##gff-version 3
##sequence-region NC_011898 1 25834
# conversion-by bp_genbank2gff3.pl
# organism Ruminiclostridium cellulolyticum H10
# Note Ruminiclostridium cellulolyticum H10, complete sequence.
# date 04-FEB-2020
NC_011898	GenBank	region	1	25834	.	+	1	ID=NC_011898;Dbxref=BioProject:PRJNA224116,taxon:394503;Name=NC_011898;Note=Ruminiclostridium cellulolyticum H10%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,537 CDSs (total) :: 3,447 Genes (coding) :: 3,334 CDSs (with protein) :: 3,334 Genes (RNA) :: 90 rRNAs :: 8,8,8 (5S,16S,23S) complete rRNAs :: 8,8,8 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C537 CDSs (total) :: 3%2C447 Genes (coding) :: 3%2C334 CDSs (with protein) :: 3%2C334 Genes (RNA) :: 90 rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) complete rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;culture_collection=ATCC:35319;date=04-FEB-2020;mol_type=genomic DNA;organism=Ruminiclostridium cellulolyticum H10;strain=H10;type_material=type strain of Ruminiclostridium cellulolyticum
NC_011898	GenBank	pseudogenic_exon	1	3924	.	+	1	ID=CCEL_RS03695;Name=CCEL_RS03695;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014313401.1;old_locus_tag=Ccel_0728;product=cellulosome anchor protein;pseudo=_no_value;transl_table=11
NC_011898	GenBank	pseudogene	1	3924	.	+	1	ID=CCEL_RS03695.pseudogene;Alias=CCEL_RS03695;Name=CCEL_RS03695;old_locus_tag=Ccel_0728;pseudo=_no_value
NC_011898	GenBank	pseudogenic_exon	3937	4641	.	+	1	ID=CCEL_RS18230;Name=CCEL_RS18230;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020814339.1;product=cellulosome anchor protein;pseudo=_no_value;transl_table=11
NC_011898	GenBank	pseudogene	3937	4641	.	+	1	ID=CCEL_RS18230.pseudogene;Alias=CCEL_RS18230;Name=CCEL_RS18230;pseudo=_no_value
NC_011898	GenBank	gene	4758	6926	.	+	1	ID=CCEL_RS03700;Name=CCEL_RS03700;old_locus_tag=Ccel_0729
NC_011898	GenBank	mRNA	4758	6926	.	+	1	ID=CCEL_RS03700.t01;Parent=CCEL_RS03700
NC_011898	GenBank	CDS	4758	6926	.	+	1	ID=CCEL_RS03700.p01;Parent=CCEL_RS03700.t01;Name=CCEL_RS03700;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924275.1;old_locus_tag=Ccel_0729;product=endoglucanase;protein_id=WP_015924275.1;transl_table=11;translation=length.722
NC_011898	GenBank	exon	4758	6926	.	+	1	Parent=CCEL_RS03700.t01
NC_011898	GenBank	gene	7055	8437	.	+	1	ID=CCEL_RS03705;Name=CCEL_RS03705;old_locus_tag=Ccel_0730
NC_011898	GenBank	mRNA	7055	8437	.	+	1	ID=CCEL_RS03705.t01;Parent=CCEL_RS03705
NC_011898	GenBank	CDS	7055	8437	.	+	1	ID=CCEL_RS03705.p01;Parent=CCEL_RS03705.t01;Name=CCEL_RS03705;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020814341.1;old_locus_tag=Ccel_0730;product=endoglucanase;protein_id=WP_015924276.1;transl_table=11;translation=length.460
NC_011898	GenBank	exon	7055	8437	.	+	1	Parent=CCEL_RS03705.t01
NC_011898	GenBank	gene	8522	10699	.	+	1	ID=CCEL_RS03710;Name=CCEL_RS03710;old_locus_tag=Ccel_0731
NC_011898	GenBank	mRNA	8522	10699	.	+	1	ID=CCEL_RS03710.t01;Parent=CCEL_RS03710
NC_011898	GenBank	CDS	8522	10699	.	+	1	ID=CCEL_RS03710.p01;Parent=CCEL_RS03710.t01;Name=CCEL_RS03710;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014313404.1;old_locus_tag=Ccel_0731;product=endoglucanase;protein_id=WP_015924277.1;transl_table=11;translation=length.725
NC_011898	GenBank	exon	8522	10699	.	+	1	Parent=CCEL_RS03710.t01
NC_011898	GenBank	gene	10792	13449	.	+	1	ID=CCEL_RS03715;Name=CCEL_RS03715;old_locus_tag=Ccel_0732
NC_011898	GenBank	mRNA	10792	13449	.	+	1	ID=CCEL_RS03715.t01;Parent=CCEL_RS03715
NC_011898	GenBank	CDS	10792	13449	.	+	1	ID=CCEL_RS03715.p01;Parent=CCEL_RS03715.t01;Name=CCEL_RS03715;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924278.1;old_locus_tag=Ccel_0732;product=cellulase;protein_id=WP_015924278.1;transl_table=11;translation=length.885
NC_011898	GenBank	exon	10792	13449	.	+	1	Parent=CCEL_RS03715.t01
NC_011898	GenBank	gene	13618	14310	.	+	1	ID=CCEL_RS03720;Name=CCEL_RS03720;old_locus_tag=Ccel_0733
NC_011898	GenBank	mRNA	13618	14310	.	+	1	ID=CCEL_RS03720.t01;Parent=CCEL_RS03720
NC_011898	GenBank	CDS	13618	14310	.	+	1	ID=CCEL_RS03720.p01;Parent=CCEL_RS03720.t01;Name=CCEL_RS03720;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014313406.1;old_locus_tag=Ccel_0733;product=cohesin;protein_id=WP_015924279.1;transl_table=11;translation=length.230
NC_011898	GenBank	exon	13618	14310	.	+	1	Parent=CCEL_RS03720.t01
NC_011898	GenBank	gene	14337	16550	.	+	1	ID=CCEL_RS03725;Name=CCEL_RS03725;old_locus_tag=Ccel_0734
NC_011898	GenBank	mRNA	14337	16550	.	+	1	ID=CCEL_RS03725.t01;Parent=CCEL_RS03725
NC_011898	GenBank	CDS	14337	16550	.	+	1	ID=CCEL_RS03725.p01;Parent=CCEL_RS03725.t01;Name=CCEL_RS03725;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004622344.1;old_locus_tag=Ccel_0734;product=glycoside hydrolase;protein_id=WP_015924280.1;transl_table=11;translation=length.737
NC_011898	GenBank	exon	14337	16550	.	+	1	Parent=CCEL_RS03725.t01
NC_011898	GenBank	gene	16738	19011	.	+	1	ID=CCEL_RS03730;Name=CCEL_RS03730;old_locus_tag=Ccel_0735
NC_011898	GenBank	mRNA	16738	19011	.	+	1	ID=CCEL_RS03730.t01;Parent=CCEL_RS03730
NC_011898	GenBank	CDS	16738	19011	.	+	1	ID=CCEL_RS03730.p01;Parent=CCEL_RS03730.t01;Name=CCEL_RS03730;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020814346.1;old_locus_tag=Ccel_0735;product=glycosyl hydrolase;protein_id=WP_015924281.1;transl_table=11;translation=length.757
NC_011898	GenBank	exon	16738	19011	.	+	1	Parent=CCEL_RS03730.t01
NC_011898	GenBank	gene	19049	20323	.	+	1	ID=CCEL_RS03735;Name=CCEL_RS03735;old_locus_tag=Ccel_0736
NC_011898	GenBank	mRNA	19049	20323	.	+	1	ID=CCEL_RS03735.t01;Parent=CCEL_RS03735
NC_011898	GenBank	CDS	19049	20323	.	+	1	ID=CCEL_RS03735.p01;Parent=CCEL_RS03735.t01;Name=CCEL_RS03735;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924282.1;old_locus_tag=Ccel_0736;product=cellulosome protein dockerin type I;protein_id=WP_015924282.1;transl_table=11;translation=length.424
NC_011898	GenBank	exon	19049	20323	.	+	1	Parent=CCEL_RS03735.t01
NC_011898	GenBank	gene	20413	21993	.	+	1	ID=CCEL_RS03740;Name=CCEL_RS03740;old_locus_tag=Ccel_0737
NC_011898	GenBank	mRNA	20413	21993	.	+	1	ID=CCEL_RS03740.t01;Parent=CCEL_RS03740
NC_011898	GenBank	CDS	20413	21993	.	+	1	ID=CCEL_RS03740.p01;Parent=CCEL_RS03740.t01;Name=CCEL_RS03740;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014313410.1;old_locus_tag=Ccel_0737;product=glycoside hydrolase;protein_id=WP_015924283.1;transl_table=11;translation=length.526
NC_011898	GenBank	exon	20413	21993	.	+	1	Parent=CCEL_RS03740.t01
NC_011898	GenBank	gene	22010	22126	.	+	1	ID=CCEL_RS18235;Name=CCEL_RS18235;old_locus_tag=Ccel_0738
NC_011898	GenBank	mRNA	22010	22126	.	+	1	ID=CCEL_RS18235.t01;Parent=CCEL_RS18235
NC_011898	GenBank	CDS	22010	22126	.	+	1	ID=CCEL_RS18235.p01;Parent=CCEL_RS18235.t01;Name=CCEL_RS18235;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF012622.1;old_locus_tag=Ccel_0738;product=hypothetical protein;protein_id=WP_157668438.1;transl_table=11;translation=length.38
NC_011898	GenBank	exon	22010	22126	.	+	1	Parent=CCEL_RS18235.t01
NC_011898	GenBank	gene	22178	24190	.	+	1	ID=CCEL_RS03745;Name=CCEL_RS03745;old_locus_tag=Ccel_0739
NC_011898	GenBank	mRNA	22178	24190	.	+	1	ID=CCEL_RS03745.t01;Parent=CCEL_RS03745
NC_011898	GenBank	CDS	22178	24190	.	+	1	ID=CCEL_RS03745.p01;Parent=CCEL_RS03745.t01;Name=CCEL_RS03745;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013291638.1;old_locus_tag=Ccel_0739;product=hypothetical protein;protein_id=WP_049756855.1;transl_table=11;translation=length.670
NC_011898	GenBank	exon	22178	24190	.	+	1	Parent=CCEL_RS03745.t01
NC_011898	GenBank	gene	24230	25834	.	+	1	ID=CCEL_RS03750;Name=CCEL_RS03750;old_locus_tag=Ccel_0740
NC_011898	GenBank	mRNA	24230	25834	.	+	1	ID=CCEL_RS03750.t01;Parent=CCEL_RS03750
NC_011898	GenBank	CDS	24230	25834	.	+	1	ID=CCEL_RS03750.p01;Parent=CCEL_RS03750.t01;Name=CCEL_RS03750;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924285.1;old_locus_tag=Ccel_0740;product=cellulase family glycosylhydrolase;protein_id=WP_015924285.1;transl_table=11;translation=length.534
NC_011898	GenBank	exon	24230	25834	.	+	1	Parent=CCEL_RS03750.t01