LOCUS CP000303 6862 bp DNA linear BCT 31-JAN-2014 DEFINITION Bifidobacterium breve UCC2003, complete genome. ACCESSION CP000303 VERSION CP000303.1 DBLINK BioProject: PRJNA13487 BioSample: SAMN02604112 KEYWORDS . SOURCE Bifidobacterium breve UCC2003 ORGANISM Bifidobacterium breve UCC2003 Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 6862) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S.C., Reunanen,J., Bottacini,F., Claesson,M.J., O'Brien,F., Flynn,K., Casey,P.G., Moreno Munoz,J.A., Kearney,B., Houston,A.M., O'Mahony,C., Higgins,D.G., Shanahan,F., Palva,A., de Vos,W.M., Fitzgerald,G.F., Ventura,M., O'Toole,P.W. and van Sinderen,D. TITLE Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor JOURNAL Proc. Natl. Acad. Sci. U.S.A. (2011) In press PUBMED 21690406 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 6862) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S., Reunanen,J., Bottacini,F., Claesson,M., O'Brien,F., O'Flynn,K., Casey,P., Moreno-Munoz,J., Higgins,D.G., Shanahan,F., de Vos,W., Fitzgerald,G.F., Ventura,M., O'Toole,P. and van Sinderen,D. TITLE Direct Submission JOURNAL Submitted (27-MAR-2006) Department of Microbiology, Alimentary Pharmabiotic Centre, University College Cork, College Road, Cork, Munster, Ireland COMMENT Source DNA or strain is available from Douwe van Sinderen, d.vansinderen@ucc.ie. FEATURES Location/Qualifiers source 1..6862 /organism="Bifidobacterium breve UCC2003" /mol_type="genomic DNA" /strain="UCC2003" /db_xref="taxon:326426" gene complement(1..1863) /locus_tag="Bbr_1856" CDS complement(1..1863) /locus_tag="Bbr_1856" /EC_number="2.4.1.82" /EC_number="3.2.1.22" /codon_start=1 /transl_table=11 /product="GH36" /protein_id="ABE96518.1" /translation="MIAETCPITVRTVTAHLDTGRAVYGEQASAICELPVEAVTIVPES CEDECTSSAGIQGDAQVRLWRIDVNAHAPQPKDRAAAFQEQQAFEPHHAIDVSLTMASV DSGNDDTMLALYQHKEWWMRPTWVRTPFELPERTQLLLCRNNDAEDAEWLVLVAICGTD IRADFSGQPATESDDTALRLVLSSNRVGRTTLCDTAAYIACASDPYMAIRAATQTAARQ LGIRTRKERPFPDALTGLGWCTWDSLGRDVNEQAIVNKMEEFQAKHVPISWVLIDDGWS NTDRTKETLIDFGADRQRFPHGLAHTIALLKTHYGVRSVGVWQAFQGYWNGLDESGVAA ASCPTAITTTANGCLIPGSRAEQPAQFWDAWDGELAEAGVDFVKVDSQSSTSVMVRGAE SYGEATWGRHQALDEVTSRRFGGALINCMGMAPEDYWHRPSSPITRSSDDYLPHNPDSL GEHLIQNAYCALLMGELYHCDWDMFWTEHPHARVHAVLRLLSGGPVYCSDACGHTDAAV LRDLLAEDGTLPRPDEPARPVIASLLNDPEHAGYALGVTARFGAEQVIAFVGLRRQPQI GIITASGRSCRIIDDHGATIDMNPGETHTCEIEYGQLRVFRVQS" gene complement(1895..3565) /locus_tag="Bbr_1857" CDS complement(1895..3565) /locus_tag="Bbr_1857" /EC_number="3.2.1.20" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q07837|8.A.9.1.2" /protein_id="ABE96519.1" /translation="MTFTNNDWWRDAVIYQIYPRSFSDANGDGNGDLQGVIDRLDYLQA LGVDALWLSPFYPSPLADGGYDVADYCDVDPRLGTLDQFDELVAKAHERGIGIIVDIVP NHTSDQHRWFQEALAQGPESETAQRYVFRQGKGEHGELPPTNWLSNFGGSAWESCGDGW YYLHLFAKEQPDLNWDNPEVRHEFLRVLTFWCDRGVDGFRIDVSHGLAKDLREPLRDRI DPTLMSPQATDGSDPLWDRDAVHDIYREWRDLFNQYMPAKYAVGESWSPFTTRIFQYAK PDELGAVFDFSMSKAAWNREEYRTTIERTHRYALAAETAPTWVLGNHDVPRIASRLGLP SGANIEQWVTSNGTNPPIDPALAARRARAAALVMLGLPGTAFVYQGEELGLPEDFDLTE DEIQDPNWERSGHYFKGRDGCRVPLPWQSDGPAFGFNATGALWLPQPAWFAQYAANRQI GDGASVLHLYRAAIALRKQWVDNGTDFQFSWLTNEECPAPLLGWRLPSGMVVMANFSDS QPVALPQPMTVLLVSDATVQANTQVESVPPAATVWALPA" gene complement(3666..4490) /locus_tag="Bbr_1858" CDS complement(3666..4490) /locus_tag="Bbr_1858" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q8RJU8|3.A.1.1.18" /protein_id="ABE96520.1" /translation="MQQSKAVRITGTAMLALTVLFCVLPFLSMLSAALQPQGSMPEGIQ FTAHPHWENFIDAWNMANITPLLLNSCILVIVVVPCVVIFCSLGGYAFAQLKVPCKGLI YVLFLVGLTIPFETLVTPLYYEISGMGLLNTRLALILPLIGLNIPFGIVWMRSCFEQMP RDLIEAASIDGAGHLRTFRSIQLPLALPAISSLGILTFLATWNQFLLAVVLENDPNKRT MAGALQSFVGQYQTDVVLLNAGALLIMAPTMILFIFLQRYFIRAMLAGSVKG" gene complement(4493..5533) /locus_tag="Bbr_1859" CDS complement(4493..5533) /locus_tag="Bbr_1859" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q7WWQ9|3.A.1.1.20" /protein_id="ABE96521.1" /translation="MHLPGGVFFPFSRSAWFLPIARTTLCAMFDSQFTPNQQSVVTIMD SHKAAKAVKPKRNMSLGLVSLLFLAPALVFYIAFELWPIIQTIWYSFYEWNGIDASTFI GVENYITVFTDPDLYGSILHSFYLIIFFSIIPIVLGLIIAVLIKDMKSKVGRSFAQVCL FLPRVIPGAAAGVAWTWMLADKGTANQLLRAVGLGDFAHVWLGDQSTSLNAVGVIGFWL QLGFCVVLLLSGIGGIDQSLYEAASLDGAGWWRQLFSITLPGLRGQIGVCLTMTIISAL ASFDVVYMSTQGGPGTSTMVPGVQVYRLAFTQQSVGLASALAVTLMILVLLVVGPLQRL VNGKEQ" gene complement(5537..6862) /locus_tag="Bbr_1860" CDS complement(5537..6862) /locus_tag="Bbr_1860" /codon_start=1 /transl_table=11 /product="STP|SBP_bac_1" /protein_id="ABE96522.1" /translation="MRIERTAKTVIAGLMSVACLASVAACGPGSSSNKANTETEAVSTD LGDTKYELKLWDGAGLKTFDDQLIEAFQKKYPNITIKATYDPDNTSQQNGPRIISAADT PDIARITDINSAVRGNHVVNLDAYADAYGWKLPDSQTQVYRVGSDGKIGSGSLYAVPDG VSMTGLYWNKKVAKELGITEAPATVEELEADMKKASDAGKLAMMMPAKEGGTSYIYQAL LTNYEGRDTVQDWIIQKDGATFNTDGAVKAAQKIKDWQDAGYFSSDALALDGSTALSRF CNGEALFFPSGSWYSASINDALGDDAGWIAFPGEKADSGSAAANAVTAFGIPANAKNKN AAAAFLDFLQSDEARQIAVDNGYPPVGEGETPSTDNQLLGQVLTAYEGLVKTGNTTDYI NNATAGMQASAIIPGFQSLIDGTMTPKAFVESIQAQYEKEAK" ORIGIN 1 tcatgattgc acccggaaaa cacgcagttg gccgtactcg atctcgcaag tatgggtttc 61 ccccggattc atatcaatcg tcgcaccatg gtcatcgatg atgcggcaag agcgaccgct 121 agccgtaatg atgccgattt gtggctgccg gcgtaatccg acgaaagcga tgacctgttc 181 tgcgccgaat cttgctgtga caccgagcgc atagcccgca tgttcggggt cattgagcag 241 tgacgcaatg actggtcggg ccggctcatc aggacgcggt aatgtaccat cttcggcaag 301 taaatcacgc aagacagccg catcagtgtg accgcaggca tcggaacaat acactggccc 361 gccgctaagc aatcggagca cggcatggac tcgcgcatgg ggatgctccg tccagaacat 421 gtcccaatca cagtggtaca gctcccccat cagcagtgca cagtatgcgt tctggataag 481 gtgttcgccc agcgaatcag gattgtgcgg cagatagtcg tcgctactac gggtgattgg 541 cgatgaagga cgatgccaat aatcctccgg tgccatgccc atgcagttaa tcaatgcgcc 601 gccgaatcgt cgtgaggtca cttcatcaag cgcctgatgg cgtccccagg tggcttcacc 661 gtaactttcg gcgccacgaa ccattactga cgtagaactt tgcgaatcca ctttgacgaa 721 atcgacgccg gcttcggcga gttcgccgtc ccaggcatcc cagaactgtg cgggttgttc 781 agcacgactt ccaggaatca ggcaaccatt cgccgtggtg gttattgcgg tcgggcagct 841 ggccgcggct acacccgact cgtccaaacc attccaatag ccttggaacg cctgccacac 901 gcctacgctg cgcacgccat agtgcgtttt gagcagcgca atggtgtggg caagcccgtg 961 ggggaaacgt tggcgatccg cgccaaagtc gatcagggtt tcctttgtgc gatccgtgtt 1021 ggaccaaccg tcatcgataa gcacccagga aatgggcaca tgcttggcct ggaactcctc 1081 catcttgttg acgatggcct gctcgttgac atctcgcccc aatgaatccc aagtacacca 1141 tcccaacccg gtgagcgcat ccgggaatgg acgctcctta cgggtgcgaa tacccagctg 1201 gcgtgctgcc gtttgtgtgg cagctcgaat ggccatatac gggtcggatg cgcaagcgat 1261 atatgcggca gtgtcacata gagtcgtgcg accaacccgg ttggaagaca gcacgagccg 1321 caaagccgtg tcatcagatt ctgttgcggg ctgcccgctg aaatcagccc gaatatccgt 1381 gccgcagata gcgaccaaca ctagccactc ggcatcttcg gcatcgttgt tgcgacataa 1441 caataactgc gtgcgttcag gcagttcaaa tggtgtacgc acccaggtcg ggcgcatcca 1501 ccactccttg tgctggtata gcgccagcat ggtgtcatcg ttgccgctgt cgacgctggc 1561 catggtgagc gacacgtcaa tcgcatggtg gggctcaaac gcttgttgtt cctgaaaagc 1621 agcggcgcgg tccttgggct ggggtgcatg cgcgttcaca tcgatacgcc agagtcgcac 1681 ctgagcatca ccctggatac ccgcactgga cgtgcactcg tcttcgcatg attcgggaac 1741 gatcgtgacg gcttctaccg gcagttcaca gattgccgaa gcctgttcgc catagacggc 1801 acgaccggta tcaagatggg ccgttaccgt gcgaacggtt attggacagg tttcggcaat 1861 cattggcgta actccttggt gttcttcaat gagattatgc tggcaaggcc cagacggtag 1921 cagctggagg aacgctctcg acctgagtgt tcgcctgcac agtcgcatca gacacaagta 1981 gcacggtcat cggctgcggc aaggcgactg gttgactgtc agagaagttc gccatcacaa 2041 ccatgccgga cggcaagcgc caaccaagca gcggcgccgg acactcttcg ttggtaagcc 2101 acgagaactg gaagtccgtg ccgttgtcca cccactgttt gcgcaatgcg atggcagcac 2161 gatacaggtg caggacggaa gccccgtcac caatctgacg attagcggca tactgcgcaa 2221 accatgccgg ctggggcagc cacaaagcac cggtggcatt gaagccgaac gccgggccgt 2281 ctgactgcca cggcagcggt acgcggcaac cgtcgcgccc cttgaaataa tgaccggaac 2341 gttcccaatt gggatcctga atttcatctt cggtcaaatc aaagtcctca ggcaaaccaa 2401 gctcttcacc ctgatacaca aaggcggtac ctggcaggcc gagcatcacc agcgctgctg 2461 cacgggcacg acgagcggcg agcgcggggt caatcggcgg attcgtgccg ttggacgtca 2521 cccactgctc gatgtttgca ccgctcggca gtccgagacg cgaggcgata cgtggcacat 2581 cgtggttgcc gagcacccag gtgggggcgg tttcggcagc gagagcatag cgatgcgtgc 2641 gctcaatcgt ggtgcggtat tcttcgcgat tccaggcggc ctttgacatg gagaagtcaa 2701 atacggcacc aagttcatca ggcttggcgt attggaaaat acgggtggtg aatggcgacc 2761 acgattcgcc gaccgcatac ttggctggca tgtactgatt gaacaggtcg cgccattcac 2821 ggtagatatc atgcacggcg tcgcggtccc agagcggatc ggaaccatcg gtagcctgtg 2881 gagacatcag tgtcgggtcg atacggtcgc gcagcggctc acgcaggtct ttggccagac 2941 cgtgcgagac atcgatgcgg aaaccgtcca cgccgcgatc gcaccagaat gtgagtacac 3001 gcaggaactc atgccgcacc tcgggattgt cccaattgag gtccggctgc tccttggcga 3061 acagatgcag gtagtaccag ccgtctccac acgactccca tgcggaaccg ccgaagttac 3121 tcagccagtt ggtaggcggc aattcgccgt gctccccctt gccctgccgg aacacatacc 3181 gttgtgccgt ttccgattcc ggaccttgag ccagggcctc ttggaaccaa cggtgctgat 3241 cggacgtgtg gttcggcacg atgtccacga tgatgccgat accgcgttcg tgcgctttgg 3301 ccactaattc gtcgaactga tcgagtgtgc caaggcgggg atccacatcg caatagtcgg 3361 caacatcata acctccatcc gccagcggcg atggatagaa tggagaaagc cagagcgcgt 3421 ccaccccgag cgcctgcaga tagtcgagac gatcgatcac gccttggaga tcaccgttgc 3481 cgtctccatt ggcatcgctg aatgagcggg ggtaaatctg gtagatgacg gcgtcgcgcc 3541 accagtcatt gttggtgaaa gtcatatcgt tcccctgtcc gattgctcgg tacgtatggt 3601 tttaccagta tggccgcacg aaacactgtt ccggcggcca taccatacat cctcttgcct 3661 tcggatcagc ccttgaccga gccggcaagc atggcgcgga tgaagtagcg ctggaggaag 3721 atgaacagga tcatcgtcgg tgccatgatg agcagtgcgc ccgcgttgag cagcaccacg 3781 tcggtctgat actggccaac gaacgactgt agggcacctg ccatcgtgcg cttgttcggg 3841 tcgttctcca acaccacagc caacaggaac tggttccagg tggccaggaa ggtcagaata 3901 ccgagcgagg agatggctgg cagtgccaac ggcagctgaa tggaacggaa cgtgcgcaga 3961 tggcctgcac catcgatgga tgcggcttcg atcagatcac gcggcatctg ctcgaagcag 4021 gagcgcatcc acacaatacc gaacggaata ttcaggccga tgagcggcag gatcagggca 4081 agacgggtat tcagcaagcc catgccgctg atctcgtagt acagcggagt gaccaaggtt 4141 tcgaacggaa tggtcagacc gacgaggaac agcacgtaga tcaggccctt gcacggcacc 4201 ttgagctgag cgaaggcata accaccgagc gagcagaaga tcaccacgca gggcacgacc 4261 acaatcacca gaatgcagct gttgagcagc agcggggtga tgtttgccat gttccaggcg 4321 tcgatgaagt tctcccagtg cgggtgggca gtgaactgga taccttcggg catggaacct 4381 tgcggctgca atgccgcgga gagcatgctc aagaacggca gtacgcagaa gaggacggtc 4441 agagcgagca tcgccgtgcc ggtgatgcga acggctttgg attgctgcat ggtcactgct 4501 cctttccatt gaccagacgc tgcagaggtc cgacgaccag cagcaccaga atcatcaggg 4561 tgacggcgag cgcggaggcc aagccaacgc tctgctgggt gaaggccaag cggtagacct 4621 gcacgccggg caccatggtg gaggtgccgg ggccgccctg agtggacatg tacaccacgt 4681 cgaagctggc gagcgcggag atgatggtca tggtcaggca tacgccgatt tggccgcgca 4741 gaccaggcaa cgtgatggag aagagctgac gccaccagcc ggcaccgtca agacttgctg 4801 cctcgtacag ggactggtcg atgccgccga tgcccgagag caggagcacc acacagaagc 4861 cgagctgcaa ccagaaacca atcacgccta ccgcgttcag ggaggtggat tggtcgccga 4921 gccacacgtg ggcgaagtcg ccgaggccta ctgcgcgcag cagctgattg gcggtgccct 4981 tgtcggccag catccaggtc caggccacac cggctgcagc gcctgggata acgcgcggca 5041 ggaacaggca aacctgcgcg aaggaacgac cgaccttgga cttcatgtct ttgatgagca 5101 cggcaatgat caggccgagc acaatcggga tgatggagaa gaagatgatc aggtagaagg 5161 agtgcagaat cgatccgtac agatcggggt cggtgaacac ggtgatgtag ttttcgacac 5221 cgatgaaggt gctagcatcg ataccgttcc actcgtagaa cgagtaccag atggtctgaa 5281 tgatcggcca caactcgaag gcgatgtaga acacaagcgc cggagcgagg aaaagcaggc 5341 tgaccagacc gagggacata ttgcgcttgg gcttgaccgc cttggctgcc ttatgggaat 5401 ccatgattgt caccacgctt tgctggtttg gtgtgaactg ggaatcgaac atcgcacaca 5461 acgtcgtgcg cgcgatggga aggaaccagg cggagcggga aaaagggaag aacactccgc 5521 ccggtaagtg caagggttac ttggcttcct tctcgtactg agcctgaatg gattcgacga 5581 atgccttggg ggtcatcgtg ccgtcaatca gggactggaa gccggggata atggcgctgg 5641 cctgcatacc tgcggtggcg ttgttgatgt agtcggtggt gttaccggtc ttcaccagac 5701 cttcgtaggc ggtaaggacc tggccgagaa gctggttatc ggtgctcgga gtctcgcctt 5761 cgccgaccgg cgggtagccg ttgtcaactg cgatctggcg ggcttcgtcg gactggagga 5821 agtcgaggaa ggcggctgca gcgttcttgt tcttggcgtt ggccgggata ccgaaagcgg 5881 tcacggcgtt ggctgcggca gaaccggaat cggccttttc gccggggaag gcgatccagc 5941 cggcgtcatc gccaagtgca tcgttgatgg aggcggagta ccagctgccg gaggggaaga 6001 acagggcttc gccgttgcag aagcggctca gtgcagtgga accgtcaagg gcgagcgcgt 6061 cggaggagaa gtaaccggca tcctgccagt ccttgatctt ctgtgcagcc ttcacggcac 6121 cgtcggtgtt gaaggtggcg ccatccttct ggataatcca atcctgcacg gtatcgcgac 6181 cctcatagtt ggtgagcaat gcctggtaga tgtaggaagt gccgccttcc ttggccggca 6241 tcatcatggc gagcttgcca gcgtcggagg ccttcttcat atcggcctcg agctcttcga 6301 cagtggccgg agcctcggtg atgccgagtt ccttggcgac tttcttgttc cagtacaggc 6361 cggtcatcga gacaccgtcc ggcactgcgt agaggctgcc ggaaccgatc ttaccgtcgg 6421 agcccacgcg gtagacctga gtctgggaat ccggcagctt ccaaccgtaa gcatcggcgt 6481 aagcgtcaag attgacgaca tggttgccac gcacagcgga gttgatgtcg gtgatacggg 6541 caatgtccgg ggtgtcggcg gcggagatga tgcgcgggcc attctgctgg gaggtgttgt 6601 ccggatcgta ggtggccttg atggtgatgt tcgggtactt cttctggaag gcttcgatca 6661 gctggtcatc aaaggtcttc aggccagcgc cgtcccacag cttgagctca tacttggtat 6721 cgccaagatc agtgctcacc gcttcggttt cggtgttggc tttgttgctg gacgagcccg 6781 ggccgcaagc ggcgacggat gccaggcatg ccacagacat cagaccggca ataacggttt 6841 tggcggttcg ttcgatcctc at //