##gff-version 3
##sequence-region CP007013 1 10378
# conversion-by bp_genbank2gff3.pl
# organism Thermotoga maritima MSB8
# Note Thermotoga maritima MSB8, complete genome.
# date 18-FEB-2015
CP007013	GenBank	region	1	10378	.	+	1	ID=CP007013;Dbxref=BioProject:PRJNA63051,taxon:243274;Name=CP007013;Note=Thermotoga maritima MSB8%2C complete genome.,URL -- http://www.jgi.doe.gov JGI Project ID: 403117 Source DNA and Organism available from Kenneth M. Noll (noll@uconn.edu) Source DNA available from Kenneth M. Noll (noll@uconn.edu) Organism available from Kenneth M. Noll (noll@uconn.edu) Contacts: Kenneth M. Noll (noll@uconn.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermotoga maritima MSB8,DSM 3109 collection_date :: 1982 lat_lon :: 38.3912 14.9676 country :: Italy num_replicons :: 1 ref_biomaterial :: DSM 3109,ATCC 43589 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe isol_growth_condt :: 10360571 assembly :: Newbler v. 2.3 finishing_strategy :: Level 6: Finished environment :: Mud sequencing_meth :: WGS GOLD Stamp ID :: Gi08995 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4,GenePRIMP Isolation Site :: anaerobic marine mud Isolation Comments :: isolated by Stetter Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454,Illumina GAii ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 12/19/2013 10:56:46 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set,GeneMarkS+ Annotation Software revision :: 2.3 (rev. 421815) Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes :: 1,932 CDS :: 1,872 Pseudo Genes :: 10 CRISPR Arrays :: 7 rRNAs :: 3 ( 5S,16S,23S ) tRNAs :: 46 ncRNA :: 1 Frameshifted Genes :: 5 ##Genome-Annotation-Data-END## ;comment1=URL -- http://www.jgi.doe.gov JGI Project ID: 403117 Source DNA and Organism available from Kenneth M. Noll (noll@uconn.edu) Source DNA available from Kenneth M. Noll (noll@uconn.edu) Organism available from Kenneth M. Noll (noll@uconn.edu) Contacts: Kenneth M. Noll (noll@uconn.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermotoga maritima MSB8%2C DSM 3109 collection_date :: 1982 lat_lon :: 38.3912 14.9676 country :: Italy num_replicons :: 1 ref_biomaterial :: DSM 3109%2C ATCC 43589 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe isol_growth_condt :: 10360571 assembly :: Newbler v. 2.3 finishing_strategy :: Level 6: Finished environment :: Mud sequencing_meth :: WGS GOLD Stamp ID :: Gi08995 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4%2C GenePRIMP Isolation Site :: anaerobic marine mud Isolation Comments :: isolated by Stetter Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454%3B Illumina GAii ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 12/19/2013 10:56:46 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set%3B GeneMarkS+ Annotation Software revision :: 2.3 (rev. 421815) Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes :: 1%2C932 CDS :: 1%2C872 Pseudo Genes :: 10 CRISPR Arrays :: 7 rRNAs :: 3 ( 5S%2C 16S%2C 23S ) tRNAs :: 46 ncRNA :: 1 Frameshifted Genes :: 5 ##Genome-Annotation-Data-END## ;culture_collection=DSM:3109;date=18-FEB-2015;isolation_source=anaerobic marine mud;mol_type=genomic DNA;organism=Thermotoga maritima MSB8;strain=MSB8;type_material=type strain of Thermotoga maritima
CP007013	GenBank	gene	1	1662	.	-	1	ID=THEMA_05005;Name=THEMA_05005
CP007013	GenBank	mRNA	1	1662	.	-	1	ID=THEMA_05005.t01;Parent=THEMA_05005
CP007013	GenBank	CDS	1	1662	.	-	1	ID=THEMA_05005.p01;Parent=THEMA_05005.t01;Name=THEMA_05005;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=EXISTENCE: similar to AA sequence:RefSeq:YP_001244559.1;product=alpha-amlyase;protein_id=AHD18270.1;transl_table=11;translation=length.553
CP007013	GenBank	exon	1	1662	.	-	1	Parent=THEMA_05005.t01
CP007013	GenBank	gene	1897	3075	.	+	1	ID=THEMA_05010;Name=THEMA_05010
CP007013	GenBank	mRNA	1897	3075	.	+	1	ID=THEMA_05010.t01;Parent=THEMA_05010
CP007013	GenBank	CDS	1897	3075	.	+	1	ID=THEMA_05010.p01;Parent=THEMA_05010.t01;Name=THEMA_05010;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=EXISTENCE: similar to AA sequence:RefSeq:NP_229009.1;product=sugar ABC transporter substrate-binding protein;protein_id=AHD18271.1;transl_table=11;translation=length.392
CP007013	GenBank	exon	1897	3075	.	+	1	Parent=THEMA_05010.t01
CP007013	GenBank	gene	3152	4885	.	+	1	ID=THEMA_05015;Name=THEMA_05015
CP007013	GenBank	mRNA	3152	4885	.	+	1	ID=THEMA_05015.t01;Parent=THEMA_05015
CP007013	GenBank	CDS	3152	4885	.	+	1	ID=THEMA_05015.p01;Parent=THEMA_05015.t01;Name=THEMA_05015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=EXISTENCE: similar to AA sequence:RefSeq:YP_001244561.1;product=maltose ABC transporter permease;protein_id=AHD18272.1;transl_table=11;translation=length.577
CP007013	GenBank	exon	3152	4885	.	+	1	Parent=THEMA_05015.t01
CP007013	GenBank	gene	4885	7383	.	+	1	ID=THEMA_05020;Name=THEMA_05020
CP007013	GenBank	mRNA	4885	7383	.	+	1	ID=THEMA_05020.t01;Parent=THEMA_05020
CP007013	GenBank	CDS	4885	7383	.	+	1	ID=THEMA_05020.p01;Parent=THEMA_05020.t01;Name=THEMA_05020;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=EXISTENCE: similar to AA sequence:RefSeq:ZP_10919534.1;product=maltose ABC transporter permease;protein_id=AHD18273.1;transl_table=11;translation=length.832
CP007013	GenBank	exon	4885	7383	.	+	1	Parent=THEMA_05020.t01
CP007013	GenBank	gene	7380	8801	.	+	1	ID=THEMA_05025;Name=THEMA_05025
CP007013	GenBank	mRNA	7380	8801	.	+	1	ID=THEMA_05025.t01;Parent=THEMA_05025
CP007013	GenBank	CDS	7380	8801	.	+	1	ID=THEMA_05025.p01;Parent=THEMA_05025.t01;Name=THEMA_05025;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=EXISTENCE: similar to AA sequence:RefSeq:NP_229632.1;product=cyclomaltodextrinase;protein_id=AHD18274.1;transl_table=11;translation=length.473
CP007013	GenBank	exon	7380	8801	.	+	1	Parent=THEMA_05025.t01
CP007013	GenBank	gene	8936	10378	.	+	1	ID=THEMA_05030;Name=THEMA_05030
CP007013	GenBank	mRNA	8936	10378	.	+	1	ID=THEMA_05030.t01;Parent=THEMA_05030
CP007013	GenBank	CDS	8936	10378	.	+	1	ID=THEMA_05030.p01;Parent=THEMA_05030.t01;Name=THEMA_05030;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=EXISTENCE: similar to AA sequence:SwissProt:O33830.2;product=alpha-glucosidase;protein_id=AHD18275.1;transl_table=11;translation=length.480
CP007013	GenBank	exon	8936	10378	.	+	1	Parent=THEMA_05030.t01