LOCUS CP000303 7519 bp DNA linear BCT 31-JAN-2014 DEFINITION Bifidobacterium breve UCC2003, complete genome. ACCESSION CP000303 VERSION CP000303.1 DBLINK BioProject: PRJNA13487 BioSample: SAMN02604112 KEYWORDS . SOURCE Bifidobacterium breve UCC2003 ORGANISM Bifidobacterium breve UCC2003 Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 7519) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S.C., Reunanen,J., Bottacini,F., Claesson,M.J., O'Brien,F., Flynn,K., Casey,P.G., Moreno Munoz,J.A., Kearney,B., Houston,A.M., O'Mahony,C., Higgins,D.G., Shanahan,F., Palva,A., de Vos,W.M., Fitzgerald,G.F., Ventura,M., O'Toole,P.W. and van Sinderen,D. TITLE Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor JOURNAL Proc. Natl. Acad. Sci. U.S.A. (2011) In press PUBMED 21690406 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 7519) AUTHORS O'Connell Motherway,M., Zomer,A., Leahy,S., Reunanen,J., Bottacini,F., Claesson,M., O'Brien,F., O'Flynn,K., Casey,P., Moreno-Munoz,J., Higgins,D.G., Shanahan,F., de Vos,W., Fitzgerald,G.F., Ventura,M., O'Toole,P. and van Sinderen,D. TITLE Direct Submission JOURNAL Submitted (27-MAR-2006) Department of Microbiology, Alimentary Pharmabiotic Centre, University College Cork, College Road, Cork, Munster, Ireland COMMENT Source DNA or strain is available from Douwe van Sinderen, d.vansinderen@ucc.ie. FEATURES Location/Qualifiers source 1..7519 /organism="Bifidobacterium breve UCC2003" /mol_type="genomic DNA" /strain="UCC2003" /db_xref="taxon:326426" gene complement(1..867) /locus_tag="Bbr_1865" CDS complement(1..867) /locus_tag="Bbr_1865" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q00751|3.A.1.1.28" /protein_id="ABE96527.1" /translation="MTTATVTPSKSGKPAKFRRDHKINWWLTAAVAVLSLTILIPLYFT IVTALKTPAEAGTFALPTSWQWHNFADASAKVNYPKAALNSAIITVAAVVLTLLTNTFV AYAVARNMDKRFFRFLYYFFIAAMFVPFPVIMLPIAKQMGSLHLDNQVGLIILYTVLGL GTNLFIATGFIRSIPVSLEEAARIDGASTWRIFWTIIFPLMSPINATIAILTALWAWND FLLPLIILTDQSNQTIPLAQYVFSSQFATNYPMAFSSYLMAMAPILIVYIFAQKWVVGG VMRGAVK" gene complement(886..1833) /locus_tag="Bbr_1866" CDS complement(886..1833) /locus_tag="Bbr_1866" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q00750|3.A.1.1.28" /protein_id="ABE96528.1" /translation="MSHATATKTAAPAAKSAAKKPKKKVSAFSTRKVDPAYYWMAVPAA IIFAFFLYLPFLDGVKYSFTNSQGYGDYKFIGLKNYIALFQDNRVGHAYLFTFFIAILI TVLINVIALFLSVMLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMNPLPELGKAL GIKWLSTSLLTNEQLSWIPIVFLAVWQGIAYSVLIYLAGLQTIDDEIYEAAAIDGVNPW QKFWKITFPLIGPFFTINLVLSMKNALGTFDQVVALTEGGPNSSTETVTYLIWKGGLTG GEYAYQTANAVLFFIVLAIIAFVQLRISRSQEQI" gene complement(1855..3144) /locus_tag="Bbr_1867" CDS complement(1855..3144) /locus_tag="Bbr_1867" /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q00749|3.A.1.1.28" /protein_id="ABE96529.1" /translation="MLSDSPHSTPRLKRLAVRTAAVACAIAVGFGLAGCGSSTAGTVTL DFFQFKSEAADQFKSMVADFEKQNPTIKVNINNSANAQTDLRTRFVKNRVPDVITFNGD ISFGNFAASGVFYDFTDEPIVDTLNPGMVQIAKNLVQTTDSSKKRLYGLPFAGNASGYI YNKALFRKVGLDPENPPTTWAEFTDMLNTFKDAGINPLQGTVADAWTTQAPLASLTGTL VPESKYTELKQGKTTFQELWKTAVEKESELFTYSTADTGVTYQQGTQNFAQGKAAIIPL GTYAIPQILLINPDIELGFAQMPATDDASEQILTAGDDVMLTIGANTKYPEESMKLVEF LMQKDQLDAYADAQSAITPLKDTYFGNEALETVRPFFEENRLADFCDHYIPSSINIGGY LQTMVTSGNTDRFLNQMQTEWDKVQARTFE" gene 3317..4525 /locus_tag="Bbr_1868" CDS 3317..4525 /locus_tag="Bbr_1868" /codon_start=1 /transl_table=11 /product="Transcriptional repressor, ROK family" /protein_id="ABE96530.1" /translation="MSDANAIPQWFSGSEHTHRVAAAIAQYGPIARTTLAQMLGLSQGA LSRITSDLIYAGVIEELPAVAGTTGKLPERFTPKESSDRRGRPQTALVLCSNARTFVGV KVHGTSIVSAAVNAHGEVVSGRHEIPIGADQSAEYVTSSIATLVRECSDDVAATGLPAP TAVGVAVGGHVIDDSIVTFAPFLHWEGTTDLGAMVYEATGLPCGVFNDIDSLLVDASWF GPGVGVDTFAVVTIGVGVGYSLAVHGEPVSYPDKSFGLVGHVLIDPEGPRCPSGHIGCS QCLTDDSIAEQYSAIIGRAVTFDDFAHDARAHVPQASQLVHRTCFRLGSLVATVANIAM PGHVMIAGESAFLAKLGTDSLRDGIRFYRHSQTQPVKFTIMDHDWQLWAKAAASRVIVK HIG" gene complement(4638..6953) /gene="aga" /locus_tag="Bbr_1869" CDS complement(4638..6953) /gene="aga" /locus_tag="Bbr_1869" /EC_number="3.2.1.22" /codon_start=1 /transl_table=11 /product="GH36" /protein_id="ABE96531.1" /translation="MAQNTATFTGTAADGTALTAIYLVQPDANVAIGLVAAGDDLPRII HWGRPLSNPETLLAAYDALKPQRVSGALDDTAWPSILPTQAESWIGEQRVVLRRDGIEL FPKFTVTGMKFDGVVAASLDAVSGDSYTDVTGRARTTGPANVPGVAITARDEEQGVELE WHLELLPGGLARQKAIVTNLFGAEAGAEAPLEIGKIELGFPLPESASEILTTTGHHLRE RSPQRQPLTIGRFEKPQLAGRPDFDASLLLTAGVPGFGFEHGEAYSVHVGWSGNSVLSA ERLPYTQGVIGGGELLFGGEVTLDDAAGEGQSSYETPWLFGSFGDGLNEIAARFHSYVR SLHPRLFSHGRPVILNTWEAVYFDHNFDTLKALADKAAASGVERFVVDDGWFGSRRDDT SGLGDWQISQDVWPDGPKSLKALADYVHAKGMEFGLWFEPEMVNPDSDVARNHPDWILS PTAGRLPLQGRTQQVLDLTNPEAFDYIYSCMDQLVGELGIDYIKWDHNKLVTEPGSRRS GRPAVHAQTIAVYEIFRGLKTAHPGLEIESCSSGGGRVDLGILEYADRIWVSDCVDPVE RADIQRYTSLLVPPAMMGEHVGASPAHSTRRETSQELRMAMAFFGHMGIEWNLLKEPDD ALAKLAVWVAEFKKHRDWFAIDTCVHADSSDPAVRLDGMVMPNRNAAIYRFAQLTTSQT YPAAPVHLPGLDPKRKYRISPLDPSLDLEGLTNGQSTLGWWNEEGVVLTGEALQRYGIR PPSLHPQQAVLFKAVALS" gene complement(7070..7519) /gene="mesJ" /locus_tag="Bbr_1870" CDS complement(7070..7519) /gene="mesJ" /locus_tag="Bbr_1870" /EC_number="3.5.4.-" /codon_start=1 /transl_table=11 /product="tRNA-specific adenosine deaminase" /protein_id="ABE96532.1" /translation="MGYDEMMHGALELAKRAAAAGDVPVGAVVVNADGQIIGRGYNTRE ADGDPLAHAEIIAMREAARALGSWNLSDCTLAVTLEPCPMCAGACIQTHIGTIVFGAWD SKLGACGSIWDIPRDPHIGHAPEVHGGVAEADCQTLLSTFFAHRR" ORIGIN 1 ctacttcaca gcgcccctca tcactccgcc cacgacccac ttttgggcga agatgtagac 61 gatgaggatc ggggccatgg ccatcagata gctggagaat gccatcgggt agttggtggc 121 aaactgcgag ctgaagacgt actgggcgag cgggatggtc tggttcgact ggtcggtcag 181 aatgatcaac ggcaggagga agtcgttcca ggcccacagc gcggtcagaa tggcgatggt 241 ggcgttaatc gggctcatca gcgggaagat gatggtccag aaaatgcgcc acgtggacgc 301 gccatcgatg cgggccgcct cttccagcga aaccggaatc gagcggatga agccggtggc 361 gatgaacagg ttcgtgccca ggccgagcac cgtgtacagg atgatcaggc cgacctggtt 421 gtctaggtgc agggaaccca tctgcttcgc aatcggcagc atgatgaccg ggaacggcac 481 gaacatggcg gcgatgaaga agtagtacag gaagcggaag aagcgcttgt ccatgttgcg 541 ggccacggcg taggccacga aggtgttggt cagcagggtg agcaccacgg cggccaccgt 601 gatgatcgcg gagttgagcg cggccttcgg gtagttgacc ttggcggagg cgtcggcgaa 661 gttatgccac tgccacgagg tgggcagagc gaaggtgccg gcttcggccg gggtcttcag 721 cgcggtgacg atggtgaagt agagcgggat cagaatggtc aggctcagca cggccacggc 781 ggcggtcagc caccagttga tcttgtggtc cctgcggaac ttggcgggct tgccggactt 841 ggacggggta actgttgcag tagtcatttc ttatcctccc ctaaatcaga tctgttcctg 901 gctgcgggag atgcgcagct gcacgaaggc gatgatcgcc agcacgatga agaagagcac 961 ggcgtttgcg gtctggtagg cgtactcgcc accggtcagg ccacccttcc aaatgaggta 1021 ggtgacggtt tcggtggagg agttcggacc gccctcggtc aaggcgacga cctgatcgaa 1081 ggtgccgagc gcgttcttca tggacagcac gaggttgatg gtgaagaacg gtccgatcag 1141 cgggaaggtg atcttccaga acttctgcca gggattgacg ccgtcgatgg cggcggcctc 1201 gtagatttca tcgtcaatgg tctgcagacc agcgaggtag atgagcaccg agtaggcgat 1261 gccctgccag acggcgagga aaacaatcgg gatccagctg agctgctcat tggtcagcag 1321 cgaagtggac agccacttga tgcccagcgc cttgccaagc tcgggcaacg ggttcatgaa 1381 gatgtacttg aacacgtagc cgatgaccaa cacggagagg gtgtagggaa tgaagaagat 1441 ggcacggaag ccgtttttga aggcgatctt cgagttcagc atcaccgata ggaacagggc 1501 aatcacattg atcagcactg tgatgagaat ggcgatgaag aatgtgaaca ggtaggcgtg 1561 gcccacacgg ttgtcttgaa agagagcgat gtagttcttc aggccgatga acttgtagtc 1621 gccgtatccc tgcgaattgg tgaaggaata ctttacgccg tcaagaaatg gcaggtagag 1681 gaagaaggcg aaaatgatag ccgccggaac cgccatccaa taataggcgg ggtccacttt 1741 gcgggtggag aaggcggaaa ccttcttctt gggtttcttg gcagcggact tagcggccgg 1801 agcagcggtc ttagttgcag ttgcgtgtga catgatgttc tcctctccta ccgatcactc 1861 gaaggtcctg gcttggacct tgtcccattc ggtctgcatc tggttcagga agcggtcggt 1921 gttgccggag gtcaccatgg tctgcaggta gccgccgata ttgatggacg aaggaatgta 1981 gtgatcgcag aagtcggcca gtcggttttc ctcgaagaac gggcgcacgg tttccagcgc 2041 ctcattgccg aagtaggtgt ccttcagcgg cgtgatggcg gactgggcgt cggcgtaggc 2101 gtcgagctga tccttctgca tgaggaattc gacgagtttc attgattctt cggggtactt 2161 ggtgtttgcg ccgatggtca gcatcacatc atcgcctgcg gtgaggatct gctcgctggc 2221 gtcatcggtg gccggcatct gggcgaaacc aagttcaatg tccgggttga tgagcaggat 2281 ctgtggaatg gcgtaggtac cgagcgggat gatcgcggcc ttgccttggg cgaagttctg 2341 cgtgccctgc tggtaggtga cgccagtatc ggcagtggag taggtgaaga gttcggattc 2401 cttctcgact gcggttttcc acagttcctg gaatgtggtc ttgccttgct tgagctcagt 2461 gtacttcgac tcgggaacca gcgtaccggt cagcgaggcg agcggggcct gggtggtcca 2521 ggcgtcggcc actgtgccct gcaacggatt gatgccggcg tccttgaagg tgttgagcat 2581 gtcggtgaat tcggcccacg tggtcggcgg gttctccggg tcgagaccta ccttgcggaa 2641 cagcgccttg ttgtagatgt aaccggaggc gttgccggca aagggcagac catacaggcg 2701 cttcttggag gaatcggtgg tctgcaccag gtttttggcg atctgcacca tgccggggtt 2761 gagggtgtcc acgatgggct cgtcggtgaa gtcgtagaaa acaccggatg cggcgaagtt 2821 gccgaagctg atgtcgccgt tgaaggtgat tacgtccggc acgcggttct tgacgaagcg 2881 ggtgcgtaga tcggtctggg cgttggcgga gttgttgatg ttgaccttga tggtcgggtt 2941 ctgcttttcg aagtcggcga ccatggattt gaactggtct gcagcctcgg acttgaactg 3001 gaagaaatcc agcgtaacgg tacctgcggt gctcgatccg cagcctgcca ggccgaagcc 3061 gacggcgata gcgcacgcca cagcagcagt gcgcacggcc agacgcttca gtctaggcgt 3121 tgaatgtggg gaatcggaca gcatattgtt gactccttta tctttttcct tccggcttca 3181 gcgccggcgg ctcttccact ttcaaaagta acgattgcgc catttcattc ccagcgccag 3241 cgagcccact tgcgcaagaa acaaaaagcg cggtattttg tgattaacgc aataaataat 3301 gcaaaggggc ttaagtatgt ctgacgccaa tgcgattccg caatggtttt ccggatccga 3361 gcatacgcat cgcgtggcgg cagccatcgc ccaatatggg ccgattgcgc gcaccacatt 3421 ggcacagatg ctgggattga gccagggtgc gctctcccgc attaccagcg atttgattta 3481 tgccggagtc atcgaagaac tgccggctgt ggccggaact acaggcaagc tgcctgaacg 3541 ttttactccc aaggagagct cggatcgtcg cggccggccg cagaccgcat tggtattatg 3601 ctcgaacgca cgcaccttcg taggcgtcaa agtgcacggc acatccattg tgtcggccgc 3661 cgtgaacgcg catggcgagg tggtttccgg ccggcatgag ataccaattg gtgctgatca 3721 gtcggcagaa tatgtgacat cgtcgatagc cacgctggtt cgtgaatgct ctgatgatgt 3781 cgccgccacc ggcctgcccg ctcccactgc cgtgggcgta gcggtcggag gtcacgtgat 3841 cgatgattcc atcgtcacgt tcgccccatt cctgcactgg gagggcacca cagatttagg 3901 cgcaatggtg tacgaggcca ccggattgcc atgcggcgta ttcaacgata tcgattcgct 3961 gctggtggat gcctcctggt tcgggccggg agtgggcgtg gatacgttcg ccgtagtgac 4021 catcggcgtg ggcgtgggct attcgctggc tgtgcatggc gaaccggtca gttacccgga 4081 caagagtttt ggcctagtgg ggcatgtgct catcgacccg gagggcccgc gctgccccag 4141 tgggcatatc gggtgttcgc aatgcctgac tgacgattcg attgcggaac agtattcggc 4201 gatcatcggc cgcgcagtga ccttcgatga ttttgcgcac gatgccagag cccatgtgcc 4261 gcaagcctcc cagctagtgc accgcacttg cttccgattg ggatcgctgg tggccaccgt 4321 ggcgaacatc gctatgccgg ggcatgtaat gatcgccggc gaatcggcat ttttggcgaa 4381 gcttggtacc gattcgctgc gtgacggcat ccgcttctat cggcatagcc aaactcaacc 4441 ggtgaagttc acgattatgg atcacgactg gcagctctgg gccaaagccg ctgccagccg 4501 tgtaatcgtg aagcatattg ggtaggtcac tccgccacga ccagcaatta cggacttgcc 4561 tatcggcaag gctcaatccc accttcactc agctatcgct tcgctcaggc catggctact 4621 gacagcccac tgggctgtca gcttaacgcc acggccttga acagtactgc ctgctgaggg 4681 tggagggacg ggggacggat gccgtagcgc tgcagggctt cgccggtcag gactacgcct 4741 tcttcgttcc accaaccgag ggtgctttga ccattggtca gaccttcgag gtccaggctt 4801 gggtcgagcg ggctaatgcg atacttgcgc ttggggtcaa ggccaggcag atgcacggga 4861 gcggcaggat aggtctggct cgtggtcagc tgggcgaagc ggtagatggc agcattgcgg 4921 ttcggcatca ccatgccatc gaggcgcacg gccggatcgc tggagtcggc gtgcacgcag 4981 gtatcgatgg cgaaccaatc acgatgcttc ttgaactcgg ccacccacac tgccagcttg 5041 gcaagtgcat cgtccggctc cttgagcagg ttccattcga tgcccatgtg cccgaagaat 5101 gccatcgcca tgcgcaattc ctgactggtc tcacgacgag tggagtgcgc ggggctggca 5161 cccacatgct cgcccatcat ggcaggcggc acaagcagtg atgtgtaacg ctggatgtcc 5221 gcgcgttcga ccggatccac gcaatcggac acccagatac ggtcggcgta ttcgaggata 5281 ccgagatcca cacggccgcc accggaagag cagctttcga tttcgagacc cgggtgagcg 5341 gtcttgaggc ccctgaaaat ctcatagacg gcaatagttt gcgcatgcac ggccggacgg 5401 ccggagcggc gagaaccggg ctcagtgacc agcttgttgt gatcccattt gatgtagtcg 5461 atgccgagct cgccgacgag ctgatccatg cagctgtaaa tgtaatcgaa agcttccgga 5521 ttggtcaggt cgagcacttg ctgagtgcgg ccctgcagcg gcagacggcc ggcagtgggc 5581 gaaagaatcc aatcagggtg gttgcgggcc acgtcggaat cggggttgac catttccggc 5641 tcgaaccaca ggccgaactc catgcccttg gcatgcacat aatcggcgag cgccttgagg 5701 gacttcgggc catcgggcca tacgtcctga gaaatctgcc agtcgccaag gccggaggtg 5761 tcgtcgcggc gagaaccgaa ccaaccgtca tccaccacga atcgttccac accagaagcg 5821 gctgccttgt cggcgagcgc cttgagcgta tcgaagttgt ggtcgaagta cacggcttcc 5881 caggtgttga ggattaccgg acggccgtgc gagaacaagc gcgggtgtaa agaacgcaca 5941 taggagtgga agcgtgcggc aatctcgttc agaccatcgc cgaaggagcc gaacagccat 6001 ggggtttcgt aagagctctg gccttcgccg gctgcatcat caagcgttac ttcgccgcca 6061 aacagcagct cgccgccgcc aatcacaccc tgcgtgtacg gcagtcgctc ggcggacagc 6121 acggagttgc cgctccagcc cacgtgcacc gagtaggctt cgccatgctc gaagccgaag 6181 ccgggaacgc cggcggtaag cagcagggag gcgtcgaaat cagggcgacc cgcgagctgc 6241 ggcttctcaa aacgtccgat ggtgagcggc tgacgctgcg ggctgcgttc gcgaagatgg 6301 tggccggtgg tggtcaggat ttcggatgcg gattcgggta gcgggaaacc gagctcgatc 6361 ttgccgattt ccagcggggc ctcggcaccg gcttctgctc cgaacaggtt ggtcacgatg 6421 gccttctgac gggccaaacc accgggcaga agttcgagat gccattcgag ttccacgcct 6481 tgctcttcgt cgcgcgcagt gattgccacg ccgggcacgt tggccgggcc agtggtacgg 6541 gcacgtccag tcacatcggt gtagctgtcg ccggacacag catcgaggct agcagccacc 6601 acgccgtcga atttcatacc ggtcacggtg aacttgggga agagttcgat gccgtcgcgg 6661 cgcagcacca cacgctgctc gccaatccag ctttcggcct gtgtcggcag gatggacggc 6721 caggcggtgt catcgagtgc accggaaacg cgctgcggct tgagtgcatc atacgcagcg 6781 agcaaggtct caggattgct cagcgggcga ccccaatgaa tgatacgcgg caggtcatcg 6841 ccggcagcga ccagaccgat tgccacgttg gcatcgggct gtacaagata gatggcggtg 6901 agcgcggttc cgtcagcggc ggtaccggtg aaggtggcgg tgttctgggc catagtgtct 6961 ccttcgacgt atacggaatg cattgaacta ctgattgtga tagtagaaga agtagaatat 7021 gttgccttgg tgccgcgtgt tggatggatg aagtaagtat ttgagcgatt taccgccgat 7081 gagcgaagaa cgtgctgagg agagtctggc aatcggcttc tgccacgccg ccatgcactt 7141 caggggcgtg accaatatgg ggatcgcgcg ggatatccca gattgacccg caagcaccga 7201 gcttggagtc ccacgcgcca aacacgatgg tgccgatatg ggtttggatg catgcgccgg 7261 cgcacatcgg gcaaggctca agcgtaacag ccagtgtgca atcggagaga ttccacgagc 7321 ctaatgcgcg ggcggcctca cgcatggcaa tgatttcggc atgcgccagt ggatcgccat 7381 cggcctcgcg tgtgttgtat cctcgcccga taatctgtcc gtcggcgttc accaccactg 7441 cgccaaccgg cacatcgccg gctgccgcgg cccttttggc gagctccagc gcgccgtgca 7501 tcatctcgtc atatcccat //