##gff-version 3
##sequence-region ABJL02000008 1 60486
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides intestinalis DSM 17393
# Note Bacteroides intestinalis DSM 17393 B_intestinalis-2.0.1_Cont607, whole genome shotgun sequence.
# date 15-AUG-2012
ABJL02000008	GenBank	region	1	60486	.	+	1	ID=ABJL02000008;Dbxref=BioProject:PRJNA20523,taxon:471870;Name=ABJL02000008;Note=Bacteroides intestinalis DSM 17393 B_intestinalis-2.0.1_Cont607%2C whole genome shotgun sequence.,Bacteroides intestinalis (GenBank Accession Number for 16S rDNA gene: AB214328) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 17393). We have collected 7X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement(pre-finishing),along with manual improvement that includes breaking apart any mis-assembly,and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally,PCAP (Huang,et al,Genome Research,13:2164,(2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive,sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine,the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project,or any other GSC genome project,please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in June 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Product names were updated in August 2012. ;comment1=Bacteroides intestinalis (GenBank Accession Number for 16S rDNA gene: AB214328) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 17393). We have collected 7X coverage in plasmid end reads and 454 reads. We have performed one round of automated sequence improvement(pre-finishing)%2C along with manual improvement that includes breaking apart any mis-assembly%2C and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally%2C PCAP (Huang%2C et al%2C Genome Research%2C 13:2164%2C (2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive%2C sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine%2C the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project%2C or any other GSC genome project%2C please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in June 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Product names were updated in August 2012. ;date=15-AUG-2012;mol_type=genomic DNA;organism=Bacteroides intestinalis DSM 17393;strain=DSM 17393;type_material=type strain of Bacteroides intestinalis
ABJL02000008	GenBank	gene	1	4095	.	-	1	ID=BACINT_04193;Name=BACINT_04193
ABJL02000008	GenBank	mRNA	1	4095	.	-	1	ID=BACINT_04193.t01;Parent=BACINT_04193
ABJL02000008	GenBank	CDS	1	4095	.	-	1	ID=BACINT_04193.p01;Parent=BACINT_04193.t01;Dbxref=InterPro:IPR000005,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR008957,InterPro:IPR009057,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR011041,InterPro:IPR011123;Name=BACINT_04193;Note=KEGG: ana:all4963 6.1e-58 cyaC%3B adenylate cyclase carring two-component hybrid sensor and regulator domains%3B COG: COG0642 Signal transduction histidine kinase%3B Psort location: CytoplasmicMembrane%2C score: 10.00;codon_start=1;inference=protein motif:BlastProDom:IPR001789,protein motif:FPrintScan:IPR000005,protein motif:FPrintScan:IPR004358,protein motif:Gene3D:IPR003594,protein motif:HMMPfam:IPR000005,protein motif:HMMPfam:IPR001789,protein motif:HMMPfam:IPR003594,protein motif:HMMPfam:IPR003661,protein motif:HMMPfam:IPR011123,protein motif:HMMSmart:IPR000005,protein motif:HMMSmart:IPR001789,protein motif:HMMSmart:IPR003594,protein motif:HMMSmart:IPR003661,protein motif:ScanRegExp:IPR000005,protein motif:superfamily:IPR003594,protein motif:superfamily:IPR008957,protein motif:superfamily:IPR009057,protein motif:superfamily:IPR009082,protein motif:superfamily:IPR011006,protein motif:superfamily:IPR011041,similar to AA sequence:REFSEQ:YP_001297385.1;product=response regulator receiver domain protein;protein_id=EDV05050.1;transl_table=11;translation=length.1364
ABJL02000008	GenBank	exon	1	4095	.	-	1	Parent=BACINT_04193.t01
ABJL02000008	GenBank	gene	4858	7998	.	+	1	ID=BACINT_04194;Name=BACINT_04194
ABJL02000008	GenBank	mRNA	4858	7998	.	+	1	ID=BACINT_04194.t01;Parent=BACINT_04194
ABJL02000008	GenBank	CDS	4858	7998	.	+	1	ID=BACINT_04194.p01;Parent=BACINT_04194.t01;Dbxref=InterPro:IPR000531,InterPro:IPR008969,InterPro:IPR012910;Name=BACINT_04194;Note=COG: NOG06407 non supervised orthologous group%3B Psort location: OuterMembrane%2C score: 9.49;codon_start=1;inference=protein motif:Gene3D:IPR000531,protein motif:Gene3D:IPR012910,protein motif:HMMPfam:IPR000531,protein motif:HMMPfam:IPR012910,protein motif:superfamily:IPR008969,similar to AA sequence:REFSEQ:NP_812002.1;product=TonB-linked outer membrane protein%2C SusC/RagA family;protein_id=EDV05051.1;transl_table=11;translation=length.1046
ABJL02000008	GenBank	exon	4858	7998	.	+	1	Parent=BACINT_04194.t01
ABJL02000008	GenBank	gene	8018	9757	.	+	1	ID=BACINT_04195;Name=BACINT_04195
ABJL02000008	GenBank	mRNA	8018	9757	.	+	1	ID=BACINT_04195.t01;Parent=BACINT_04195
ABJL02000008	GenBank	CDS	8018	9757	.	+	1	ID=BACINT_04195.p01;Parent=BACINT_04195.t01;Dbxref=InterPro:IPR012944;Name=BACINT_04195;Note=COG: NOG31573 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR012944,similar to AA sequence:REFSEQ:YP_001196194.1;product=SusD family protein;protein_id=EDV05052.1;transl_table=11;translation=length.579
ABJL02000008	GenBank	exon	8018	9757	.	+	1	Parent=BACINT_04195.t01
ABJL02000008	GenBank	gene	9806	11173	.	+	1	ID=BACINT_04196;Name=BACINT_04196
ABJL02000008	GenBank	mRNA	9806	11173	.	+	1	ID=BACINT_04196.t01;Parent=BACINT_04196
ABJL02000008	GenBank	CDS	9806	11173	.	+	1	ID=BACINT_04196.p01;Parent=BACINT_04196.t01;Dbxref=InterPro:IPR014756;Name=BACINT_04196;codon_start=1;inference=protein motif:superfamily:IPR014756;product=hypothetical protein;protein_id=EDV05053.1;transl_table=11;translation=length.455
ABJL02000008	GenBank	exon	9806	11173	.	+	1	Parent=BACINT_04196.t01
ABJL02000008	GenBank	gene	11220	13568	.	+	1	ID=BACINT_04197;Name=BACINT_04197
ABJL02000008	GenBank	mRNA	11220	13568	.	+	1	ID=BACINT_04197.t01;Parent=BACINT_04197
ABJL02000008	GenBank	CDS	11220	13568	.	+	1	ID=BACINT_04197.p01;Parent=BACINT_04197.t01;Dbxref=InterPro:IPR001000,InterPro:IPR001547,InterPro:IPR003305,InterPro:IPR008979,InterPro:IPR013781;Name=BACINT_04197;Note=KEGG: bha:BH2120 8.3e-23 alkaline xylanase A (1%2C4-beta-D-xylan xylanohydrolase) K01181%3B COG: COG3693 Beta-1%2C4-xylanase;codon_start=1;inference=protein motif:Gene3D:IPR013781,protein motif:HMMPfam:IPR001000,protein motif:HMMPfam:IPR003305,protein motif:HMMSmart:IPR001000,protein motif:ScanRegExp:IPR001000,protein motif:ScanRegExp:IPR001547,protein motif:superfamily:IPR008979,similar to AA sequence:INSD:CAB01855.1;product=glycosyl hydrolase family 10;protein_id=EDV05054.1;transl_table=11;translation=length.782
ABJL02000008	GenBank	exon	11220	13568	.	+	1	Parent=BACINT_04197.t01
ABJL02000008	GenBank	gene	13623	13745	.	-	1	ID=BACINT_04198;Name=BACINT_04198
ABJL02000008	GenBank	mRNA	13623	13745	.	-	1	ID=BACINT_04198.t01;Parent=BACINT_04198
ABJL02000008	GenBank	CDS	13623	13745	.	-	1	ID=BACINT_04198.p01;Parent=BACINT_04198.t01;Name=BACINT_04198;codon_start=1;product=hypothetical protein;protein_id=EDV05055.1;transl_table=11;translation=length.40
ABJL02000008	GenBank	exon	13623	13745	.	-	1	Parent=BACINT_04198.t01
ABJL02000008	GenBank	gene	13788	15536	.	+	1	ID=BACINT_04199;Name=BACINT_04199
ABJL02000008	GenBank	mRNA	13788	15536	.	+	1	ID=BACINT_04199.t01;Parent=BACINT_04199
ABJL02000008	GenBank	CDS	13788	15536	.	+	1	ID=BACINT_04199.p01;Parent=BACINT_04199.t01;Dbxref=InterPro:IPR001944,InterPro:IPR013781;Name=BACINT_04199;Note=KEGG: xcc:XCC2895 1.9e-09 bga%3B beta-galactosidase K01190%3B COG: COG1874 Beta-galactosidase;codon_start=1;inference=protein motif:Gene3D:IPR013781,protein motif:HMMPfam:IPR001944;product=glycosyl hydrolase family 35;protein_id=EDV05056.1;transl_table=11;translation=length.582
ABJL02000008	GenBank	exon	13788	15536	.	+	1	Parent=BACINT_04199.t01
ABJL02000008	GenBank	gene	15574	17244	.	+	1	ID=BACINT_04200;Name=BACINT_04200
ABJL02000008	GenBank	mRNA	15574	17244	.	+	1	ID=BACINT_04200.t01;Parent=BACINT_04200
ABJL02000008	GenBank	CDS	15574	17244	.	+	1	ID=BACINT_04200.p01;Parent=BACINT_04200.t01;Dbxref=InterPro:IPR005181,InterPro:IPR006104,InterPro:IPR008979;Name=BACINT_04200;Note=KEGG: xac:XAC4228 5.7e-74 sialic acid-specific 9-O-acetylesterase%3B COG: NOG04984 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR005181,protein motif:HMMPfam:IPR006104,protein motif:superfamily:IPR008979,similar to AA sequence:REFSEQ:YP_001297380.1;product=glycosyl hydrolase family 2%2C sugar binding domain protein;protein_id=EDV05057.1;transl_table=11;translation=length.556
ABJL02000008	GenBank	exon	15574	17244	.	+	1	Parent=BACINT_04200.t01
ABJL02000008	GenBank	gene	17318	18814	.	+	1	ID=BACINT_04201;Name=BACINT_04201
ABJL02000008	GenBank	mRNA	17318	18814	.	+	1	ID=BACINT_04201.t01;Parent=BACINT_04201
ABJL02000008	GenBank	CDS	17318	18814	.	+	1	ID=BACINT_04201.p01;Parent=BACINT_04201.t01;Dbxref=InterPro:IPR001927,InterPro:IPR011701;Name=BACINT_04201;Note=KEGG: eci:UTI89_C4210 5.4e-69 yicJ%3B hypothetical symporter YicJ K03292%3B COG: COG2211 Na+/melibiose symporter and related transporters%3B Psort location: CytoplasmicMembrane%2C score: 10.00;codon_start=1;inference=protein motif:HMMPfam:IPR011701,protein motif:HMMTigr:IPR001927,similar to AA sequence:REFSEQ:YP_001297395.1;product=transporter%2C major facilitator family protein;protein_id=EDV05058.1;transl_table=11;translation=length.498
ABJL02000008	GenBank	exon	17318	18814	.	+	1	Parent=BACINT_04201.t01
ABJL02000008	GenBank	gene	18830	21562	.	+	1	ID=BACINT_04202;Name=BACINT_04202
ABJL02000008	GenBank	mRNA	18830	21562	.	+	1	ID=BACINT_04202.t01;Parent=BACINT_04202
ABJL02000008	GenBank	CDS	18830	21562	.	+	1	ID=BACINT_04202.p01;Parent=BACINT_04202.t01;Dbxref=InterPro:IPR001000,InterPro:IPR006710,InterPro:IPR013781;Name=BACINT_04202;Note=KEGG: sde:Sde_1655 1.3e-124 translation initiation factor IF-1 K01209%3B COG: COG3507 Beta-xylosidase;codon_start=1;inference=protein motif:FPrintScan:IPR001000,protein motif:Gene3D:IPR013781,protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR001000,protein motif:HMMPfam:IPR006710,protein motif:HMMSmart:IPR001000,similar to AA sequence:REFSEQ:YP_001297393.1;product=glycosyl hydrolase family 10;protein_id=EDV05059.1;transl_table=11;translation=length.910
ABJL02000008	GenBank	exon	18830	21562	.	+	1	Parent=BACINT_04202.t01
ABJL02000008	GenBank	gene	21582	22559	.	+	1	ID=BACINT_04203;Name=BACINT_04203
ABJL02000008	GenBank	mRNA	21582	22559	.	+	1	ID=BACINT_04203.t01;Parent=BACINT_04203
ABJL02000008	GenBank	CDS	21582	22559	.	+	1	ID=BACINT_04203.p01;Parent=BACINT_04203.t01;Dbxref=InterPro:IPR006710;Name=BACINT_04203;Note=KEGG: sde:Sde_0822 8.1e-114 alpha-L-arabinofuranosidase K01209%3B COG: NOG06229 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR006710;product=glycosyl hydrolase%2C family 43;protein_id=EDV05060.1;transl_table=11;translation=length.325
ABJL02000008	GenBank	exon	21582	22559	.	+	1	Parent=BACINT_04203.t01
ABJL02000008	GenBank	gene	22577	23557	.	+	1	ID=BACINT_04204;Name=BACINT_04204
ABJL02000008	GenBank	mRNA	22577	23557	.	+	1	ID=BACINT_04204.t01;Parent=BACINT_04204
ABJL02000008	GenBank	CDS	22577	23557	.	+	1	ID=BACINT_04204.p01;Parent=BACINT_04204.t01;Dbxref=InterPro:IPR000683,InterPro:IPR004104;Name=BACINT_04204;Note=KEGG: lsa:LSA1559 5.9e-40 putative oxidoreductase%3B COG: COG0673 Predicted dehydrogenases and related proteins;codon_start=1;inference=protein motif:HMMPfam:IPR000683,protein motif:HMMPfam:IPR004104,similar to AA sequence:REFSEQ:YP_001558220.1;product=oxidoreductase%2C NAD-binding domain protein;protein_id=EDV05061.1;transl_table=11;translation=length.326
ABJL02000008	GenBank	exon	22577	23557	.	+	1	Parent=BACINT_04204.t01
ABJL02000008	GenBank	gene	23579	25609	.	+	1	ID=BACINT_04205;Name=BACINT_04205
ABJL02000008	GenBank	mRNA	23579	25609	.	+	1	ID=BACINT_04205.t01;Parent=BACINT_04205
ABJL02000008	GenBank	CDS	23579	25609	.	+	1	ID=BACINT_04205.p01;Parent=BACINT_04205.t01;Dbxref=InterPro:IPR011099,InterPro:IPR011100,InterPro:IPR011395,InterPro:IPR013781;Name=BACINT_04205;Note=KEGG: xac:XAC4227 3.7e-180 aguA%3B alpha-glucuronidase K01235%3B COG: COG3661 Alpha-glucuronidase;codon_start=1;inference=protein motif:Gene3D:IPR011099,protein motif:Gene3D:IPR013781,protein motif:HMMPfam:IPR011099,protein motif:HMMPfam:IPR011100,protein motif:HMMPIR:IPR011395,similar to AA sequence:REFSEQ:YP_001297381.1;product=glycosyl hydrolase family 67 middle domain protein;protein_id=EDV05062.1;transl_table=11;translation=length.676
ABJL02000008	GenBank	exon	23579	25609	.	+	1	Parent=BACINT_04205.t01
ABJL02000008	GenBank	gene	25624	25851	.	-	1	ID=BACINT_04207;Name=BACINT_04207
ABJL02000008	GenBank	mRNA	25624	25851	.	-	1	ID=BACINT_04207.t01;Parent=BACINT_04207
ABJL02000008	GenBank	CDS	25624	25851	.	-	1	ID=BACINT_04207.p01;Parent=BACINT_04207.t01;Name=BACINT_04207;codon_start=1;product=hypothetical protein;protein_id=EDV05064.1;transl_table=11;translation=length.75
ABJL02000008	GenBank	exon	25624	25851	.	-	1	Parent=BACINT_04207.t01
ABJL02000008	GenBank	gene	25850	26908	.	+	1	ID=BACINT_04206;Name=BACINT_04206
ABJL02000008	GenBank	mRNA	25850	26908	.	+	1	ID=BACINT_04206.t01;Parent=BACINT_04206
ABJL02000008	GenBank	CDS	25850	26908	.	+	1	ID=BACINT_04206.p01;Parent=BACINT_04206.t01;Dbxref=InterPro:IPR005077;Name=BACINT_04206;Note=COG: NOG17651 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR005077;product=hypothetical protein;protein_id=EDV05063.1;transl_table=11;translation=length.352
ABJL02000008	GenBank	exon	25850	26908	.	+	1	Parent=BACINT_04206.t01
ABJL02000008	GenBank	gene	27236	31231	.	+	1	ID=BACINT_04208;Name=BACINT_04208
ABJL02000008	GenBank	mRNA	27236	31231	.	+	1	ID=BACINT_04208.t01;Parent=BACINT_04208
ABJL02000008	GenBank	CDS	27236	31231	.	+	1	ID=BACINT_04208.p01;Parent=BACINT_04208.t01;Dbxref=InterPro:IPR000005,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR009057,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR011041,InterPro:IPR011044,InterPro:IPR011110,InterPro:IPR011123,InterPro:IPR012287;Name=BACINT_04208;Note=KEGG: ava:Ava_2239 6.2e-58 adenylate/guanylate cyclase K01768%3B COG: COG0642 Signal transduction histidine kinase%3B Psort location: CytoplasmicMembrane%2C score: 9.82;codon_start=1;inference=protein motif:BlastProDom:IPR001789,protein motif:FPrintScan:IPR000005,protein motif:FPrintScan:IPR004358,protein motif:Gene3D:IPR003594,protein motif:Gene3D:IPR012287,protein motif:HMMPfam:IPR000005,protein motif:HMMPfam:IPR001789,protein motif:HMMPfam:IPR003594,protein motif:HMMPfam:IPR003661,protein motif:HMMPfam:IPR011110,protein motif:HMMPfam:IPR011123,protein motif:HMMSmart:IPR000005,protein motif:HMMSmart:IPR001789,protein motif:HMMSmart:IPR003594,protein motif:HMMSmart:IPR003661,protein motif:ScanRegExp:IPR000005,protein motif:superfamily:IPR003594,protein motif:superfamily:IPR009057,protein motif:superfamily:IPR009082,protein motif:superfamily:IPR011006,protein motif:superfamily:IPR011041,protein motif:superfamily:IPR011044,similar to AA sequence:REFSEQ:YP_001297385.1;product=ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein;protein_id=EDV05065.1;transl_table=11;translation=length.1331
ABJL02000008	GenBank	exon	27236	31231	.	+	1	Parent=BACINT_04208.t01
ABJL02000008	GenBank	gene	31313	32974	.	-	1	ID=BACINT_04209;Name=BACINT_04209
ABJL02000008	GenBank	mRNA	31313	32974	.	-	1	ID=BACINT_04209.t01;Parent=BACINT_04209
ABJL02000008	GenBank	CDS	31313	32974	.	-	1	ID=BACINT_04209.p01;Parent=BACINT_04209.t01;Dbxref=InterPro:IPR002559;Name=BACINT_04209;Note=COG: COG3666 Transposase and inactivated derivatives%3B Psort location: Cytoplasmic%2C score: 8.96;codon_start=1;inference=protein motif:HMMPfam:IPR002559,similar to AA sequence:REFSEQ:NP_810893.1;product=putative transposase%2C IS4 family;protein_id=EDV05066.1;transl_table=11;translation=length.553
ABJL02000008	GenBank	exon	31313	32974	.	-	1	Parent=BACINT_04209.t01
ABJL02000008	GenBank	gene	33147	34403	.	-	1	ID=BACINT_04210;Name=BACINT_04210
ABJL02000008	GenBank	mRNA	33147	34403	.	-	1	ID=BACINT_04210.t01;Parent=BACINT_04210
ABJL02000008	GenBank	CDS	33147	34403	.	-	1	ID=BACINT_04210.p01;Parent=BACINT_04210.t01;Dbxref=InterPro:IPR002037,InterPro:IPR008928,InterPro:IPR012341;Name=BACINT_04210;Note=KEGG: chu:CHU_1240 3.5e-102 CHU large protein%3B candidate bifunctional xylanase/esterase%3B CBM9 module%2C glycoside hydrolase family 8 protein and carbohydrate esterase family 4 protein K01238%3B COG: COG3405 Endoglucanase Y;codon_start=1;inference=protein motif:FPrintScan:IPR002037,protein motif:Gene3D:IPR012341,protein motif:HMMPfam:IPR002037,protein motif:superfamily:IPR008928,similar to AA sequence:REFSEQ:YP_677852.1;product=glycosyl hydrolase family 8;protein_id=EDV05067.1;transl_table=11;translation=length.418
ABJL02000008	GenBank	exon	33147	34403	.	-	1	Parent=BACINT_04210.t01
ABJL02000008	GenBank	gene	34442	37627	.	-	1	ID=BACINT_04211;Name=BACINT_04211
ABJL02000008	GenBank	mRNA	34442	37627	.	-	1	ID=BACINT_04211.t01;Parent=BACINT_04211
ABJL02000008	GenBank	CDS	34442	37627	.	-	1	ID=BACINT_04211.p01;Parent=BACINT_04211.t01;Dbxref=InterPro:IPR000595,InterPro:IPR005181,InterPro:IPR008902,InterPro:IPR008928;Name=BACINT_04211;Note=KEGG: chu:CHU_1239 3.5e-85 CHU large protein%3B candidate bifunctional acetylxylan esterase/xylanase%2C CBM4 module%2C glycoside hydrolase family 10 protein and carbohydrate esterase family 6 protein%3B COG: NOG04001 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR005181,protein motif:HMMPfam:IPR008902,protein motif:superfamily:IPR000595,protein motif:superfamily:IPR008928,similar to AA sequence:REFSEQ:YP_001300239.1;product=hypothetical protein;protein_id=EDV05068.1;transl_table=11;translation=length.1061
ABJL02000008	GenBank	exon	34442	37627	.	-	1	Parent=BACINT_04211.t01
ABJL02000008	GenBank	gene	37692	38576	.	-	1	ID=BACINT_04212;Name=BACINT_04212
ABJL02000008	GenBank	mRNA	37692	38576	.	-	1	ID=BACINT_04212.t01;Parent=BACINT_04212
ABJL02000008	GenBank	CDS	37692	38576	.	-	1	ID=BACINT_04212.p01;Parent=BACINT_04212.t01;Dbxref=InterPro:IPR000801;Name=BACINT_04212;Note=KEGG: bxe:Bxe_B2109 4.0e-25 putative esterase K01066%3B COG: COG0627 Predicted esterase;codon_start=1;inference=protein motif:HMMPfam:IPR000801,similar to AA sequence:REFSEQ:NP_812988.1;product=putative esterase;protein_id=EDV05069.1;transl_table=11;translation=length.294
ABJL02000008	GenBank	exon	37692	38576	.	-	1	Parent=BACINT_04212.t01
ABJL02000008	GenBank	gene	38795	40777	.	-	1	ID=BACINT_04213;Name=BACINT_04213
ABJL02000008	GenBank	mRNA	38795	40777	.	-	1	ID=BACINT_04213.t01;Parent=BACINT_04213
ABJL02000008	GenBank	CDS	38795	40777	.	-	1	ID=BACINT_04213.p01;Parent=BACINT_04213.t01;Dbxref=InterPro:IPR001547,InterPro:IPR003343,InterPro:IPR008964,InterPro:IPR013781;Name=BACINT_04213;Note=COG: NOG23557 non supervised orthologous group;codon_start=1;inference=protein motif:Gene3D:IPR013781,protein motif:HMMPfam:IPR003343,protein motif:HMMSmart:IPR003343,protein motif:ScanRegExp:IPR001547,protein motif:superfamily:IPR008964,similar to AA sequence:INSD:BAF49076.1;product=bacterial group 2 Ig-like protein;protein_id=EDV05070.1;transl_table=11;translation=length.660
ABJL02000008	GenBank	exon	38795	40777	.	-	1	Parent=BACINT_04213.t01
ABJL02000008	GenBank	gene	41092	41832	.	-	1	ID=BACINT_04214;Name=BACINT_04214
ABJL02000008	GenBank	mRNA	41092	41832	.	-	1	ID=BACINT_04214.t01;Parent=BACINT_04214
ABJL02000008	GenBank	CDS	41092	41832	.	-	1	ID=BACINT_04214.p01;Parent=BACINT_04214.t01;Name=BACINT_04214;Note=Psort location: OuterMembrane%2C score: 9.52;codon_start=1;product=hypothetical protein;protein_id=EDV05071.1;transl_table=11;translation=length.246
ABJL02000008	GenBank	exon	41092	41832	.	-	1	Parent=BACINT_04214.t01
ABJL02000008	GenBank	gene	41910	44150	.	-	1	ID=BACINT_04215;Name=BACINT_04215
ABJL02000008	GenBank	mRNA	41910	44150	.	-	1	ID=BACINT_04215.t01;Parent=BACINT_04215
ABJL02000008	GenBank	CDS	41910	44150	.	-	1	ID=BACINT_04215.p01;Parent=BACINT_04215.t01;Dbxref=InterPro:IPR001000,InterPro:IPR003305,InterPro:IPR008979,InterPro:IPR013781;Name=BACINT_04215;Note=KEGG: tma:TM0061 3.3e-13 endo-1%2C4-beta-xylanase A K01181%3B COG: COG3693 Beta-1%2C4-xylanase;codon_start=1;inference=protein motif:Gene3D:IPR013781,protein motif:HMMPfam:IPR001000,protein motif:HMMPfam:IPR003305,protein motif:HMMSmart:IPR001000,protein motif:ScanRegExp:IPR001000,protein motif:superfamily:IPR008979,similar to AA sequence:INSD:AAB81559.1;product=putative glycosyl hydrolase family 10;protein_id=EDV05072.1;transl_table=11;translation=length.746
ABJL02000008	GenBank	exon	41910	44150	.	-	1	Parent=BACINT_04215.t01
ABJL02000008	GenBank	gene	44184	45218	.	-	1	ID=BACINT_04216;Name=BACINT_04216
ABJL02000008	GenBank	mRNA	44184	45218	.	-	1	ID=BACINT_04216.t01;Parent=BACINT_04216
ABJL02000008	GenBank	CDS	44184	45218	.	-	1	ID=BACINT_04216.p01;Parent=BACINT_04216.t01;Name=BACINT_04216;codon_start=1;product=hypothetical protein;protein_id=EDV05073.1;transl_table=11;translation=length.344
ABJL02000008	GenBank	exon	44184	45218	.	-	1	Parent=BACINT_04216.t01
ABJL02000008	GenBank	gene	45252	47057	.	-	1	ID=BACINT_04217;Name=BACINT_04217
ABJL02000008	GenBank	mRNA	45252	47057	.	-	1	ID=BACINT_04217.t01;Parent=BACINT_04217
ABJL02000008	GenBank	CDS	45252	47057	.	-	1	ID=BACINT_04217.p01;Parent=BACINT_04217.t01;Dbxref=InterPro:IPR012944;Name=BACINT_04217;codon_start=1;inference=protein motif:HMMPfam:IPR012944,similar to AA sequence:REFSEQ:NP_813000.1;product=SusD family protein;protein_id=EDV05074.1;transl_table=11;translation=length.601
ABJL02000008	GenBank	exon	45252	47057	.	-	1	Parent=BACINT_04217.t01
ABJL02000008	GenBank	gene	47102	49930	.	-	1	ID=BACINT_04218;Name=BACINT_04218
ABJL02000008	GenBank	mRNA	47102	49930	.	-	1	ID=BACINT_04218.t01;Parent=BACINT_04218
ABJL02000008	GenBank	CDS	47102	49930	.	-	1	ID=BACINT_04218.p01;Parent=BACINT_04218.t01;Dbxref=InterPro:IPR000531,InterPro:IPR012910;Name=BACINT_04218;Note=Psort location: OuterMembrane%2C score: 9.52;codon_start=1;inference=protein motif:Gene3D:IPR012910,protein motif:HMMPfam:IPR000531,similar to AA sequence:REFSEQ:NP_809277.1;product=TonB-linked outer membrane protein%2C SusC/RagA family;protein_id=EDV05075.1;transl_table=11;translation=length.942
ABJL02000008	GenBank	exon	47102	49930	.	-	1	Parent=BACINT_04218.t01
ABJL02000008	GenBank	gene	49960	51822	.	-	1	ID=BACINT_04219;Name=BACINT_04219
ABJL02000008	GenBank	mRNA	49960	51822	.	-	1	ID=BACINT_04219.t01;Parent=BACINT_04219
ABJL02000008	GenBank	CDS	49960	51822	.	-	1	ID=BACINT_04219.p01;Parent=BACINT_04219.t01;Dbxref=InterPro:IPR012944;Name=BACINT_04219;codon_start=1;inference=protein motif:HMMPfam:IPR012944;product=SusD family protein;protein_id=EDV05076.1;transl_table=11;translation=length.620
ABJL02000008	GenBank	exon	49960	51822	.	-	1	Parent=BACINT_04219.t01
ABJL02000008	GenBank	gene	51835	54978	.	-	1	ID=BACINT_04220;Name=BACINT_04220
ABJL02000008	GenBank	mRNA	51835	54978	.	-	1	ID=BACINT_04220.t01;Parent=BACINT_04220
ABJL02000008	GenBank	CDS	51835	54978	.	-	1	ID=BACINT_04220.p01;Parent=BACINT_04220.t01;Dbxref=InterPro:IPR000531,InterPro:IPR008969,InterPro:IPR012910;Name=BACINT_04220;Note=COG: NOG25695 non supervised orthologous group%3B Psort location: OuterMembrane%2C score: 9.52;codon_start=1;inference=protein motif:Gene3D:IPR012910,protein motif:HMMPfam:IPR000531,protein motif:HMMPfam:IPR012910,protein motif:superfamily:IPR008969,similar to AA sequence:REFSEQ:NP_811730.1;product=TonB-linked outer membrane protein%2C SusC/RagA family;protein_id=EDV05077.1;transl_table=11;translation=length.1047
ABJL02000008	GenBank	exon	51835	54978	.	-	1	Parent=BACINT_04220.t01
ABJL02000008	GenBank	gene	55797	55955	.	+	1	ID=BACINT_04221;Name=BACINT_04221
ABJL02000008	GenBank	mRNA	55797	55955	.	+	1	ID=BACINT_04221.t01;Parent=BACINT_04221
ABJL02000008	GenBank	CDS	55797	55955	.	+	1	ID=BACINT_04221.p01;Parent=BACINT_04221.t01;Name=BACINT_04221;codon_start=1;product=hypothetical protein;protein_id=EDV05078.1;transl_table=11;translation=length.52
ABJL02000008	GenBank	exon	55797	55955	.	+	1	Parent=BACINT_04221.t01
ABJL02000008	GenBank	gene	55992	57917	.	-	1	ID=BACINT_04222;Name=BACINT_04222
ABJL02000008	GenBank	mRNA	55992	57917	.	-	1	ID=BACINT_04222.t01;Parent=BACINT_04222
ABJL02000008	GenBank	CDS	55992	57917	.	-	1	ID=BACINT_04222.p01;Parent=BACINT_04222.t01;Dbxref=InterPro:IPR005181,InterPro:IPR006104,InterPro:IPR008979;Name=BACINT_04222;Note=KEGG: xac:XAC1771 1.8e-102 sialic acid-specific 9-O-acetylesterase%3B COG: NOG04984 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR005181,protein motif:HMMPfam:IPR006104,protein motif:superfamily:IPR008979,similar to AA sequence:REFSEQ:YP_001297380.1;product=glycosyl hydrolase family 2%2C sugar binding domain protein;protein_id=EDV05079.1;transl_table=11;translation=length.641
ABJL02000008	GenBank	exon	55992	57917	.	-	1	Parent=BACINT_04222.t01
ABJL02000008	GenBank	gene	57940	60486	.	-	1	ID=BACINT_04223;Name=BACINT_04223
ABJL02000008	GenBank	mRNA	57940	60486	.	-	1	ID=BACINT_04223.t01;Parent=BACINT_04223
ABJL02000008	GenBank	CDS	57940	60486	.	-	1	ID=BACINT_04223.p01;Parent=BACINT_04223.t01;Name=BACINT_04223;Note=COG: NOG06097 non supervised orthologous group;codon_start=1;product=hypothetical protein;protein_id=EDV05080.1;transl_table=11;translation=length.848
ABJL02000008	GenBank	exon	57940	60486	.	-	1	Parent=BACINT_04223.t01