##gff-version 3
##sequence-region NC_011898 1 35235
# conversion-by bp_genbank2gff3.pl
# organism Ruminiclostridium cellulolyticum H10
# Note Ruminiclostridium cellulolyticum H10, complete sequence.
# date 04-FEB-2020
NC_011898	GenBank	region	1	35235	.	+	1	ID=NC_011898;Dbxref=BioProject:PRJNA224116,taxon:394503;Name=NC_011898;Note=Ruminiclostridium cellulolyticum H10%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 3,537 CDSs (total) :: 3,447 Genes (coding) :: 3,334 CDSs (with protein) :: 3,334 Genes (RNA) :: 90 rRNAs :: 8,8,8 (5S,16S,23S) complete rRNAs :: 8,8,8 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP001348. URL -- http://www.jgi.doe.gov JGI Project ID: 4002584 Source DNA and bacteria available from Jizhong Zhou (jzhou@rccc.ou.edu) Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/04/2020 07:32:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 3%2C537 CDSs (total) :: 3%2C447 Genes (coding) :: 3%2C334 CDSs (with protein) :: 3%2C334 Genes (RNA) :: 90 rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) complete rRNAs :: 8%2C 8%2C 8 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 113 CDSs (without protein) :: 113 Pseudo Genes (ambiguous residues) :: 0 of 113 Pseudo Genes (frameshifted) :: 37 of 113 Pseudo Genes (incomplete) :: 81 of 113 Pseudo Genes (internal stop) :: 17 of 113 Pseudo Genes (multiple problems) :: 20 of 113 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;culture_collection=ATCC:35319;date=04-FEB-2020;mol_type=genomic DNA;organism=Ruminiclostridium cellulolyticum H10;strain=H10;type_material=type strain of Ruminiclostridium cellulolyticum
NC_011898	GenBank	gene	1	1467	.	+	1	ID=CCEL_RS06150;Name=CCEL_RS06150;old_locus_tag=Ccel_1227
NC_011898	GenBank	mRNA	1	1467	.	+	1	ID=CCEL_RS06150.t01;Parent=CCEL_RS06150
NC_011898	GenBank	CDS	1	1467	.	+	1	ID=CCEL_RS06150.p01;Parent=CCEL_RS06150.t01;Name=CCEL_RS06150;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020815941.1;old_locus_tag=Ccel_1227;product=HAMP domain-containing protein;protein_id=WP_015924732.1;transl_table=11;translation=length.488
NC_011898	GenBank	exon	1	1467	.	+	1	Parent=CCEL_RS06150.t01
NC_011898	GenBank	gene	1489	3087	.	+	1	ID=CCEL_RS06155;Name=CCEL_RS06155;old_locus_tag=Ccel_1228
NC_011898	GenBank	mRNA	1489	3087	.	+	1	ID=CCEL_RS06155.t01;Parent=CCEL_RS06155
NC_011898	GenBank	CDS	1489	3087	.	+	1	ID=CCEL_RS06155.p01;Parent=CCEL_RS06155.t01;Name=CCEL_RS06155;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020815940.1;old_locus_tag=Ccel_1228;product=response regulator;protein_id=WP_015924733.1;transl_table=11;translation=length.532
NC_011898	GenBank	exon	1489	3087	.	+	1	Parent=CCEL_RS06155.t01
NC_011898	GenBank	gene	3660	5267	.	+	1	ID=CCEL_RS06160;Name=CCEL_RS06160;old_locus_tag=Ccel_1229
NC_011898	GenBank	mRNA	3660	5267	.	+	1	ID=CCEL_RS06160.t01;Parent=CCEL_RS06160
NC_011898	GenBank	CDS	3660	5267	.	+	1	ID=CCEL_RS06160.p01;Parent=CCEL_RS06160.t01;Name=CCEL_RS06160;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004617602.1;old_locus_tag=Ccel_1229;product=carbohydrate-binding protein;protein_id=WP_015924734.1;transl_table=11;translation=length.535
NC_011898	GenBank	exon	3660	5267	.	+	1	Parent=CCEL_RS06160.t01
NC_011898	GenBank	gene	5373	6998	.	+	1	ID=CCEL_RS06165;Name=CCEL_RS06165;old_locus_tag=Ccel_1230
NC_011898	GenBank	mRNA	5373	6998	.	+	1	ID=CCEL_RS06165.t01;Parent=CCEL_RS06165
NC_011898	GenBank	CDS	5373	6998	.	+	1	ID=CCEL_RS06165.p01;Parent=CCEL_RS06165.t01;Name=CCEL_RS06165;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020815939.1;old_locus_tag=Ccel_1230;product=carbohydrate-binding protein;protein_id=WP_015924735.1;transl_table=11;translation=length.541
NC_011898	GenBank	exon	5373	6998	.	+	1	Parent=CCEL_RS06165.t01
NC_011898	GenBank	gene	7066	8640	.	+	1	ID=CCEL_RS06170;Name=CCEL_RS06170;old_locus_tag=Ccel_1231
NC_011898	GenBank	mRNA	7066	8640	.	+	1	ID=CCEL_RS06170.t01;Parent=CCEL_RS06170
NC_011898	GenBank	CDS	7066	8640	.	+	1	ID=CCEL_RS06170.p01;Parent=CCEL_RS06170.t01;Name=CCEL_RS06170;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312551.1;old_locus_tag=Ccel_1231;product=family 43 glycosylhydrolase;protein_id=WP_015924736.1;transl_table=11;translation=length.524
NC_011898	GenBank	exon	7066	8640	.	+	1	Parent=CCEL_RS06170.t01
NC_011898	GenBank	gene	8663	10135	.	+	1	ID=CCEL_RS06175;Name=CCEL_RS06175;old_locus_tag=Ccel_1232
NC_011898	GenBank	mRNA	8663	10135	.	+	1	ID=CCEL_RS06175.t01;Parent=CCEL_RS06175
NC_011898	GenBank	CDS	8663	10135	.	+	1	ID=CCEL_RS06175.p01;Parent=CCEL_RS06175.t01;Name=CCEL_RS06175;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312552.1;old_locus_tag=Ccel_1232;product=carbohydrate-binding protein;protein_id=WP_015924737.1;transl_table=11;translation=length.490
NC_011898	GenBank	exon	8663	10135	.	+	1	Parent=CCEL_RS06175.t01
NC_011898	GenBank	gene	10211	12451	.	+	1	ID=CCEL_RS06180;Name=CCEL_RS06180;old_locus_tag=Ccel_1233
NC_011898	GenBank	mRNA	10211	12451	.	+	1	ID=CCEL_RS06180.t01;Parent=CCEL_RS06180
NC_011898	GenBank	CDS	10211	12451	.	+	1	ID=CCEL_RS06180.p01;Parent=CCEL_RS06180.t01;Name=CCEL_RS06180;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312553.1;old_locus_tag=Ccel_1233;product=family 43 glycosylhydrolase;protein_id=WP_015924738.1;transl_table=11;translation=length.746
NC_011898	GenBank	exon	10211	12451	.	+	1	Parent=CCEL_RS06180.t01
NC_011898	GenBank	gene	12535	14145	.	+	1	ID=CCEL_RS06185;Name=CCEL_RS06185;old_locus_tag=Ccel_1234
NC_011898	GenBank	mRNA	12535	14145	.	+	1	ID=CCEL_RS06185.t01;Parent=CCEL_RS06185
NC_011898	GenBank	CDS	12535	14145	.	+	1	ID=CCEL_RS06185.p01;Parent=CCEL_RS06185.t01;Name=CCEL_RS06185;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312554.1;old_locus_tag=Ccel_1234;product=carbohydrate-binding protein;protein_id=WP_015924739.1;transl_table=11;translation=length.536
NC_011898	GenBank	exon	12535	14145	.	+	1	Parent=CCEL_RS06185.t01
NC_011898	GenBank	gene	14220	15749	.	+	1	ID=CCEL_RS06190;Name=CCEL_RS06190;old_locus_tag=Ccel_1235
NC_011898	GenBank	mRNA	14220	15749	.	+	1	ID=CCEL_RS06190.t01;Parent=CCEL_RS06190
NC_011898	GenBank	CDS	14220	15749	.	+	1	ID=CCEL_RS06190.p01;Parent=CCEL_RS06190.t01;Name=CCEL_RS06190;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312555.1;old_locus_tag=Ccel_1235;product=family 43 glycosylhydrolase;protein_id=WP_015924740.1;transl_table=11;translation=length.509
NC_011898	GenBank	exon	14220	15749	.	+	1	Parent=CCEL_RS06190.t01
NC_011898	GenBank	gene	15838	18705	.	+	1	ID=CCEL_RS06195;Name=CCEL_RS06195;old_locus_tag=Ccel_1236
NC_011898	GenBank	mRNA	15838	18705	.	+	1	ID=CCEL_RS06195.t01;Parent=CCEL_RS06195
NC_011898	GenBank	CDS	15838	18705	.	+	1	ID=CCEL_RS06195.p01;Parent=CCEL_RS06195.t01;Name=CCEL_RS06195;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312556.1;old_locus_tag=Ccel_1236;product=hypothetical protein;protein_id=WP_015924741.1;transl_table=11;translation=length.955
NC_011898	GenBank	exon	15838	18705	.	+	1	Parent=CCEL_RS06195.t01
NC_011898	GenBank	gene	18814	20628	.	+	1	ID=CCEL_RS06200;Name=CCEL_RS06200;old_locus_tag=Ccel_1237
NC_011898	GenBank	mRNA	18814	20628	.	+	1	ID=CCEL_RS06200.t01;Parent=CCEL_RS06200
NC_011898	GenBank	CDS	18814	20628	.	+	1	ID=CCEL_RS06200.p01;Parent=CCEL_RS06200.t01;Name=CCEL_RS06200;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004616906.1;old_locus_tag=Ccel_1237;product=carbohydrate-binding protein;protein_id=WP_015924742.1;transl_table=11;translation=length.604
NC_011898	GenBank	exon	18814	20628	.	+	1	Parent=CCEL_RS06200.t01
NC_011898	GenBank	gene	20658	24026	.	+	1	ID=CCEL_RS06205;Name=CCEL_RS06205;old_locus_tag=Ccel_1238
NC_011898	GenBank	mRNA	20658	24026	.	+	1	ID=CCEL_RS06205.t01;Parent=CCEL_RS06205
NC_011898	GenBank	CDS	20658	24026	.	+	1	ID=CCEL_RS06205.p01;Parent=CCEL_RS06205.t01;Name=CCEL_RS06205;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004616907.1;old_locus_tag=Ccel_1238;product=carbohydrate-binding protein;protein_id=WP_015924743.1;transl_table=11;translation=length.1122
NC_011898	GenBank	exon	20658	24026	.	+	1	Parent=CCEL_RS06205.t01
NC_011898	GenBank	gene	24090	27137	.	+	1	ID=CCEL_RS06210;Name=CCEL_RS06210;old_locus_tag=Ccel_1239
NC_011898	GenBank	mRNA	24090	27137	.	+	1	ID=CCEL_RS06210.t01;Parent=CCEL_RS06210
NC_011898	GenBank	CDS	24090	27137	.	+	1	ID=CCEL_RS06210.p01;Parent=CCEL_RS06210.t01;Name=CCEL_RS06210;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014312558.1;old_locus_tag=Ccel_1239;product=carbohydrate-binding protein;protein_id=WP_015924744.1;transl_table=11;translation=length.1015
NC_011898	GenBank	exon	24090	27137	.	+	1	Parent=CCEL_RS06210.t01
NC_011898	GenBank	gene	27198	29540	.	+	1	ID=CCEL_RS06215;Name=CCEL_RS06215;old_locus_tag=Ccel_1240
NC_011898	GenBank	mRNA	27198	29540	.	+	1	ID=CCEL_RS06215.t01;Parent=CCEL_RS06215
NC_011898	GenBank	CDS	27198	29540	.	+	1	ID=CCEL_RS06215.p01;Parent=CCEL_RS06215.t01;Name=CCEL_RS06215;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015924745.1;old_locus_tag=Ccel_1240;product=carbohydrate-binding protein;protein_id=WP_015924745.1;transl_table=11;translation=length.780
NC_011898	GenBank	exon	27198	29540	.	+	1	Parent=CCEL_RS06215.t01
NC_011898	GenBank	gene	29757	33251	.	+	1	ID=CCEL_RS06220;Name=CCEL_RS06220;old_locus_tag=Ccel_1241
NC_011898	GenBank	mRNA	29757	33251	.	+	1	ID=CCEL_RS06220.t01;Parent=CCEL_RS06220
NC_011898	GenBank	CDS	29757	33251	.	+	1	ID=CCEL_RS06220.p01;Parent=CCEL_RS06220.t01;Name=CCEL_RS06220;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020816936.1;old_locus_tag=Ccel_1241;product=carbohydrate-binding protein;protein_id=WP_015924746.1;transl_table=11;translation=length.1164
NC_011898	GenBank	exon	29757	33251	.	+	1	Parent=CCEL_RS06220.t01
NC_011898	GenBank	gene	33346	35235	.	+	1	ID=CCEL_RS06225;Name=CCEL_RS06225;old_locus_tag=Ccel_1242
NC_011898	GenBank	mRNA	33346	35235	.	+	1	ID=CCEL_RS06225.t01;Parent=CCEL_RS06225
NC_011898	GenBank	CDS	33346	35235	.	+	1	ID=CCEL_RS06225.p01;Parent=CCEL_RS06225.t01;Name=CCEL_RS06225;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020816935.1;old_locus_tag=Ccel_1242;product=carbohydrate-binding protein;protein_id=WP_015924747.1;transl_table=11;translation=length.629
NC_011898	GenBank	exon	33346	35235	.	+	1	Parent=CCEL_RS06225.t01