LOCUS NC_008618 6814 bp DNA linear CON 01-AUG-2019 DEFINITION Bifidobacterium adolescentis ATCC 15703 DNA, complete genome. ACCESSION NC_008618 VERSION NC_008618.1 DBLINK BioProject: PRJNA224116 BioSample: SAMD00061080 Assembly: GCF_000010425.1 KEYWORDS RefSeq. SOURCE Bifidobacterium adolescentis ATCC 15703 ORGANISM Bifidobacterium adolescentis ATCC 15703 Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 AUTHORS Suzuki,T., Tsuda,Y., Kanou,N., Inoue,T., Kumazaki,K., Nagano,S., Hirai,S., Tanaka,K. and Watanabe,K. TITLE Bifidobacterium adolescentis complete genome sequence JOURNAL Published Only in Database (2006) REFERENCE 2 (bases 1 to 6814) AUTHORS Suzuki,T., Tsuda,Y., Kanou,N., Inoue,T., Kumazaki,K., Nagano,S., Hirai,S., Tanaka,K. and Watanabe,K. TITLE Direct Submission JOURNAL Submitted (04-DEC-2006) Contact:Tohru Suzuki Gifu University, Life Science Research Center; 1-1 Yanagido, Gifu, Gifu 501-1193, Japan COMMENT ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 07/29/2019 20:29:45 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Method :: Best-placed reference protein Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; Genes (total) :: 1,755 CDSs (total) :: 1,682 Genes (coding) :: 1,619 CDSs (with protein) :: 1,619 Genes (RNA) :: 73 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 3 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 29 of 63 Pseudo Genes (incomplete) :: 42 of 63 Pseudo Genes (internal stop) :: 10 of 63 Pseudo Genes (multiple problems) :: 16 of 63 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## REFSEQ INFORMATION: The reference sequence was derived from AP009256. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation Pipeline (PGAP) set; GeneMarkS-2+ repeat_region COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6814 /organism="Bifidobacterium adolescentis ATCC 15703" /mol_type="genomic DNA" /strain="ATCC 15703" /type_material="type strain of Bifidobacterium adolescentis" /db_xref="taxon:367928" gene complement(1..1527) /locus_tag="BAD_RS08450" /old_locus_tag="BAD_1604" /db_xref="GeneID:4556274" CDS complement(1..1527) /locus_tag="BAD_RS08450" /old_locus_tag="BAD_1604" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003806584.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="gnl|TC-DB|Q9X761|2.A.2.2.3" /protein_id="WP_011743896.1" /db_xref="GeneID:4556274" /translation="MSNETTTADGGVRKKGKLGQRIAYACGNLGQAAFYNAMSTYFIVY VTGCLFSGVDKALAAKLIGVITSLVVIIRIAEIFIDPLLGNLIDNTNTKWGRFRPWQFF GGLISAVLLAVIFSGMFGLVNVNTTLFIVLFVITFVVLDVFYSLRDISYWGMIPALSSD SHERSTYTALGSFTGSIGYNGITVVVIPIVSYFTWTLTGAKGEGQAGWTSFGIIVGLLG ILTAWTVAFGTKESTNALRAKAQKNGNPLEAFKALFQNDQLLWVALSYLLYAIANVATT GVLLFLFKFVLDNQAAYSMTGVIALVSGLIMAPLYPILNKRIPRRVLYIVGMTSMIVAY ILLGLFSTNMTVVFIALVLFYIPGTLIQMTAILSLTDSIEYGQLKNGKRNEAVTLSVRP MLDKIGGALSNGITGFIAVAAGMTGNATAADMTPSNIHTFEICAFYVPLILIVLSLLVF MFKVKIDEKMHAKIVKELEAKLASGEIVDDEAQTAETVEAIDEEAKTLTE" gene 1853..4924 /locus_tag="BAD_RS08455" /old_locus_tag="BAD_1605" /db_xref="GeneID:4557038" CDS 1853..4924 /locus_tag="BAD_RS08455" /old_locus_tag="BAD_1605" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_696150.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GH2" /protein_id="WP_011743897.1" /db_xref="GeneID:4557038" /translation="MANETRIEHASETWLADSTVFEVNRVPAHSDHKCYAHDPQTNEWS DLRQSLDGEWRVEVVQASDIEFNEEPFVRENFDDSAFERIQVPGHLQMAGLMNNKYVNI QYPWDGHENPAEPNIPENNHVALYRKTFTMANRLADTKNAGGTVSIVFHGMATAIYVWV NGMFVGYGEDGFTPNEFDITEMLHDGENVVAVACYEYSSASWLEDQDFWRLHGLFRSVE LAAQPHVHIENMQIESDWDPESGSASLDAALTVRNAADAATISATLKDSDGNVVWETAN CADPDTSISTGLLNGIRPWSAEDPVLYEFEVTVIDHAGNIAEVAVQKVGFRRFRIEDGI MTINGKRIVFKGADRHEFDPKRGRAITEQDMIDDVVFCKRHNLNAIRTSHYPNQERWYE LCDEYGIYLIDETNLETHGSWCLPGDVLTEETAVPGSKAHWEGACVDRVNSMVRRDYNH PSVLIWSLGNESYTGDVFRAMYKRVHDIDPNRPVHYEGVTHNRDYNDVTDIETRMYAHA DAIEEYLKNDPQKPYISCEYMHAMGNSCGNMDEYTALERYPKYQGGFIWDFIDQAIYAT QPDGTTSLRYGGDFGDRPSDYEFSGNGLVFADRKPTPKAQEVKQLYSNVHIDVAEDSVT IKNDNLFTSTGEYTFVLRVLADGEPVWQSERRFDVPAGSTEKLDVDWPLDLYRDGASEL VLEVSQRLAKATNWAVAGYELAFGQTVVAGSKKASAPVKPVDGIVTVGRWNVGVQGSGR EVLLSRTQGGLVSYTFNNREFVLRRPAVTTFRALTDNDRGAGHGFERAQWLGAGRYARC IGNEIEQIDENTVKASYTYELATPQRTKVTVSYTADTTGRVNLHVEYPGEPGDLPTIPA FGIEWTLPVQYSNLRFFGAGPEETYQDRKHAKLGVWSTDAFKDHAPYLMPQETGNHEDV RWAEITDEKGHGLRISRAEGAEPFAMSLQPYSSFMLEEAQHQDELPAPKHMFLRVLAEQ MGVGGDDSWMSPVHPQYHIPADQPISLDVDLDLI" gene complement(5219..6238) /locus_tag="BAD_RS08460" /old_locus_tag="BAD_1606" /db_xref="GeneID:4557039" CDS complement(5219..6238) /locus_tag="BAD_RS08460" /old_locus_tag="BAD_1606" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011743898.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0044558" /protein_id="WP_011743898.1" /db_xref="GeneID:4557039" /translation="MATIREIAEKAGFSQATVSRILNDDPSFSVKEATRQKILSTSIEM GYENVPRYQRVTIPQDIALLNNSIHDKGLQDAYFDELEVSLRRHAKDERMRVTEYNDVK SLMKDASKYAGFISIGPAPFKRNMLKRLHAVLPHGVFIDINPAPSLFDSVQPDLEQTIL DALDELMDAGNKRIGFIGGFGNIMGDHEYPEDPRAFAFRNWTVRLGLDVDGLVFDEGPF TVENGRALGERFVAECGDRLPDALIVAADPIAVGVLQAFAASGILVPRDMRLVSINNQE IANYTSPTLSSYDINKDELAKAAVFMLSEAISMGRSVNQHMRISTKLVARDSFTPKAR" gene 6320..6814 /locus_tag="BAD_RS08465" /old_locus_tag="BAD_1607" /db_xref="GeneID:4557040" CDS 6320..6814 /locus_tag="BAD_RS08465" /old_locus_tag="BAD_1607" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003806587.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_ AraC,DBD-SUPERFAMILY|0036286,DBD-SUPERFAMILY|0035607" /protein_id="WP_003806587.1" /db_xref="GeneID:4557040" /translation="MSEISFSMKMDWLQCIGQSDEAIRGFKLNMLLYELLSLLYSRFVS GVRRPELVRSGRNITMQIIGYMTSHRKQHLEATDVAREFGYGREHFCRLFRKATGKTFK EFLTDLRLDDACRKLSGSSASIASIARECGFPDTRALQTAVQRKYGIRAQEYRERYENR N" ORIGIN 1 ttattcggtc agggttttgg cctcctcatc gatggcttcg acggtctcgg cggtctgagc 61 ttcgtcatcg acgatttcgc cggaggcaag cttggcttcg agctctttga caatcttagc 121 atgcatcttc tcgtcgatct tgaccttgaa catgaacacc agcaggctga gcacgatcag 181 aataagcggc acatagaagg cgcagatttc gaaggtgtgg atgttggagg gggtcatatc 241 ggccgcggtg gcgttgccgg tcatgccagc agcgacggcg atgaagccgg tgatgccgtt 301 ggacagcgcg ccgccaatct tatcaagcat cggacgtacg gacagggtga cggcctcgtt 361 gcgcttgccg ttcttcagct ggccgtattc gatggagtcg gtcagggaga ggatggcggt 421 catctggatg agggtgcccg ggatgtagaa gagcacgagg gcgatgaaca ccacggtcat 481 gttggtggag aagagaccca gcaggatgta ggccacgatc atggaggtca tgccgacgat 541 gtacaggact cggcgtggga tgcgcttgtt caggatcggg tacagcggag ccatgatgag 601 gcctgacacc aaggcgatga cgccggtcat ggagtaggcg gcctggttgt cgagcacgaa 661 cttgaacagg aagaggagta cgccggtggt ggccacgttg gcgatggcgt acagcaggta 721 ggacagggcg acccacagga gctggtcgtt ctggaacagg gccttgaatg cctcgagcgg 781 gttgccgttc ttctgggcct tggcgcgcag tgcgttggtg ctttccttgg tgccgaacgc 841 gacggtccat gcggtcagga tgccgaggag tccgacgatg atgccgaagg aggtccagcc 901 ggcctgtcct tcgcccttgg caccggtgag cgtccaagtg aagtagctga cgatcgggat 961 gaccacgacg gtgatgccgt tgtagccgat ggagccggtg aaggagccga gggcggtgta 1021 ggtggagcgc tcgtgggagt cggaggacag cgccgggatc atgccccagt aggagatgtc 1081 acgcagggag tagaacacgt cgagcacgac gaaggtgatg acgaacagca cgatgaacag 1141 cgtggtgttg acgttcacca ggccgaacat gccgctgaag atcacggcga gcaggacggc 1201 ggagatcagg ccgccgaaga actgccatgg gcggaagcgt ccccacttgg tgttggtgtt 1261 gtcgatgagg ttgcccagca gcgggtcgat gaagatctcg gcgatacgga tgatcaccac 1321 gaggctggtg atgacaccga taagcttggc cgcaagcgcc ttgtcaacgc ccgagaacag 1381 gcagccggtg acatagacga tgaaatatgt gctcatcgcg ttgtagaagg cggcctgacc 1441 gaggttgccg caggcgtagg cgatacgctg gccgagcttg cccttcttgc ggacgccacc 1501 gtccgcggtt gtcgtttcgt tgctcatttt ttcttctcct taagattccg gagttgaaga 1561 tcacccattg atcttgcatg tcgagtatac gctctttaca agaaaaagta aaaaccatta 1621 gcaaaatata gggtttggcg gcgtgttgaa ttaggtaaac cgtgtaccag cactgtcata 1681 tcggtatcaa tcagatgcct gatacgttac aacatatacc gctgatacga aggaattaag 1741 acgtcaagta aaaccgattt gctttttttg taaacaacat ttattatctg gtaaaggaag 1801 ttcatcttct ctccatcatt cacaaagatg taatgaacga aagcaggaaa acatggcaaa 1861 cgaaacccgc atcgaacacg catccgagac ctggctcgcc gattcgaccg tattcgaggt 1921 caaccgcgtc ccggcgcatt ccgaccacaa atgctacgcg cacgatccgc agaccaacga 1981 atggtccgat ctgaggcaga gcctcgacgg cgaatggagg gtcgaggtcg ttcaggcatc 2041 cgacatcgaa ttcaacgagg agcccttcgt aagggagaac ttcgacgatt ccgccttcga 2101 acgcatccag gttcccggac acctgcagat ggcgggattg atgaacaaca agtacgtgaa 2161 cattcaatac ccgtgggatg gccacgagaa tccggcggaa ccgaatattc cggagaacaa 2221 ccatgtcgcc ctctaccgta agaccttcac gatggcgaac cgtctggccg acaccaagaa 2281 cgccggcgga accgtctcca tcgtgttcca cggcatggcc accgcaatct acgtgtgggt 2341 caacggcatg ttcgtcggct atggcgagga cggcttcacc cccaacgaat tcgacatcac 2401 cgagatgctg cacgacggcg agaacgtcgt tgccgtcgca tgctacgaat actccagcgc 2461 ctcatggctc gaggaccagg acttctggcg tctgcacgga ctgttccgct cggtcgagct 2521 ggccgcgcag ccgcatgtgc atatcgagaa catgcagatc gaatccgatt gggatccgga 2581 gtccggcagc gcctctttgg acgcggcgct caccgtgcgc aacgcagccg acgcggccac 2641 gatctcggcg acgttgaagg attccgatgg taacgtcgtc tgggagaccg cgaactgcgc 2701 tgaccccgat acctccatct ccaccggatt gttgaacggc atccgcccgt ggagcgcgga 2761 ggatccggtc ctctacgagt tcgaggtcac ggtcatcgac catgccggca acatcgccga 2821 ggtcgccgtc cagaaggtcg gattccgccg cttccgcatc gaggacggca tcatgacgat 2881 taatggcaag cgcatcgtat tcaagggcgc cgaccgccac gagttcgatc ccaagcgcgg 2941 acgcgcgatc accgagcagg acatgatcga cgatgtggtc ttctgcaaga ggcacaacct 3001 caacgccatc aggacctccc actatccgaa ccaggagcgc tggtacgagc tgtgcgacga 3061 gtacggcatc tacctgatcg acgagaccaa cctcgaaacc catggcagct ggtgcctgcc 3121 cggtgacgtc ctcaccgagg agaccgccgt cccgggaagc aaggcgcatt gggagggcgc 3181 gtgcgtcgac cgtgtcaaca gcatggtgcg ccgcgactac aaccatccga gcgtcctgat 3241 ctggtctctc ggcaacgaat cctacacggg cgacgtgttc cgcgccatgt acaagcgcgt 3301 gcacgacatc gacccgaacc gtcccgtgca ctatgagggc gtgacccaca accgcgacta 3361 caacgacgtg accgacatcg agacccgcat gtatgcgcac gccgacgcca tcgaggaata 3421 cctgaagaat gatccgcaga agccttacat ctcctgcgag tacatgcacg ccatgggcaa 3481 ttcgtgcggc aacatggacg aatacaccgc gctcgaacgc tatccgaagt accagggcgg 3541 cttcatctgg gacttcatcg accaggcgat ctacgccacc cagcccgatg gaaccacgag 3601 ccttcgctat ggcggcgact tcggcgacag gccgagcgac tacgagttct ccggcaacgg 3661 cctggtgttt gcggaccgta agcccacgcc gaaggcccag gaggtcaagc agctgtattc 3721 caacgtgcat atcgatgtcg ccgaggattc cgtgaccatc aagaacgata atctgttcac 3781 ctccactggc gaatacacgt tcgtgttgcg tgtccttgcg gatggcgaac cggtatggca 3841 gtccgaacgc cgtttcgacg tgccggccgg ttcgacggag aagctcgatg tcgactggcc 3901 gttggatctg taccgcgacg gcgcgtccga actggtgctg gaggtatccc agcgtctcgc 3961 caaggcgacc aattgggcgg tagccggcta tgagctggca ttcggccaga ccgtcgtcgc 4021 cggctccaag aaggcctctg ctccggtgaa gccggtcgac ggcatcgtca ccgttggccg 4081 ttggaacgtc ggcgtgcagg gatccggccg cgaggtactg ctttcccgca cccaaggcgg 4141 actggtctcc tacacgttca acaatcgaga attcgtgctg cgccgtccgg cggtcaccac 4201 gttccgcgcg ctgaccgaca acgatcgcgg cgcaggccac ggcttcgaac gcgcccagtg 4261 gctgggagca ggccgttacg cccgctgcat cggcaacgag atcgaacaga tcgacgagaa 4321 caccgtcaag gcctcctaca cgtacgagct cgccaccccg cagcgcacca aggtgaccgt 4381 cagctacacc gccgacacca ccggacgagt gaatctgcac gtcgaatacc cgggcgagcc 4441 gggcgacctg cccaccatcc ccgcgttcgg catcgaatgg acccttccgg tccagtactc 4501 gaacctgcgt ttcttcggcg ctggtccgga ggagacctac caggatcgca agcatgccaa 4561 gctcggtgtg tggagcaccg acgcgttcaa ggaccacgcc ccgtatctca tgccgcagga 4621 aaccggcaac catgaggacg tgcgttgggc cgagatcacg gacgagaagg gccatggcct 4681 tcgcataagc cgcgccgaag gcgccgaacc gttcgcgatg agcctgcagc cgtactccag 4741 cttcatgctt gaggaagccc agcatcagga cgagctcccc gccccgaagc acatgttcct 4801 gcgtgtgctt gccgagcaga tgggtgtcgg aggagatgac tcctggatgt ccccggtcca 4861 cccccagtac catatcccgg cggaccagcc gatcagcctc gacgtcgatc tcgacctgat 4921 ctgaccggcg cgccccggcg gaaaccggga cttggctttc ctttcgccat acgcggaaac 4981 gtatggcgaa aggacggtgc cgtcgtcaag ggtggacctt gacatcaaac cggagacggc 5041 gccttgaaag ggtacggcac gtcttccatg ttttccccgt gccgtgccct cgtttccata 5101 tcgggaacag ggcttgacag actttccttc gaaaacacct cacagatgta aaagggttcg 5161 gtcctcgttg gcacgtatta agcgtgtcaa cgaggaccga accctttctt cttaaaccct 5221 acctagcttt cggggtgaaa ctgtcccggg cgaccagctt ggttgaaatc ctcatatgct 5281 ggttgacgga gcgccccatg gaaatggcct ccgacagcat gaataccgcg gccttggcca 5341 attcgtcctt gttgatgtca tacgacgaaa gcgtcggcga agtgtaattc gcgatctcct 5401 ggttgttgat gctcaccagt cgcatgtcgc gtggaaccag aatgccggac gccgcgaacg 5461 cctgcaagac gcctacggcg atggggtccg ccgccacaat cagagcatcc gggagcctgt 5521 cgccacattc ggccacgaac ctctctccca aggcacggcc gttctccacg gtgaaaggcc 5581 cctcatcgaa caccaggccg tcgacgtcaa gaccgagacg gacggtccag ttgcggaacg 5641 cgaacgcacg cggatcctcg ggatactcat ggtcgcccat gatgttgccg aaccctccga 5701 tgaacccgat tcgcttgttg ccggcgtcca tcaattcgtc caaggcgtcc agaatggtct 5761 gctccagatc cggctgcacc gaatcgaaca ggctcggcgc gggattgatg tcgatgaaca 5821 ctccatgcgg aaggaccgcg tgcagacgct tcaacatgtt ccttttgaac ggcgccggac 5881 ctattgagat gaatccggcg tatttggacg cgtccttcat cagggatttg acatcgttgt 5941 attccgtcac tctcatgcgc tcgtccttgg catggcgacg taatgaaact tcaagctcgt 6001 caaaataggc gtcctgaagc cccttgtcgt ggatggagtt gttcagcaac gcgatgtctt 6061 gcggaatggt gacacgttgg tagcggggga cgttctcgta ccccatctca atgctggtgc 6121 tcagaatctt ctgacgggtg gcctccttca ccgagaacga ggggtcgtca ttgagtattc 6181 tcgatacggt cgcctgggag aagcccgcct tttccgcgat ctccctgatc gtggccatgg 6241 aaacctacct ccttggaaat tcagcaacta aacgtgttta gtaacgagtt tatcatgttt 6301 gaaagcgtaa ttgccatcaa tgtcggaaat ttcgttttca atgaaaatgg attggctaca 6361 atgtattgga cagtccgatg aggccattcg tggattcaag ctcaatatgc tgctgtacga 6421 attgctatcg ctgctgtatt cgaggttcgt ttccggggta cggcggccgg aattggtcag 6481 atccggaaga aacatcacca tgcagatcat cggatacatg acatcgcacc gcaaacagca 6541 tctcgaagcg accgacgtcg cacgggaatt tggatacggc agggaacatt tctgccgcct 6601 attccgcaag gcgaccggca aaacgttcaa agaatttctg accgacctgc gattggacga 6661 cgcctgcaga aaactgtcag gttcctctgc gtcgatagcc agcatcgcaa gggaatgcgg 6721 tttccccgat acgcgcgcgc tgcagacggc cgtgcaacgc aaatacggca tacgcgcgca 6781 ggaatatcgc gaacgatacg aaaatcgaaa ctaa //