKLTLIGQGSLANNFDLSLIARRWQAFYFDAEVKVK FNPFSYQQMAGLTNYYNDRHWSFAFITWNEINGAVIEVAENNRGNYTSYLKDNAIKIPD GTEYVWFRTKVRKESYSYEYSFDGKKFIEIPVVLDAAVLSDDYVLQTYGGFFTGAFVGL AAVDYSGYDRVAEFYNFDYKELGDKILPDGSYTWKTSESRFD" gene complement(1705..3189) /gene="xynT" /locus_tag="lilo_1426" CDS complement(1705..3189) /gene="xynT" /locus_tag="lilo_1426" /note="K03292 glycoside/pentoside/hexuronide:cation symporter, GPH family" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|P94488|2.A.2.3.2" /protein_id="BAL51423.1" /translation="MYSKMSNKIKQVQHDEYHELTLGERIGYGMGDFAQNLVFGTVGGF LALYMTTVNAIGTATAGFIFLFVRIINVFWDPMVGTFIDKRTSKAGKYRPWLLRAGIPL VILAALLFAPLPGVKGSVPFAFIVYFALDLVYSVVNIPYGSLNASLTRNPESVDKLTST RMMLANGANLLVYTLFPMFVQMAAPKERSLKDTGLFGLKLHMGNYTDPSAGHAWFGVYS VYMIIGAIALFLCYKLTKERVVATAEQSAEVKTTDLFLELKNNRPLVILGIFFMLAFTF MFFMNTVNGFFNQFVVGHSEWIGAIGLIASIPGIVFPIFWPRLKKIFGKKGFFHLFIGM FIVGEILTYIWSLNGMHDALWLAYVATFIKQWGLTSATGFMWALVPEVVAYGELKSGKR NAAIINAIMGLFFKIGFTLGGAIPLWFLAAYGFNETAAHQHANALAGINLTAIWIPAVL ALISMIIMQLYPISDKDVAEINQQLDKKRAQLKEAE" gene complement(3244..4248) /gene="xylM" /locus_tag="lilo_1427" CDS complement(3244..4248) /gene="xylM" /locus_tag="lilo_1427" /codon_start=1 /transl_table=11 /product="aldose 1-epimerase" /protein_id="BAL51424.1" /translation="MTFIISKESLPFRADKSISQITLSNERLTIVVHDYGARVHQLLIP DKNGTFENILLSKNNSETYANDGGYYGVICGPVAGRISGATYDSVSLEANEGKNNLHSG SHGWERQFWTYETFETDSSVGITLSLTDRESGIPGQIQAEVTYKLTDNKLEVTISGLSA TDTVFNPAWHPYFNLSAELSTTHEHFIQANVDFLVETNQENIPTGRLLNVDDSSYSIKE SVSIKKLLKDNPVGLDDCFVFNPKEDKSLMLYDPLSGRKLVAQTDRQAVVIYTATNPEI ESMINDRPMSKNRGIAIEFQEIPDLVHHPEWGTIELKAGQKKTFITEYLFTTD" gene complement(4251..5756) /gene="xylB" /locus_tag="lilo_1428" CDS complement(4251..5756) /gene="xylB" /locus_tag="lilo_1428" /note="K00854 xylulokinase" /codon_start=1 /transl_table=11 /product="xylulose kinase" /protein_id="BAL51425.1" /translation="MTYVLGIDLGTSSLKGILMDEVGNLITTKSAEYQIDTPKQGYSEQ RPEYWIVALESVLTGLSVEISDFGQQLAGISFSGQMHSLVVLDDNNKPVYPAILWNDVR TSKQCQEITDRLGQRLLEITKNIALEGFTLPKILWLQENEPEVWSRVKKIMLPKDYLSL WLTGNIYTEFSDAAGTLLLDIEKKQWSEEITDAFNIERKILPELIESTDRTGFVKAEIA ERYKLTNKVKVFAGGADNAAAALGVGLINEEVGLISMGTSGVVSAYEPKIADYKGKLHF FNHTVPGAYYSMGVTLAAGNSLNWYKETFGKGLSFNELLSEVYTVSPGSEGLLFTPYIV GERTPHFDSKIRGSFIGISAHHEQKHFSRAVLEGITFSLRDSKDIMEKTKNKKFKRLIS VGGGAQNPDIMQMQADIFNSEMIRLTVEQGPGLGACMIAAFGCGLFDSLEAVTKAFVHY KEASFIPNPKNVARYEQIYQIWKQVYKNISEISHQLVEFNDEG" gene complement(5823..7142) /gene="xylA" /locus_tag="lilo_1429" CDS complement(5823..7142) /gene="xylA" /locus_tag="lilo_1429" /note="K01805 xylose isomerase" /codon_start=1 /transl_table=11 /product="xylose isomerase" /protein_id="BAL51426.1" /translation="MAYFNDIAPIKYEGTKTKNMFAFRHYNPEEVVAGKTMEEQLHFAL AFWHTITMDGSDPFGGATMERPWDLEGGSELDRAHRRVDAFFEIAEKLGVKYYCFHDID IAPTGNSLKEFYANLDEITDHLLEKQKATGIKLLWNTANMFSNPRYMNGVSTSNRAEVF AYGAAQVKKGLELSKKLGGENYVFWGGREGYESLLNTDMGLEMDHMAKFFHLAIDYAKS INHLPIFLIEPKPKEPMTHQYDFDSATALAFLQKYDLDKYFKLNLETNHAWLAGHTFEH ELNTARTFNALGSIDANQGNYLLGWDTDEFPTLVIDITLAMHQILLNGGLGKGGINFDA KVRRTSFKAEDLILAHIAGMDTYARALKGAAAIIEDKFLSDIVDERYSSYKNTEVGQSI ENGTATFKSLAAFALEHGDDIELDSNHLEYIKSVLNDYLV" gene 7247..8206 /gene="xylR" /locus_tag="lilo_1430" CDS 7247..8206 /gene="xylR" /locus_tag="lilo_1430" /codon_start=1 /transl_table=11 /product="DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-SUPERFAMI LY|0036286,DBD-SUPERFAMILY|0035607" /protein_id="BAL51427.1" /translation="MNMKNELENIYHSKINNLNFLLVDITYRKPHLHFDIELAFVLEGA GQVITQEQCFEIKAGQAIIFNSCQVHELSSSDSMKLLILQFSSEIFKIIFPQLDKIYFE NHPFNLKNQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSEQ NKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNK IRSEKARTLLSSSKDNLLNIAYMCGFSDIRTLNTAFLKSYGVLPKEFRKNSVLFPNLNY MTFNQDKIDNQVFYSDRGSFDILQYYLEKNFEKTSSHF" ORIGIN 1 ctaatcaaat cttgattcac ttgttttcca agtataagaa ccgtctggta agatcttgtc 61 tcctaattct ttatagtcaa agttataaaa ttctgcaact ctatcatatc cagaataatc 121 aacggcagca agcccgacaa atgctccagt gaagaatccg ccataagttt gtaaaacata 181 atcatctgaa aggacagccg catctaagac tacaggaatt tctatgaatt ttttgccgtc 241 aaaactatat tcataagaat atgattcttt acggacttta gtgcggaacc aaacatattc 301 agttccgtca ggaattttaa tggcattatc ttttaaataa gaagtatagt ttcctctgtt 361 attctcagca acttcaatga cagctccatt gatttcattc catgtgataa aagcgaagga 421 ccaatgacgg tcattgtaat agttggttaa tccagccatt tgttggtaag aaaatgggtt 481 aaattttact ttgacttctg cgtcaaaata gaaagcttgc caacgtctag caatcaaaga 541 taaatcaaaa ttatttgcca aagagccctg accaatcaat gttaacttgc catttccaac 601 tgaacccatt ttctcagtaa atgggacacg caatgtattc cagttaatat ccaaagtaga 661 acttgcaaaa tcgtcttttt gactgtggtc agcaggtgca ttagtctgaa ttgcatcttt 721 tggtccttcg acaaaagttg tcccaccatg accaccaaca atacgtggcc aaccttcttc 781 gtcccattcc actttttgga tagaagtttc acgacctaaa gagctccaac cacgagggtc 841 tgtacttgat tcatttttat gattccatgg tcgagcgcat aaggaagcat aataccactc 901 acctttgggt gtagatacaa gacctccgtg tccttgcttt tgaatataat tatcaggagt 961 atcaaagttt gtaataaatg ggtcgccggg ttcagtttca aaagataaag tatccaatgt 1021 tttagagcgg gccacgactt cttggtgcgt aaagactgtt ccaccttgag ccgcaaaaag 1081 ataataataa tcattaattt ggtagaggtg tggaccttca accaatttaa catttgtacc 1141 attgtaaatc gttttagctg ttttaggttg taacttcatt gttgtcacat caaactcagt 1201 caatgtgatt ccgtcaaatg gatgcttgta ttcacgatga tcccatgttt gttgaactaa 1261 gtatttccgt ccgtctttat catggaaaag tgaagcgtca aagccaagac cattgagctt 1321 gattggatct gtccatggtc ctttgatgtc tgtagctgtt gttaaataat tggtcatatc 1381 tttgaaagca ccattgacaa ccttaacatc tgtataaaca agccaaaatt taccatcagc 1441 ataggataaa tcaggggccc aaattccacc tgaagctgag tttcctctca tatccaacaa 1501 agtggttgtt gacaatggac ttggaagtag gttccaatgt tctaaatctt ttgattcgtg 1561 caaacgaacg ccaggaaacc actcaaaagt ggagttcgcg atgtaataag tatcttctac 1621 gcgaataatg cttgggtctg cattaaaccc ggtaagaatt gggttttgaa taagtgacat 1681 gattttgtct ccttttaata taaattattc cgcttcctta agttgagcac gttttttatc 1741 aagctgttga ttaatctctg ctacatcctt atcagaaatt ggatagagtt gcataataat 1801 cattgatata agagcaagaa cagctggaat ccaaattgct gtgagattta taccagctaa 1861 ggcattagca tgttgatgtg ctgctgtctc attgaaacca taagctgcta agaaccaaag 1921 tggaatcgct ccacctaatg taaaaccaat tttgaagaaa agtcccatga ttgcgttaat 1981 aatcgcagca tttcttttac ccgatttgag ttctccataa gcgacaactt caggaactaa 2041 tgcccacatg aatcctgttg ctgaagttaa gccccattgt ttaataaagg tagcaacata 2101 agctaaccat agggcatcat gcattccatt aagggaccaa atatatgtca aaatttctcc 2161 aacaatgaac attccgataa aaagatggaa gaaacctttt ttaccgaaaa ttttctttaa 2221 acgaggccaa aagattggga aaacaattcc tggaattgaa gcaatgaggc caatggctcc 2281 aatccattct gaatgtccaa caacaaattg attaaagaaa ccatttacag tattcatgaa 2341 aaacatgaaa gtgaaagcta acatgaagaa aatccctaga atcacaagtg gacgattgtt 2401 ctttaattca aggaagaggt cagttgtttt aacttctgcc gattgttctg ctgttgcaac 2461 cacacgttct ttggtcaatt tataacatag gaataaagct attgcaccaa taatcatata 2521 aactgagtaa actccaaacc aagcatgtcc cgctgaggga tcagtataat tccccatatg 2581 aagtttaagg ccaaataatc cagtatcttt aagacttctt tctttcggtg ctgccatttg 2641 aacaaacatt ggaaagaggg tatagactaa gagatttgct ccatttgcca acatcatccg 2701 tgtacttgtc agcttatcaa cggattccgg attacgagtt aatgatgcat taagtgaacc 2761 ataaggaata ttaacaactg aatatactaa gtctaaggca aaataaacga taaaagcaaa 2821 ggggacagac cctttaacac ctggtagagg cgcaaaaagt aaggcagcta aaatcactag 2881 aggaatacct gctcttaaaa gccaaggacg atattttcct gcttttgatg ttcttttatc 2941 aataaaagtc ccaaccattg ggtcccaaaa tacattaata attcggacaa acagaaaaat 3001 aaaaccggct gttgcagtac caatcgcatt gactgttgtc atatagagtg ctaaaaatcc 3061 accaacagtc ccaaagacaa ggttttgtgc aaaatccccc attccataac caatacgttc 3121 tccaagcgtt aattcatgat attcatcatg ttgaacttgt ttgattttat tactcatttt 3181 tgagtacatc cctcctatta ttttattaaa attattttta ctgatgagtc tgtcagtaaa 3241 tttttaatcc gttgtaaata gatattctgt tataaaagtc tttttttgac ctgctttaag 3301 ctcaatcgtt ccccattcag gatgatgaac aaggtcaggt atttcttgaa attcaatagc 3361 aattccgcga tttttggaca ttggtctgtc attaatcatt gactctattt ctggatttgt 3421 ggctgtataa atcacgaccg cttgtctatc agtttgagct actagtttcc gaccagataa 3481 agggtcataa agcattaaac ttttatcttc tttgggatta aaaacaaagc aatcatctag 3541 tcctacggga ttatctttta aaagtttttt gattgaaacg ctttctttaa tggaataaga 3601 actgtcgtca acatttagaa gacgaccagt tggtatattc tcttgattgg tttcaaccag 3661 aaagtcaaca tttgcttgaa tgaaatgctc atgagtcgtt gataattctg ctgacagatt 3721 aaaataagga tgccaagccg gattaaagac tgtgtcagtt gctgacagac ctgatattgt 3781 cacttctaac ttattgtcag ttaatttata agtaacttct gcttggattt gacctggaat 3841 gcctgactct ctatcggtta aacttagcgt gataccaaca gatgagtctg tttcaaaagt 3901 ctcataagtc caaaattgtc tttcccaacc atgacttcct gaatgtaaat tattttttcc 3961 ttcatttgcc tctaaactga cagaatcata agtagcgcct gaaatacgcc cggcaactgg 4021 accgcaaatt acaccataat atcctccatc atttgcatag gtttcggaat tatttttgga 4081 taaaagaata ttttcaaatg ttccattttt gtcaggaatg aggagttgat ggactcttgc 4141 tccataatca tggacaacga tggtgagtcg ttcatttgat aatgtaatct gactaattga 4201 tttgtcagct ctaaaaggca aagattcttt ggaaatgata aatgtcataa ttaaccttcg 4261 tcattgaatt ctactaattg atgagaaatt tcagagatat ttttataaac ttgtttccaa 4321 atttgataaa tttgctcata acgtgctaca ttttttggat ttggtatgaa actggcttcc 4381 ttgtaatgaa caaaagcttt agtgaccgct tctaagctat caaaaagtcc gcaaccaaaa 4441 gcagcaatca tacaagcacc aagtcccggt ccctgctcaa ccgttaagcg aatcatttca 4501 gaattaaaaa tatctgcttg catttgcata atgtcgggat tttgcgcacc cccacctacg 4561 gaaatcaaac gtttaaactt cttgtttttc gttttttcca tgatatcttt agaatcacgc 4621 aatgaaaagg taattccttc aagcactgct cttgaaaaat gtttttgttc atgatgagca 4681 gaaattccta taaaacttcc gcgaattttt gaatcaaaat gtggtgttct ttcacctaca 4741 atatatggcg taaagagcaa tccttctgaa ccaggagaaa ctgtgtaaac ttctgacaaa 4801 agttcattga aactcaagcc ttttccaaaa gtttccttat accagtttaa agaatttcca 4861 gcagccaagg ttactcccat tgagtaataa gcacccggaa ccgtgtgatt aaagaaatga 4921 agttttcctt tataatctgc aattttaggt tcataagcgg aaacgactcc ggaggttccc 4981 attgaaatca agcccacttc ttcattgatt aaaccaacac ccagagcggc ggcagcatta 5041 tcggctccac cagcaaatac ttttacttta tttgtcagtt tatagcgttc agctatttct 5101 gccttgacaa atcctgttcg gtcagtggat tcaatcaatt caggtagaat tttcctttca 5161 atattgaatg cgtcagtaat ttcctctgac cattgttttt tctcaatatc taaaagtaaa 5221 gttcctgctg cgtcagaaaa ttcggtataa atatttcctg tcagccaaag gctcaagtaa 5281 tcttttggca acattatttt tttaactctt gaccaaacct ctggttcatt ttcttggagc 5341 caaagaattt ttggtaaggt aaatccttca agagcaatat tttttgtaat ctctaaaagt 5401 cgctgaccaa gtctgtcagt aatttcttga cattgtttgc ttgttctcac atcattccaa 5461 agaattgctg gataaactgg tttattattg tcatctaaaa caactaatga atgcatttgc 5521 cccgaaaaac taatgcctgc aagttgctga ccaaaatctg aaatttctac tgacaaaccg 5581 gtcagtactg attcaagtgc cacaatccaa tattctggac gttgttcaga atagccttgt 5641 ttgggcgtat caatttggta ttcagcagat tttgttgtaa ttaaattacc aacttcatcc 5701 atcaaaattc ctttaagact tgatgttcct aagtcaattc ctaacacgta agtcattatt 5761 attcctcata ataaaagaga aggacgagga ggaattcctc gccctctttt aagttctaaa 5821 ttttaaacaa gatagtcatt caatactgat ttgatgtatt ccaagtgatt agaatcaagt 5881 tcaatatcgt caccatgttc aagtgcaaat gcggcaagac ttttaaaagt tgctgttcca 5941 ttttcaatag attgtccaac ttctgtattt ttgtatgaac tataacgttc gtcaacaata 6001 tcagacaaga atttatcttc aatgattgct gctgcacctt tcaaagcacg cgcataagta 6061 tccatccctg caatatgagc aagaattaaa tcttctgctt tgaaacttgt acgacgtact 6121 ttcgcatcaa agttaattcc acctttgcca agtccaccgt tcaaaagaat ttggtgcatc 6181 gcaagtgtga tatcaataac aagtgttggg aattcatctg tatcccaacc aagcaagtaa 6241 tttccttgat tggcatcaat agaacccaaa gcattgaaag tacgagcagt atttaattcg 6301 tgttcaaaag tgtgtccagc caaccaagca tgatttgttt caagattgag tttgaaatat 6361 ttgtccaaat catatttttg caagaaagca agagctgttg ctgagtcaaa atcatattgg 6421 tgagtcattg gttcttttgg ttttggttca atcaagaaaa tgggcaagtg gttgattgat 6481 tttgcataat caattgccaa atggaagaat tttgccatat gatccatttc aagacccata 6541 tctgtattca aaagtgattc ataaccttca cgaccacccc agaagacgta attttcacca 6601 ccgagttttt tagaaagttc aagacctttt ttaacttgtg cagcaccata agcaaagact 6661 tcagcacgat tagaagttga aacaccattc atatagcggg gatttgaaaa catgtttgct 6721 gtattccaaa gtaatttaat ccctgttgct ttttgttttt caagaaggtg gtcagtaatt 6781 tcgtccaaat tagcataaaa ttctttcaaa gaatttccag taggtgcaat atcaatatca 6841 tggaaacaat aatatttaac acctaatttt tcagcaattt caaagaaagc atctactcga 6901 cggtgagcac ggtcaagttc agaaccacct tccaaatccc aagggcgttc cattgttgct 6961 cccccaaagg gatctgaccc atccattgta attgtatgcc aaaatgcaag ggcaaaatga 7021 agttgttctt ccattgtttt accagcaact acttcttctg gattataatg gcgaaaggca 7081 aacatatttt tagtttttgt accttcgtat ttgataggtg cgatgtcgtt aaagtaagcc 7141 atttttatag ctcctcctct ttatgatatt aatattattt tcaaactcgt aattactact 7201 atacatttct tgtaatatat gtcataataa tagtgattag gagagaatga acatgaaaaa 7261 cgaattagag aatatttatc attcaaaaat aaataatctt aattttttac ttgtcgatat 7321 tacttacaga aaacctcacc ttcattttga cattgaatta gcttttgtct tagaaggggc 7381 tggtcaggta ataacgcaag agcaatgctt tgaaatcaaa gctggacagg caattatctt 7441 taatagttgc caagttcacg aactatcttc aagcgactct atgaaacttt tgattctaca 7501 gttttcatca gaaattttta aaattatctt ccctcagctg gataaaattt attttgaaaa 7561 tcatcctttc aatctaaaaa atcaacctga aactttaaaa ttactcttac aagcggcttt 7621 aagttatttt gctgatgata agaataattc cttgcgtact cacggatata cttccctttt 7681 attagatcgc ttattaagta tttctgaata cagtatttta agcagttctg aacaaaataa 7741 attaatggat ctccaagagc gaatggagag aatttcttct tacattcatg aaaactacga 7801 ccataaaatt tctttagaaa tgattgcttc gcatgaagga ctttccagaa cgtatttttc 7861 ccatttcttt aaaagtaatt ttgggattaa tttcaacgag tatttaaata agattcgttc 7921 tgaaaaagca agaacattac tttcttcttc taaagataat ttattaaata ttgcttacat 7981 gtgtggtttc tcagatatca gaacgctcaa caccgctttt cttaaatctt atggtgttct 8041 accgaaggaa tttagaaaaa atagtgtact cttcccaaat ctcaactata tgactttcaa 8101 tcaagataaa attgataatc aagtttttta ttctgataga ggctcttttg atattttgca 8161 atattattta gaaaaaaact ttgaaaaaac aagtagtcat ttttag //