LOCUS CP000303 6197 bp DNA linear BCT 31-JAN-2014 DEFINITION Bifidobacterium breve UCC2003, complete genome. ACCESSION CP000303 VERSION CP000303.1 DBLINK BioProject: PRJNA13487 BioSample: SAMN02604112 KEYWORDS . SOURCE Bifidobacterium breve UCC2003 ORGANISM Bifidobacterium breve UCC2003 Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 6197) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S.C., Reunanen,J., Bottacini,F., Claesson,M.J., O'Brien,F., Flynn,K., Casey,P.G., Moreno Munoz,J.A., Kearney,B., Houston,A.M., O'Mahony,C., Higgins,D.G., Shanahan,F., Palva,A., de Vos,W.M., Fitzgerald,G.F., Ventura,M., O'Toole,P.W. and van Sinderen,D. TITLE Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor JOURNAL Proc. Natl. Acad. Sci. U.S.A. (2011) In press PUBMED 21690406 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 6197) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S., Reunanen,J., Bottacini,F., Claesson,M., O'Brien,F., O'Flynn,K., Casey,P., Moreno-Munoz,J., Higgins,D.G., Shanahan,F., de Vos,W., Fitzgerald,G.F., Ventura,M., O'Toole,P. and van Sinderen,D. TITLE Direct Submission JOURNAL Submitted (27-MAR-2006) Department of Microbiology, Alimentary Pharmabiotic Centre, University College Cork, College Road, Cork, Munster, Ireland COMMENT Source DNA or strain is available from Douwe van Sinderen, d.vansinderen@ucc.ie. FEATURES Location/Qualifiers source 1..6197 /organism="Bifidobacterium breve UCC2003" /mol_type="genomic DNA" /strain="UCC2003" /db_xref="taxon:326426" gene complement(1..1482) /gene="lacS" /locus_tag="Bbr_1551" CDS complement(1..1482) /gene="lacS" /locus_tag="Bbr_1551" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X761|2.A.2.2.3" /protein_id="ABE96222.1" /translation="MSGSTTQRMATSEQPHATPSGNMGQKIAYAFGNLGQAAFYNTMST FFITFVTTALFIDVDKTLAKRLIAVITGLIVVIRIAEIFLDPLLGNLVDNTNTRWGRFR PWQFIGGIVPGILLIMVFTGLFGLVDVNTGVFMVLFVIVFILLDVIYSLRDISYWGMIP AISSDSHERSTYTALGAFTGSIGYNGVTVIVVPVVSWFTWKFTGQWEQGRTGWAAFAII IAVLGLLTAWSVAFGTRENQGELRAKAEANGNPIEAFKAIAQNDQLLWVALSYLLYSVA NVATTGVLFYQFKYVLGAPDSFSIAGVIPVITGLVTTPLYPVLNRRIPRRWLYTAGMAL MIAGYTLFIIAPMNLPVVIVALVLFYLPAQTIQMTAILSMTDSIEYGQLKTGKRNEAVT LSVRPMLDKIAGALSNGIVGFVVVAAGMVGNATAADMTAANIRTFKTCAYYLPLAGIVA SLVVFLLAVKIDENMHDHIVEQLEERFASEETDKQ" gene 1850..4987 /gene="lacZ6" /locus_tag="Bbr_1552" CDS 1850..4987 /gene="lacZ6" /locus_tag="Bbr_1552" /EC_number="3.2.1.23" /codon_start=1 /transl_table=11 /product="GH2" /protein_id="ABE96223.1" /translation="MNTTDDQLKNGDPIVSPSMPTTAWLTDPRVYAVHRLDAHSDHACW SHAPVNGEGSDLGQSLDGEWRVRVETAPTGRFPDGTSDVSPLFAASDFDDSSFSRVQVP SHLETAGLLAPQYVNVQYPWDGHEDPEAPAIPEHGHVAVYRREFDADGEVAQAVREGRP VTLTFQGAATAIYVWLNGSFVGYAEDSFTPSEFDVTDAIKMEGNVLAVACYEYSSASWL EDQDFWRLHGLFRSVELNARPSAHVADIHADTDWDPATSRGSLSLDILVDGTPNAATAD LVLRDKNGTTVWHTSTEATGTLHAEAEIDGASPWSAERPDLYTLSVALLDADGRILEIA RTRIGFRRVSIEDGILKLNGKRLVFRGVNRHEFDCRRGRAITEEDMLWDIRFMKRHNIN AVRTSHYPNQSRWYELCDEYGIYLIDETNLETHGSWNSPGDIPVGTSVPGDDEAWLGAC IDRLDSMIMRDRNHPSVLIWSLGNESYAGEVLKAMSAHAHRLDPGRPVHYEGVNWNHAY DEISDFESRMYAKPAEIRDWLEHGDERGEASKPFVSCEYMHAMGNSCGGLSEFIDLERY ERYSGGFIWDYIDQGLVQRLPDGCERLSVGGDWGDRPTDYEFVGNGIVFADRTPSPKAQ EVKQLYSPVKLTPDGHGVTIENRNLFANTDGYVFAARLLEDGREIWHADYRFDVAAGDT QHHDIAFPDIDSDEGTREVTYEVDLLLAEATAWAPAGYELAFGQLTDTLNPEGDITGND QDDGRATVTLSRWNAGIRRDDEEILMSRTQGGIVSWKRNGREMVIRRPEIVTFRPLTDN DRGNRSGYDRAAWFAAGRYAVVTDTSITQSDDGGLTAAYRYELADPDHTPVSVTYRVTP GMRMQLTVEYPGNATGAASLPAFGIEWELPGEYQHLRYYGTGPEETYRDRKQGGKLGIW DTTSEASTAPYLMVQETGSHEDVRWLEATDIQGHGLRIIQRGDRHFTASLLPWNTYTIE AARRHEDLPAPRHNYLRLLAAQMGVGGDDSWGAPVHTAYQLPADRPLTLDVNLELI" gene complement(5187..6197) /locus_tag="Bbr_1553" CDS complement(5187..6197) /locus_tag="Bbr_1553" /codon_start=1 /transl_table=11 /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0036955" /protein_id="ABE96224.1" /translation="MATLKEVAERAGVSQSTVSRLLNDSSFSIKEETRRRVLRVCEELG YRNVFRPAIAVLDAPPSGEELQDVYFADLRKVLAECAESMELDPPASIRSIHELTERAS EFDGFITVGATVFPEADLRALHAVLPHGVCIDTNPAPHLFDSVRPDLSQTMLDALDAMI ATGRKRVAFLGGVGSIMGTHDYPEDIRELSFRQWATHLRLETDGLVYSSGTFTVENGYR LAEQLVSDHRGTGTMPDGLIVAADVLAVGALQALNALRVAVPDELAVVSVNNQSIARYT SPSLSSYAIDQRELARMAFSTLIDGLKHERRVRRHILLTTELVPRASFVPSAMMN" ORIGIN 1 ttactgcttg tcggtttcct cggaggcgaa tcgttcttcg agctgttcga cgatgtggtc 61 gtgcatgttc tcgtcgatct taacggccag gaggaagacg acgaggctgg cgacgatacc 121 ggcgagcggc aggtagtagg cgcaggtctt gaacgtgcga atgttcgcgg cggtcatgtc 181 ggcggcggtg gcgttgccga ccattccggc ggcgacgacc acgaagccca cgatgccgtt 241 ggacagggcg ccagcgatct tgtcgagcat cgggcgcacg gagagggtga cggcctcgtt 301 gcgcttgccg gtcttgagct ggccgtattc gatggagtcg gtcatgctca ggatggcggt 361 catctggatg gtctgcgcgg gaaggtagaa gaggacgagc gcgacgatga cgacgggcag 421 gttcatgggc gcgatgatga acagcgtgta gccggcgatc atgagcgcca tgccggcggt 481 gtacagccag cggcgcggaa tgcggcggtt gagcaccggg tagaggggcg tggtgaccag 541 tccggtgatg accgggatga cgccggcgat ggagaagctg tccggggcgc cgagcacgta 601 tttgaactgg tagaagagca cgccggtggt ggcgacgttg gccacggagt acagcaagta 661 gctgagggcg acccacagga gctggtcgtt ctgggcgatg gccttgaacg cctcgatggg 721 gttgccgttg gcctcggcct tggcgcgcag ctcgccctgg ttctctcggg tgccgaacgc 781 gacgctccac gcggtgagca agccgagcac ggcaatgatg atggcgaacg ccgcccagcc 841 ggtgcggccc tgctcccact ggccggtgaa cttccaggtg aaccagctga cgacgggcac 901 gacgatgacg gtgacgccgt tgtagccgat ggatccggtg aacgcgccga gcgcggtgta 961 cgtgctgcgc tcgtgcgagt cggaggaaat cgcggggatc atgccccagt acgagatgtc 1021 gcgcagcgag tagatcacgt cgagcaggat gaacacgatg acgaacagga ccatgaacac 1081 gccggtgttc acgtccacga ggccgaacag gccggtgaac accatgatca gcaggatgcc 1141 gggcacgatg ccgccgatga actgccaggg acggaaccgg ccccatcggg tgttcgtgtt 1201 gtccacgagg ttgccgagca gcgggtcgag gaagatctcc gcgatgcgga tgaccactat 1261 gagtccggtg atcaccgcga tgaggcgctt ggccagcgtc ttgtccacat cgatgaacag 1321 cgcggtggtc acgaatgtga tgaagaacgt gctcatcgtg ttgtagaacg cggcctggcc 1381 caggttgccg aatgcgtatg cgatcttctg ccccatgttt cctgaaggcg tggcatgcgg 1441 ctgttccgac gtcgccatgc gctgtgtggt ggatccgctc atggtgtggt ggcctccttg 1501 cgacctataa agaatccgtg cgcgggaacc gctccaatcc cgcaaagcgt cagtatagaa 1561 ctctcttgaa aaagtaaaaa aatttaccgc gtgtcgcaaa tcatgccaac gttttgcaac 1621 cagcactccg tgtggatgag taaggtttga agcttgcttg atgtgcttgg gtcttaagaa 1681 atccacgtat tttgcatgtt gtaggcctta tgccgcgaga tgctggaaag aatttgcgca 1741 atcaagtaaa aatatttatc cttattatat ataaggaacc cgattcaacg aggttccctc 1801 actgcggcgg caacgacgcg acgcaatccg atgcgaaagc gaggacatca tgaacacaac 1861 cgacgatcag ctgaagaacg gcgatccgat cgtctcaccg tccatgccga caacggcatg 1921 gctcacggac ccgcgcgtgt acgcggtcca ccggctcgac gcccattccg atcatgcgtg 1981 ctggtcgcac gcccccgtca acggcgaggg ttctgatctc gggcagagcc ttgacggcga 2041 atggcgggtc cgcgtcgaga cggcgccgac gggccgtttc cccgatggga cgagcgacgt 2101 gtcgcctctg ttcgccgcgt ccgacttcga cgattcgtcg ttctcccgcg tgcaggtgcc 2161 ctcgcatctg gagactgcgg ggctgcttgc cccgcagtac gtgaacgtgc agtacccatg 2221 ggacggacat gaggacccgg aggctccggc catccccgag cacggccatg tggcggtcta 2281 ccggcgcgag tttgacgcgg atggcgaagt cgcccaggcc gtgcgcgagg ggcgcccggt 2341 gacgcttacc ttccagggcg cagccacagc catctacgtg tggctcaacg gttcgttcgt 2401 tggctacgcc gaggactcct tcacgcccag cgagttcgac gtgacggacg cgatcaagat 2461 ggaaggcaac gtgctggcgg tcgcctgcta cgagtattcg agcgcgagct ggttggagga 2521 tcaggatttc tggcggctgc acggcctgtt ccgctccgtc gaactcaacg cgaggccttc 2581 cgcccatgtc gccgacatcc acgccgacac cgattgggac cccgccacat ctcgcggatc 2641 gctctcgctg gacatactag tcgacggcac accgaacgcc gcgacggccg acctcgtgct 2701 gcgcgataag aacggcacga ccgtctggca cacctccacc gaagcgacag gaacactgca 2761 cgccgaggcc gagatcgacg gcgcgtcgcc atggagcgcg gagcgacccg acctgtacac 2821 cctgtccgtc gccctgctcg acgcggacgg caggatcctg gaaatcgcgc gcacccgcat 2881 cggcttccgc cgcgtatcca tcgaggacgg catcctcaag ctcaacggca agcgcctcgt 2941 gttccgcggc gtcaaccgcc acgagttcga ctgccggcgc ggccgggcca tcaccgaaga 3001 ggacatgctg tgggacatcc gcttcatgaa gcgccacaac atcaacgcgg tacgcacctc 3061 gcactatccg aaccagtcac gctggtacga actgtgcgac gaatacggca tctacctgat 3121 cgacgagacc aacctggaaa cccacggcag ctggaacagc cccggcgaca tccccgtggg 3181 aacctccgtc cccggcgacg acgaagcctg gctcggcgca tgcatcgacc gactcgacag 3241 catgatcatg cgcgaccgca accatcccag cgtgctcatc tggtcgctgg gcaacgaatc 3301 ctatgcgggc gaagtcctca aggccatgag cgcgcacgcg caccggcttg atccgggtcg 3361 tcccgtccac tacgaaggcg tcaactggaa ccacgcctac gacgagatca gcgatttcga 3421 gagccgtatg tacgccaagc cggccgagat ccgagactgg ctcgaacacg gcgacgaacg 3481 aggcgaggcg agcaagccgt tcgtcagctg cgagtacatg catgccatgg gcaactcatg 3541 cggcggcctg agcgagttca tcgacctcga acggtacgag cgctactccg gcggattcat 3601 ctgggactac atcgaccaag ggctcgtcca gcgtctgccc gacggatgcg aacgcctcag 3661 cgtcggcgga gactggggcg accggccgac cgactacgaa ttcgtgggca acggcatcgt 3721 attcgccgac cgcaccccca gccccaaggc gcaggaggtc aagcagctgt attcgccggt 3781 caagctcacc cccgacggac acggcgtgac catcgagaac cgcaacctgt tcgccaacac 3841 cgacggctat gtattcgccg cacggctcct cgaagacgga cgcgagattt ggcatgccga 3901 ctaccgtttc gacgtggccg caggagatac ccaacaccat gacatcgcct tcccggacat 3961 cgactccgac gagggcacgc gcgaggtcac ctatgaggtc gatctcctgc tcgcagaggc 4021 caccgcgtgg gcacccgccg gctacgaact cgccttcgga caactcaccg acaccctcaa 4081 ccccgaaggg gacatcaccg ggaacgacca agacgacggc cgcgcgacgg tcactctcag 4141 ccgatggaac gccggcatcc gccgcgacga cgaggaaatc ctcatgtcac gcacccaggg 4201 aggcatcgtc tcctggaagc gcaacgggcg ggaaatggtc atccgccgtc ccgagatcgt 4261 caccttccgt ccgctgaccg acaacgaccg cggcaatcgc tccggatacg accgggccgc 4321 atggttcgcg gccggccgct acgccgtcgt gaccgatacg agcatcacgc aatccgacga 4381 tggcggactc acggccgcat accggtacga actcgccgac ccggatcaca cgccggtgtc 4441 tgtcacttac cgcgtcacgc ccggcatgcg catgcaactg accgtcgaat accccggcaa 4501 cgccacagga gcggccagcc tgcccgcatt cggcatcgaa tgggagctgc caggcgaata 4561 ccagcacctg cgctactacg gtaccggccc cgaggagacc tatcgcgacc gcaagcaggg 4621 cggcaagctc ggcatctggg acaccacctc agaggcgagc acggcaccgt atctcatggt 4681 gcaggaaacc ggcagccatg aggacgtccg ctggctcgaa gccaccgaca tccaaggcca 4741 cggattgcgt atcatccaac gcggcgaccg ccacttcacg gcgagcctgc tgccctggaa 4801 cacctacacg atcgaagccg cgcggcgcca cgaggacctg cccgcgccgc gccacaacta 4861 tctgcgcctg ctcgcggccc agatgggagt cggcggagac gactcctggg gagcccccgt 4921 ccacacggcc taccagctgc ccgccgacag gccgctcacc ctcgacgtga acctcgaact 4981 catctgaccg gcaacgggcg gcggcatgca ccaccatgcc gccgcccgta cccgtatata 5041 ttcatattcc ccaagcacaa caacgacatc aaccaggtgc cgacccactg catcacgcag 5101 ggcatcggca cggtgctcaa ggcccgccac ctcgtgctgc tcgcgttcgg cgcgggcaag 5161 gccgaggcca gtgccgtccg tcttcgtcaa ttcatcatgg ccgaggggac gaaactggct 5221 cgcggcacca gctcggtcgt cagcagaatg tgccgtcgca cccgacgctc atgcttcaac 5281 ccatcgatca gggtggagaa tgccatgcgc gccaactccc tttgatcgat tgcatatgag 5341 ctcagcgacg gtgacgtgta ccgagcgatc gactggttgt tcacgcttac cacggccaac 5401 tcgtcaggaa ccgccacgcg tagcgcgttc agtgcttgca atgcccccac cgcgagcacg 5461 tcagccgcca cgatcagacc gtcgggcatg gtgcctgtcc cgcgatggtc agaaaccaat 5521 tgctccgcga gacgatagcc gttctccacg gtgaacgtgc cggacgaata caccagcccg 5581 tccgtttcca atctcaagtg agtagcccac tgacggaacg acagctcgcg gatatcctcc 5641 ggataatcat gcgtacccat gatgctgcct acgccgccaa gaaacgcgac acgcttgcgg 5701 cccgtcgcga tcattgcatc cagagcgtcc agcatcgtct gcgacagatc gggtcgcacc 5761 gaatcgaaca gatgaggcgc cggattcgtg tcgatacaca cgccatgagg cagcaccgcg 5821 tgcaacgcac gtaaatccgc ctcggggaac accgtggcac ccacggtgat gaacccgtcg 5881 aactccgatg cgcgctccgt cagctcatgt atggaacgga tggatgcggg agggtccaat 5941 tccatcgatt ccgcgcactc cgcaaggact ttccgcagat cggcgaagta tacatcctgt 6001 agctcctccc cagacggagg cgcatccagc actgcgatcg cagggcggaa cacgttgcga 6061 taccccagct cttcgcatac acgcagcaca cgccgccgcg tctcctcctt gatggagaac 6121 gatgagtcgt tcagcagacg cgacaccgtg ctctgcgaca ccccggcccg ttccgcgact 6181 tccttgagcg tggccat //