##gff-version 3
##sequence-region NC_013192 1 3976
# conversion-by bp_genbank2gff3.pl
# organism Leptotrichia buccalis C-1013-b
# Note Leptotrichia buccalis C-1013-b, complete sequence.
# date 13-FEB-2020
NC_013192	GenBank	region	1	3976	.	+	1	ID=NC_013192;Dbxref=BioProject:PRJNA224116,taxon:523794;Name=NC_013192;Note=Leptotrichia buccalis C-1013-b%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP001685. URL -- http://www.jgi.doe.gov JGI Project ID: 4082970 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Leptotrichia buccalis C-1013-b,DSM 1135 Culture Collection ID :: DSM 1135,ATCC 14201,JCM 12969,NCTC 10249 GOLD Stamp ID :: Gi02240 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Supragingival calculus Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Dental plaque Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Bacteremia,Cavitary pneumonia,Endocarditis,Septicemia Habitat :: Blood,Human oral microflora Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/13/2020 21:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 2,322 CDSs (total) :: 2,257 Genes (coding) :: 2,168 CDSs (with protein) :: 2,168 Genes (RNA) :: 65 rRNAs :: 5,5,5 (5S,16S,23S) complete rRNAs :: 5,5,5 (5S,16S,23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 89 CDSs (without protein) :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted) :: 56 of 89 Pseudo Genes (incomplete) :: 27 of 89 Pseudo Genes (internal stop) :: 26 of 89 Pseudo Genes (multiple problems) :: 19 of 89 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ,type strain of Leptotrichia buccalis DSM 1135;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP001685. URL -- http://www.jgi.doe.gov JGI Project ID: 4082970 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Leptotrichia buccalis C-1013-b%2C DSM 1135 Culture Collection ID :: DSM 1135%2C ATCC 14201%2C JCM 12969%2C NCTC 10249 GOLD Stamp ID :: Gi02240 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Supragingival calculus Host Name :: Homo sapiens Body Sample Site :: Oral Body Sample SubSite :: Dental plaque Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Bacteremia%2C Cavitary pneumonia%2C Endocarditis%2C Septicemia Habitat :: Blood%2C Human oral microflora Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/13/2020 21:28:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 2%2C322 CDSs (total) :: 2%2C257 Genes (coding) :: 2%2C168 CDSs (with protein) :: 2%2C168 Genes (RNA) :: 65 rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S) complete rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 89 CDSs (without protein) :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted) :: 56 of 89 Pseudo Genes (incomplete) :: 27 of 89 Pseudo Genes (internal stop) :: 26 of 89 Pseudo Genes (multiple problems) :: 19 of 89 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=13-FEB-2020;mol_type=genomic DNA;organism=Leptotrichia buccalis C-1013-b;strain=DSM 1135;type_material=type strain of Leptotrichia buccalis
NC_013192	GenBank	gene	1	1323	.	-	1	ID=LEBU_RS07530;Name=LEBU_RS07530;old_locus_tag=Lebu_1525
NC_013192	GenBank	mRNA	1	1323	.	-	1	ID=LEBU_RS07530.t01;Parent=LEBU_RS07530
NC_013192	GenBank	CDS	1	1323	.	-	1	ID=LEBU_RS07530.p01;Parent=LEBU_RS07530.t01;Name=LEBU_RS07530;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018449715.1;old_locus_tag=Lebu_1525;product=6-phospho-alpha-glucosidase;protein_id=WP_015769739.1;transl_table=11;translation=length.440
NC_013192	GenBank	exon	1	1323	.	-	1	Parent=LEBU_RS07530.t01
NC_013192	GenBank	gene	1550	2257	.	+	1	ID=LEBU_RS07535;Name=LEBU_RS07535;old_locus_tag=Lebu_1526
NC_013192	GenBank	mRNA	1550	2257	.	+	1	ID=LEBU_RS07535.t01;Parent=LEBU_RS07535
NC_013192	GenBank	CDS	1550	2257	.	+	1	ID=LEBU_RS07535.p01;Parent=LEBU_RS07535.t01;Name=LEBU_RS07535;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018449714.1;old_locus_tag=Lebu_1526;product=GntR family transcriptional regulator;protein_id=WP_015769740.1;transl_table=11;translation=length.235
NC_013192	GenBank	exon	1550	2257	.	+	1	Parent=LEBU_RS07535.t01
NC_013192	GenBank	gene	2387	3976	.	-	1	ID=LEBU_RS07540;Name=LEBU_RS07540;old_locus_tag=Lebu_1527
NC_013192	GenBank	mRNA	2387	3976	.	-	1	ID=LEBU_RS07540.t01;Parent=LEBU_RS07540
NC_013192	GenBank	CDS	2387	3976	.	-	1	ID=LEBU_RS07540.p01;Parent=LEBU_RS07540.t01;Name=LEBU_RS07540;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018497861.1;old_locus_tag=Lebu_1527;product=PTS transporter subunit EIIC;protein_id=WP_015769741.1;transl_table=11;translation=length.529
NC_013192	GenBank	exon	2387	3976	.	-	1	Parent=LEBU_RS07540.t01