LOCUS CP001515 6129 bp DNA linear BCT 30-JAN-2014 DEFINITION Bifidobacterium animalis subsp. lactis Bl-04, complete genome. ACCESSION CP001515 VERSION CP001515.1 DBLINK BioProject: PRJNA32897 BioSample: SAMN02603172 KEYWORDS . SOURCE Bifidobacterium animalis subsp. lactis Bl-04 ORGANISM Bifidobacterium animalis subsp. lactis Bl-04 Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 6129) AUTHORS Barrangou,R., Briczinski,E.P., Traeger,L.L., Loquasto,J.R., Richards,M., Horvath,P., Coute-Monvoisin,A.C., Leyer,G., Rendulic,S., Steele,J.L., Broadbent,J.R., Oberg,T., Dudley,E.G., Schuster,S., Romero,D.A. and Roberts,R.F. TITLE Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04 JOURNAL J. Bacteriol. 191 (13), 4144-4151 (2009) PUBMED 19376856 REFERENCE 2 (bases 1 to 6129) AUTHORS Barrangou,R., Briczinski,E.P., Traeger,L.L., Loquasto,J.R., Richards,M., Horvath,P., Coute-Monvoisin,A.-C., Leyer,G., Rendulic,S., Steele,J.L., Broadbent,J.R., Oberg,T., Dudley,E.G., Schuster,S., Romero,D.A. and Roberts,R.F. TITLE Direct Submission JOURNAL Submitted (17-MAR-2009) Danisco USA Inc, 3329 Agriculture Drive, Madison, WI 53716, USA COMMENT Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. FEATURES Location/Qualifiers source 1..6129 /organism="Bifidobacterium animalis subsp. lactis Bl-04" /mol_type="genomic DNA" /strain="Bl-04; ATCC SD5219" /sub_species="lactis" /culture_collection="ATCC:SD5219" /db_xref="taxon:580050" gene complement(1..1518) /gene="lacS" /locus_tag="Balac_0475" CDS complement(1..1518) /gene="lacS" /locus_tag="Balac_0475" /note="COG2211 Na+/melibiose symporter and related transporters" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X761|2.A.2.2.3" /protein_id="ACS45854.1" /translation="MTTNKFQAGAGQTASSAASSDMLRSTTPKTARHGLIRQRAAFAFG NLGQAAFYNAMSTFFMTYVTTALFARTDKAVAARMIALITGLVVAIRIAEIFLDPILGN IVDNTRTKWGRFRVWQFIGGIVPSVLLVVVFTGLFGLVNVNTTWFITLFIVTFILLDVF YSARDISYWGMIPALSSDSHERSVYTSLGTLTGSLGYNGITVVVIPIVSYFTFKFTGEQ GEGQPGWTAFAIIVALLGLITAWTVAFGTRESSSELRKQDSHCGPLDAFKAIAHNDQLL WTALSYLLYAIANVATTGVLFYQFTYVLGMPQRFAIAGVIPVITGLVTTPLYPLLNRVI PRRWLFAGGMGLMILGYALFIAAPRNLSVVLVALILFYLPAQTIQMTAILTMTDSIEYG QLKTGQRNEAVTLSVRPMLDKIAGAFSNGIVGFVAVAAGMVGSASAADMTSANIHTFTT WAYIVPSAGIVLSLIVFLLTVRIDEKRHAQIVRELETQLADSANTER" gene 1828..5031 /gene="lacZ" /locus_tag="Balac_0476" CDS 1828..5031 /gene="lacZ" /locus_tag="Balac_0476" /note="COG3250 Beta-galactosidase/beta-glucuronidase" /codon_start=1 /transl_table=11 /product="GH2" /protein_id="ACS45855.1" /translation="MNEETLQEVAEEKATEPPRNDVPSTDGALRSEEPTAAWLTDPRVF AVNRLPGHTDHNCADDQSGALKQHLDGEWAVKVVPSHLDRLPTEGLDEHWQHAHLPPEF ASRSFADGDFTRVQVPGCLEMQGLMRPQYVNIQYPWDGHENPQAPSVPTDNLVALYRRA FTADDRVGEALSRGERVSLTFHGAATAIYVWLNGVFVGYAEDSYTPSEFDVTEALHAGE NLLAVACFQYSSASWLEDQDCWRFHGLFRDVELEVRPHAHVRDMLAHADWNVDAQCGEL AVELDLDGAWCAANVELRLSTWEEHADGAALLWSATVESAPKIRYATTCEQVLPWSAEQ PNLYVLEAVVRDANGRVLETARTRIGFRHVEIRDGVLVLNGERIVFHGVNRHEFDARRG RSVTEEDMLWDVRFMKRHNINAVRTSHYPNQTRWMELCDEYGLYVIDEANLETHGSWNL PGDTADGVSIPGDDVRWQPACVDRVESMVRRDRNHACVVAWSLGNESYAGDVIRAMGNR CRELDPTRPVHYEGVTWNREYDDISDFESRMYAKPDEIREYLESDPAKPYISCEFMHAM GNSVGGLGEYVALERYPQYQGGFIWDFMDQALWQRLDDGTERLAYGGDFGDRPSDYEFS GDGIVFADRTVSAKAQEVKAQYAGVRLEPDGRGVRVTNTNAFQGTSGTVFVARMLLDGR EAWSKSYEFEVAAGSARSFDIGFPDVHSLPDGGVMHEVVYEVSQQLAHDTAWAEAGYEI AWGQAVVRPHASGRSGSKMNDAFDDDNLQIVTLGRWNAGVRVGQREILLSRTHGGVISL RDGEREYVIRVPKLLTFRPLTDNDRGMSSGFDRVQWFGAGRYARVVTGVGQVYRDELTG DLCGEYWYELADGAQTQVPIRYRIDSQLRMHIELEYTGCAGAPSLPAFGLEWMLPKQYE NLEFYGRGPAETYRDRKRAKLGIWNTTAQADMAPYLVPQETGNHEDVRWAYVFDADCHG LLVEADDSLALSLLPHSSLEIENATHQNELAQPRHMFLRLLAGQMGVGGDDSWGAPVHD RYLLPADEPLKLAVTISML" gene complement(5134..6129) /locus_tag="Balac_0477" CDS complement(5134..6129) /locus_tag="Balac_0477" /note="COG1609 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0044558" /protein_id="ACS45856.1" /translation="MVTRKDIAEQAGVSQSTVSRLLNGDPTLKVKADTRRRIMRTAAEL GYRAFTSRSIAVLNVPPQFDELQDAYFQSLQTELRKVAAEQGTTLTFFDSIDSLIAHAD DHDGFVATGPTSFQRTDLAHLRDALRYGVFIDTNPAPDWFDSVRPDLSQTMLDALDTLL VDGYTCIGYIGGVGSIMGLHNHTEDIRSLAFSDWSKRLGLPNEQYIYADGPFTVSNGRA LAARLLTDHPDDLPNALVIGSDPMAVGVLQAFAEAGVRVPTDIAVVSVDNLPIAQYTAP PLSSYAIDLHELVYAALTTLTDAIARDRHVRRHVLLSTELVRRESLPSKS" ORIGIN 1 tcaccgttcc gtgttcgcag agtcagcaag ctgcgtctcg agctcgcgaa caatctgcgc 61 atggcgcttc tcgtcgatgc gcaccgtgag caggaacacg atcaggctga gcacaatgcc 121 ggcggacggc acaatgtacg cccaagtggt gaacgtatgg atgttcgcac tcgtcatatc 181 cgcggcggaa gccgatccca ccatgccagc agccactgcg acgaagccga cgatgccgtt 241 cgagaaggcg cctgcgatct tgtcgagcat cggtcgcacg ctcagcgtca ccgcctcgtt 301 gcgctgcccg gttttgagct gtccgtattc gatcgaatcg gtcatcgtga gaatcgcggt 361 catctgaatc gtttgcgcag gcagatagaa cagaatgagc gcgacgagca cgaccgatag 421 attgcgcggg gccgcaatga acaatgcata cccgagaatc atgagcccca tgcctccggc 481 gaacaaccat cgacgtggga tcacacggtt gagcaacgga tacagcggcg tggtgaccag 541 gccggtgatc acgggaatca cgcccgcgat ggcgaaacgc tgcggcatgc cgagcacata 601 ggtgaactgg tagaacagca cgccggtggt cgccacgttc gcaatggcat acagcaggta 661 gctcaatgcg gtccacagca gttggtcgtt gtgggcgatg gccttgaacg cgtcaagtgg 721 gccgcaatgg gagtcctgtt tgcgtagctc gctcgagctc tcacgtgtac cgaatgcgac 781 ggtccacgcg gtgatgagcc ccagcagtgc gacgatgatg gcaaatgcag tccaccccgg 841 ttggccttcg ccctgctcgc cggtgaattt gaaggtgaag tagctgacga tgggaatgac 901 gacgacggtg atgccgttat agccaagcga accggtgagc gtgccgagtg aagtgtagac 961 gctgcgttca tgcgaatcgc tggagagtgc cggaatcatg ccccaatagg agatgtcgcg 1021 cgccgagtag aacacgtcga gcagaatgaa cgtgacaatg aacagcgtga tgaaccaggt 1081 ggtgttcacg ttgacgagtc caaacaggcc ggtgaacacc accacgagca gcacggaggg 1141 cacaatgcct ccgatgaact gccagacgcg gaaacggccc cacttggtgc gcgtgttgtc 1201 gacgatattg cccaagatcg ggtcgaggaa gatctccgcg atgcggatgg caacgaccag 1261 tccggtgatc agggctatca tgcgcgcggc cacggccttg tcggtgcgcg cgaacaacgc 1321 cgtggtcacg taggtcatga agaacgtgct catggcgttg tagaacgccg cctgaccaag 1381 attgccgaag gcgaaggccg cgcgctggcg gattaaaccg tgtcgtgcgg tcttcggggt 1441 ggtcgaacgg agcatgtcgg aggatgcggc agacgacgct gtctgcccgg cacccgcttg 1501 gaatttgttg gtggtcatgt gacctaacct ccttcattgg cgattacagt tcatatacta 1561 tacatgattt actaaatttg tttaccgtgt gttggtgtcg atctgtctaa ttatcgattg 1621 ctgcagtatt tgaaaatcgg ctcaggatat atgtttcatg gatatatgct ctttctgtgt 1681 gaatgtctgt ctatgaagag attgcgcaat gtgctgaatt cttgttgcgt gatattggta 1741 aatagtttac tattgcgtag tacaccgaag tacagagccg acggtaccag cgttggtgcc 1801 gcggtcaaat gcgagtcagg agcaacgatg aacgaggaga ccttgcagga agtcgcagag 1861 gagaaggcga ccgagccccc gcgcaatgat gtgccgtcca ctgatggagc tctgcgatcc 1921 gaagagccga cggcggcgtg gctgaccgat ccccgtgtgt tcgcggtcaa ccggctgccg 1981 gggcataccg accacaattg cgccgacgat cagtccggcg cgttgaagca gcacctcgac 2041 ggcgaatggg cggtgaaggt ggtgccctcg cacttggatc ggctccccac ggagggcttg 2101 gatgagcatt ggcagcacgc ccaccttccg ccggaattcg catcgcgcag cttcgccgat 2161 ggcgacttca cccgtgtgca ggtgccgggg tgtctggaga tgcaggggct catgcgtccg 2221 caatatgtga acatccaata tccgtgggat ggccatgaaa atccgcaggc accctccgtt 2281 cccacagaca atctggtcgc actgtaccgg cgtgcgttca ctgccgatga tcgcgtgggc 2341 gaggcgctgt cccgcgggga gcgcgtgagt ctgaccttcc acggtgcggc gacggcgatc 2401 tacgtgtggc tcaacggcgt gttcgtgggg tacgcagagg attcctacac ccccagcgag 2461 ttcgatgtga ccgaggcgct gcatgcgggg gagaatctgc ttgccgtggc gtgcttccaa 2521 tattcgagtg cgagttggct ggaagaccag gattgctggc gtttccacgg attgttccgc 2581 gacgtggagc tggaggtgcg acctcacgcc catgttcgcg acatgcttgc gcatgcggat 2641 tggaatgtgg atgcgcagtg cggtgagctc gccgtcgaac tcgatctcga cggggcgtgg 2701 tgtgcggcca atgtggagct gcggctcagc acatgggaag agcacgcaga cggcgcggcc 2761 ctgctgtgga gcgcgacggt ggaatctgct ccgaagatcc gctacgccac gacatgcgaa 2821 caggtgctgc cgtggagcgc ggagcagccg aatctgtacg ttctcgaggc tgtggtgcgc 2881 gatgcgaacg gtcgtgtgct ggaaaccgcg cgcacgcgca tcggattccg ccatgtggag 2941 attcgcgatg gcgtgcttgt gctcaatggc gaacgcattg tgttccatgg cgtcaaccgg 3001 cacgaattcg acgcgcggcg cggacgcagc gtcaccgagg aggacatgct gtgggatgtg 3061 cggttcatga agcggcacaa catcaatgcc gtgcgcacct cgcattaccc gaatcagacg 3121 cggtggatgg agctgtgcga cgaatacgga ctctatgtga tcgacgaggc caatctggag 3181 acgcatggca gctggaatct gcccggtgac acggccgatg gcgtctcgat accgggggac 3241 gacgtgcgtt ggcagccggc ttgcgtggac cgtgtggaga gcatggtgcg ccgagaccga 3301 aaccatgcgt gcgtggtcgc gtggtcgctc ggcaacgaat cgtacgcggg cgatgtgatc 3361 cgcgcgatgg ggaatcgctg ccgagagctc gaccccaccc ggccggtgca ctacgagggc 3421 gtgacctgga accgtgaata cgacgacatc agcgatttcg aatcgcgtat gtatgcgaag 3481 cccgatgaga ttcgcgaata cctggaaagt gatccggcga aaccgtacat ctcctgcgaa 3541 ttcatgcatg cgatgggcaa ttcggtggga ggactgggtg aatacgtcgc cttggagcgc 3601 tacccgcaat accaaggcgg cttcatctgg gacttcatgg atcaggcact atggcagcgg 3661 ctcgacgacg gcacggaacg cctggcctat ggcggcgatt tcggcgacag gccgagtgat 3721 tacgagttca gcggcgatgg cattgtgttc gccgaccgga ccgtgtcggc gaaggcgcaa 3781 gaggtgaagg cacaatatgc cggcgtgcgt ctcgaaccgg atgggcgcgg tgtgcgcgtg 3841 accaatacga atgcgttcca aggcacctcg ggcaccgtgt ttgtggcgcg gatgcttctg 3901 gacggacgtg aggcatggtc gaagagctat gagttcgagg tggcggccgg aagcgcccga 3961 agcttcgaca tcggcttccc tgacgtgcac agtctgcccg acggtggcgt catgcatgag 4021 gtggtgtatg aggtgagtca gcagttggcg catgacaccg cctgggcgga agcggggtat 4081 gagatcgcat ggggacaggc cgtggtgcgt ccccatgcga gtggccgcag cgggtcgaag 4141 atgaatgatg cgttcgatga cgacaatctg cagatcgtca ctctcgggcg atggaacgcc 4201 ggagtgcgtg ttgggcagcg tgagatcctg ctgtcgcgca cgcatggcgg agtcatctcg 4261 ttgcgcgacg gtgagcgtga atatgtgatt cgtgtgccga aactgctcac gttccgcccg 4321 ctcaccgaca acgaccgtgg catgagctcc ggtttcgacc gcgtgcagtg gttcggtgcc 4381 gggcggtatg cgcgcgtcgt caccggcgtg ggccaggtgt accgcgacga gctcaccgga 4441 gatctgtgcg gcgagtactg gtatgagttg gcagacggcg cgcagacgca ggtgccgatt 4501 cgttatcgta tcgattcgca gttgcgcatg catatcgaac ttgagtatac ggggtgtgcg 4561 ggtgcgccga gcctgccggc tttcggattg gagtggatgc tgccgaaaca gtatgagaat 4621 ctggaattct atggtcgggg gcctgccgag acctaccgtg accgcaagcg cgccaagctc 4681 ggcatctgga acaccacggc gcaggcggac atggcgccgt atctggtgcc gcaggaaacc 4741 ggcaatcacg aggatgtgcg ttgggcctat gtgtttgacg ccgattgcca tgggctgctc 4801 gtggaggccg acgactcgct cgcgctcagc ctgctgccgc acagttcgtt ggagatcgaa 4861 aatgccacac accagaacga gttggcgcaa ccacgtcata tgttcctgcg cctgctcgca 4921 gggcagatgg gcgtgggcgg cgacgactcg tggggcgctc ctgttcacga tcggtatctg 4981 ctgccggcag acgaaccgct caagctggcc gtgacaatca gcatgctctg actcatgcat 5041 tccgaacatg acgaacccgt gtctgtgtgc acgggttcgt catgcggagg agtctgtgaa 5101 tatgaccaac cagtgcgcac gcgcacgtat gagtcatgat ttgcttggca gactttcgcg 5161 gcgaacaagc tcggtgctca gcagaacatg ccggcgcacg tgcctgtcgc gcgcgatggc 5221 gtcggtgagt gtggtgagcg ccgcatagac gagttcatgc aggtcgatgg cgtaggaact 5281 cagcggcggt gcggtgtact gcgcgatcgg cagattgtcg acgctcacga cggcgatgtc 5341 cgtgggcacg cgcacgccgg cctctgcgaa ggcttgcagc acgccgacgg ccatagggtc 5401 ggagccgatc acgagcgcgt tgggaagatc gtcggggtgg tcggtgagga gacgagcggc 5461 gagtgcgcgt ccgttgctca cggtgaacgg gccgtcggcg tagatatact gctcgttcgg 5521 caggcccagg cgcttgctcc agtcgctgaa tgcgagcgag cgaatgtctt cggtgtggtt 5581 gtgcaggccc atgatcgagc cgacgccacc gatgtagccg atgcacgtgt aaccgtcgac 5641 gagaagtgta tcgagggcat cgagcatcgt ttggctcagg tcggggcgta ccgaatcgaa 5701 ccagtccggc gccggattcg tgtcaatgaa cacgccgtag cggagtgcgt cgcgcaggtg 5761 ggccagatcg gtgcgctgga aagaggtggg tccggtggcg acgaagccgt cgtggtcgtc 5821 ggcgtgtgcg atgagactgt ctatcgagtc gaagaaagtg agcgtcgtgc cctgctcggc 5881 tgcgaccttg cgcaactcgg tttgcagcga ctggaaatag gcgtcctgca attcgtcgaa 5941 ttgtggcggc acgttgagca cggctatcga acggctcgtg aacgcccggt agccaagttc 6001 cgcagccgtg cgcatgattc tgcggcgtgt gtccgccttc accttgaggg tggggtcacc 6061 gttgagcaga cgggagacag tgctttgcga gacgccggcc tgctcggcga tgtctttgcg 6121 agtgaccat //