##gff-version 3
##sequence-region NC_007614 1 20626
# conversion-by bp_genbank2gff3.pl
# organism Nitrosospira multiformis ATCC 25196
# Note Nitrosospira multiformis ATCC 25196, complete genome.
# date 26-AUG-2019
NC_007614	GenBank	region	1	20626	.	+	1	ID=NC_007614;Dbxref=BioProject:PRJNA224116,taxon:323848;Name=NC_007614;Note=Nitrosospira multiformis ATCC 25196%2C complete genome.,REFSEQ INFORMATION: The reference sequence was derived from CP000103. URL -- http://www.jgi.doe.gov Source DNA available from Dan Arp (arpd@bcc.orst.edu) Bacteria available from ATCC: ATCC 25196 Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 08/26/2019 01:43:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 2,877 CDSs (total) :: 2,827 Genes (coding) :: 2,732 CDSs (with protein) :: 2,732 Genes (RNA) :: 50 rRNAs :: 1,1,1 (5S,16S,23S) complete rRNAs :: 1,1,1 (5S,16S,23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 95 CDSs (without protein) :: 95 Pseudo Genes (ambiguous residues) :: 0 of 95 Pseudo Genes (frameshifted) :: 46 of 95 Pseudo Genes (incomplete) :: 57 of 95 Pseudo Genes (internal stop) :: 11 of 95 Pseudo Genes (multiple problems) :: 17 of 95 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000103. URL -- http://www.jgi.doe.gov Source DNA available from Dan Arp (arpd@bcc.orst.edu) Bacteria available from ATCC: ATCC 25196 Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 08/26/2019 01:43:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 2%2C877 CDSs (total) :: 2%2C827 Genes (coding) :: 2%2C732 CDSs (with protein) :: 2%2C732 Genes (RNA) :: 50 rRNAs :: 1%2C 1%2C 1 (5S%2C 16S%2C 23S) complete rRNAs :: 1%2C 1%2C 1 (5S%2C 16S%2C 23S) tRNAs :: 43 ncRNAs :: 4 Pseudo Genes (total) :: 95 CDSs (without protein) :: 95 Pseudo Genes (ambiguous residues) :: 0 of 95 Pseudo Genes (frameshifted) :: 46 of 95 Pseudo Genes (incomplete) :: 57 of 95 Pseudo Genes (internal stop) :: 11 of 95 Pseudo Genes (multiple problems) :: 17 of 95 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;culture_collection=ATCC:25196;date=26-AUG-2019;mol_type=genomic DNA;organism=Nitrosospira multiformis ATCC 25196;strain=ATCC 25196;type_material=type strain of Nitrosospira multiformis
NC_007614	GenBank	gene	1	1842	.	-	1	ID=NMUL_RS13110;Dbxref=GeneID:41371233;Name=NMUL_RS13110;old_locus_tag=Nmul_A2515
NC_007614	GenBank	mRNA	1	1842	.	-	1	ID=NMUL_RS13110.t01;Parent=NMUL_RS13110
NC_007614	GenBank	CDS	1	1842	.	-	1	ID=NMUL_RS13110.p01;Parent=NMUL_RS13110.t01;Dbxref=GeneID:41371233;Name=NMUL_RS13110;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180789.1;old_locus_tag=Nmul_A2515;product=HAD-IIIC family phosphatase;protein_id=WP_011381803.1;transl_table=11;translation=length.613
NC_007614	GenBank	exon	1	1842	.	-	1	Parent=NMUL_RS13110.t01
NC_007614	GenBank	gene	1890	2585	.	-	1	ID=NMUL_RS13115;Dbxref=GeneID:41371234;Name=NMUL_RS13115;old_locus_tag=Nmul_A2516
NC_007614	GenBank	mRNA	1890	2585	.	-	1	ID=NMUL_RS13115.t01;Parent=NMUL_RS13115
NC_007614	GenBank	CDS	1890	2585	.	-	1	ID=NMUL_RS13115.p01;Parent=NMUL_RS13115.t01;Dbxref=GeneID:41371234;Name=NMUL_RS13115;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180791.1;old_locus_tag=Nmul_A2516;product=methyltransferase;protein_id=WP_104009647.1;transl_table=11;translation=length.231
NC_007614	GenBank	exon	1890	2585	.	-	1	Parent=NMUL_RS13115.t01
NC_007614	GenBank	gene	2774	3715	.	-	1	ID=NMUL_RS13120;Dbxref=GeneID:41371235;Name=NMUL_RS13120;old_locus_tag=Nmul_A2517
NC_007614	GenBank	mRNA	2774	3715	.	-	1	ID=NMUL_RS13120.t01;Parent=NMUL_RS13120
NC_007614	GenBank	CDS	2774	3715	.	-	1	ID=NMUL_RS13120.p01;Parent=NMUL_RS13120.t01;Dbxref=GeneID:41371235;Name=NMUL_RS13120;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180793.1;old_locus_tag=Nmul_A2517;product=GNAT family N-acetyltransferase;protein_id=WP_011381805.1;transl_table=11;translation=length.313
NC_007614	GenBank	exon	2774	3715	.	-	1	Parent=NMUL_RS13120.t01
NC_007614	GenBank	gene	3712	4674	.	-	1	ID=NMUL_RS13125;Dbxref=GeneID:41371236;Name=NMUL_RS13125;old_locus_tag=Nmul_A2518
NC_007614	GenBank	mRNA	3712	4674	.	-	1	ID=NMUL_RS13125.t01;Parent=NMUL_RS13125
NC_007614	GenBank	CDS	3712	4674	.	-	1	ID=NMUL_RS13125.p01;Parent=NMUL_RS13125.t01;Dbxref=GeneID:41371236;Name=NMUL_RS13125;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180795.1;old_locus_tag=Nmul_A2518;product=hypothetical protein;protein_id=WP_011381806.1;transl_table=11;translation=length.320
NC_007614	GenBank	exon	3712	4674	.	-	1	Parent=NMUL_RS13125.t01
NC_007614	GenBank	gene	4815	6758	.	-	1	ID=NMUL_RS13130;Dbxref=GeneID:41371237;Name=NMUL_RS13130;old_locus_tag=Nmul_A2519
NC_007614	GenBank	mRNA	4815	6758	.	-	1	ID=NMUL_RS13130.t01;Parent=NMUL_RS13130
NC_007614	GenBank	CDS	4815	6758	.	-	1	ID=NMUL_RS13130.p01;Parent=NMUL_RS13130.t01;Dbxref=GeneID:41371237;Name=NMUL_RS13130;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009207279.1;old_locus_tag=Nmul_A2519;product=amidotransferase 1%2C exosortase A system-associated;protein_id=WP_011381807.1;transl_table=11;translation=length.647
NC_007614	GenBank	exon	4815	6758	.	-	1	Parent=NMUL_RS13130.t01
NC_007614	GenBank	gene	6779	7984	.	-	1	ID=NMUL_RS13135;Dbxref=GeneID:41371238;Name=NMUL_RS13135;old_locus_tag=Nmul_A2520
NC_007614	GenBank	mRNA	6779	7984	.	-	1	ID=NMUL_RS13135.t01;Parent=NMUL_RS13135
NC_007614	GenBank	CDS	6779	7984	.	-	1	ID=NMUL_RS13135.p01;Parent=NMUL_RS13135.t01;Dbxref=GeneID:41371238;Name=NMUL_RS13135;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011633984.1;old_locus_tag=Nmul_A2520;product=TIGR03088 family PEP-CTERM/XrtA system glycosyltransferase;protein_id=WP_011381808.1;transl_table=11;translation=length.401
NC_007614	GenBank	exon	6779	7984	.	-	1	Parent=NMUL_RS13135.t01
NC_007614	GenBank	gene	7968	9557	.	-	1	ID=NMUL_RS13140;Dbxref=GeneID:41371239;Name=xrtA;locus_tag=NMUL_RS13140;old_locus_tag=Nmul_A2521
NC_007614	GenBank	mRNA	7968	9557	.	-	1	ID=NMUL_RS13140.t01;Parent=NMUL_RS13140
NC_007614	GenBank	CDS	7968	9557	.	-	1	ID=NMUL_RS13140.p01;Parent=NMUL_RS13140.t01;Dbxref=GeneID:41371239;eC_number=3.4.22.-;Name=xrtA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180800.1;locus_tag=NMUL_RS13140;old_locus_tag=Nmul_A2521;product=exosortase A;protein_id=WP_011381809.1;transl_table=11;translation=length.529
NC_007614	GenBank	exon	7968	9557	.	-	1	Parent=NMUL_RS13140.t01
NC_007614	GenBank	gene	9612	10817	.	-	1	ID=NMUL_RS13145;Dbxref=GeneID:41371240;Name=NMUL_RS13145;old_locus_tag=Nmul_A2522
NC_007614	GenBank	mRNA	9612	10817	.	-	1	ID=NMUL_RS13145.t01;Parent=NMUL_RS13145
NC_007614	GenBank	CDS	9612	10817	.	-	1	ID=NMUL_RS13145.p01;Parent=NMUL_RS13145.t01;Dbxref=GeneID:41371240;Name=NMUL_RS13145;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180801.1;old_locus_tag=Nmul_A2522;product=TIGR03087 family PEP-CTERM/XrtA system glycosyltransferase;protein_id=WP_011381810.1;transl_table=11;translation=length.401
NC_007614	GenBank	exon	9612	10817	.	-	1	Parent=NMUL_RS13145.t01
NC_007614	GenBank	gene	10822	11907	.	-	1	ID=NMUL_RS13150;Dbxref=GeneID:41371241;Name=NMUL_RS13150;old_locus_tag=Nmul_A2523
NC_007614	GenBank	mRNA	10822	11907	.	-	1	ID=NMUL_RS13150.t01;Parent=NMUL_RS13150
NC_007614	GenBank	CDS	10822	11907	.	-	1	ID=NMUL_RS13150.p01;Parent=NMUL_RS13150.t01;Dbxref=GeneID:41371241;Name=NMUL_RS13150;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009207283.1;old_locus_tag=Nmul_A2523;product=FemAB family PEP-CTERM system-associated protein;protein_id=WP_011381811.1;transl_table=11;translation=length.361
NC_007614	GenBank	exon	10822	11907	.	-	1	Parent=NMUL_RS13150.t01
NC_007614	GenBank	gene	11904	12722	.	-	1	ID=NMUL_RS13155;Dbxref=GeneID:41371242;Name=NMUL_RS13155;old_locus_tag=Nmul_A2524
NC_007614	GenBank	mRNA	11904	12722	.	-	1	ID=NMUL_RS13155.t01;Parent=NMUL_RS13155
NC_007614	GenBank	CDS	11904	12722	.	-	1	ID=NMUL_RS13155.p01;Parent=NMUL_RS13155.t01;Dbxref=GeneID:41371242;Name=NMUL_RS13155;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180803.1;old_locus_tag=Nmul_A2524;product=DUF3473 domain-containing protein;protein_id=WP_104009646.1;transl_table=11;translation=length.272
NC_007614	GenBank	exon	11904	12722	.	-	1	Parent=NMUL_RS13155.t01
NC_007614	GenBank	gene	12875	13879	.	-	1	ID=NMUL_RS13160;Dbxref=GeneID:41371243;Name=NMUL_RS13160;old_locus_tag=Nmul_A2525
NC_007614	GenBank	mRNA	12875	13879	.	-	1	ID=NMUL_RS13160.t01;Parent=NMUL_RS13160
NC_007614	GenBank	CDS	12875	13879	.	-	1	ID=NMUL_RS13160.p01;Parent=NMUL_RS13160.t01;Dbxref=GeneID:41371243;Name=NMUL_RS13160;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180804.1;old_locus_tag=Nmul_A2525;product=AAA family ATPase;protein_id=WP_011381813.1;transl_table=11;translation=length.334
NC_007614	GenBank	exon	12875	13879	.	-	1	Parent=NMUL_RS13160.t01
NC_007614	GenBank	gene	13893	15479	.	-	1	ID=NMUL_RS13165;Dbxref=GeneID:41371244;Name=NMUL_RS13165;old_locus_tag=Nmul_A2526
NC_007614	GenBank	mRNA	13893	15479	.	-	1	ID=NMUL_RS13165.t01;Parent=NMUL_RS13165
NC_007614	GenBank	CDS	13893	15479	.	-	1	ID=NMUL_RS13165.p01;Parent=NMUL_RS13165.t01;Dbxref=GeneID:41371244;Name=NMUL_RS13165;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180805.1;old_locus_tag=Nmul_A2526;product=TIGR03016 family PEP-CTERM system-associated outer membrane protein;protein_id=WP_011381814.1;transl_table=11;translation=length.528
NC_007614	GenBank	exon	13893	15479	.	-	1	Parent=NMUL_RS13165.t01
NC_007614	GenBank	pseudogenic_exon	15466	16359	.	-	1	ID=NMUL_RS13170;Dbxref=GeneID:41371245;Name=NMUL_RS13170;Note=internal stop%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011633977.1;old_locus_tag=Nmul_A2527;product=tyrosine-protein kinase family protein;pseudo=_no_value;transl_table=11
NC_007614	GenBank	pseudogene	15466	16359	.	-	1	ID=NMUL_RS13170.pseudogene;Alias=NMUL_RS13170;Dbxref=GeneID:41371245;Name=NMUL_RS13170;old_locus_tag=Nmul_A2527;pseudo=_no_value
NC_007614	GenBank	gene	16664	18196	.	-	1	ID=NMUL_RS13175;Dbxref=GeneID:41371246;Name=NMUL_RS13175;old_locus_tag=Nmul_A2528
NC_007614	GenBank	mRNA	16664	18196	.	-	1	ID=NMUL_RS13175.t01;Parent=NMUL_RS13175
NC_007614	GenBank	CDS	16664	18196	.	-	1	ID=NMUL_RS13175.p01;Parent=NMUL_RS13175.t01;Dbxref=GeneID:41371246;Name=NMUL_RS13175;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180807.1;old_locus_tag=Nmul_A2528;product=chain-length determining protein;protein_id=WP_011381816.1;transl_table=11;translation=length.510
NC_007614	GenBank	exon	16664	18196	.	-	1	Parent=NMUL_RS13175.t01
NC_007614	GenBank	gene	18535	19161	.	-	1	ID=NMUL_RS13180;Dbxref=GeneID:41371247;Name=NMUL_RS13180;old_locus_tag=Nmul_A2529
NC_007614	GenBank	mRNA	18535	19161	.	-	1	ID=NMUL_RS13180.t01;Parent=NMUL_RS13180
NC_007614	GenBank	CDS	18535	19161	.	-	1	ID=NMUL_RS13180.p01;Parent=NMUL_RS13180.t01;Dbxref=GeneID:41371247;Name=NMUL_RS13180;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004180809.1;old_locus_tag=Nmul_A2529;product=sugar ABC transporter substrate-binding protein;protein_id=WP_011381817.1;transl_table=11;translation=length.208
NC_007614	GenBank	exon	18535	19161	.	-	1	Parent=NMUL_RS13180.t01
NC_007614	GenBank	gene	19511	20626	.	-	1	ID=NMUL_RS13185;Dbxref=GeneID:41371248;Name=queG;locus_tag=NMUL_RS13185;old_locus_tag=Nmul_A2530
NC_007614	GenBank	mRNA	19511	20626	.	-	1	ID=NMUL_RS13185.t01;Parent=NMUL_RS13185
NC_007614	GenBank	CDS	19511	20626	.	-	1	ID=NMUL_RS13185.p01;Parent=NMUL_RS13185.t01;Dbxref=GeneID:41371248;eC_number=1.17.99.6;Name=queG;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015830011.1;locus_tag=NMUL_RS13185;old_locus_tag=Nmul_A2530;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_049783181.1;transl_table=11;translation=length.371
NC_007614	GenBank	exon	19511	20626	.	-	1	Parent=NMUL_RS13185.t01