##gff-version 3
##sequence-region NC_004663 1 13087
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides thetaiotaomicron VPI-5482
# Note Bacteroides thetaiotaomicron VPI-5482, complete sequence.
# date 10-MAR-2020
NC_004663	GenBank	region	1	13087	.	+	1	ID=NC_004663;Dbxref=BioProject:PRJNA224116,taxon:226186;Name=NC_004663;Note=Bacteroides thetaiotaomicron VPI-5482%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from AE015928. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/10/2020 10:08:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,881 CDSs (total) :: 4,794 Genes (coding) :: 4,687 CDSs (with protein) :: 4,687 Genes (RNA) :: 87 rRNAs :: 5,5,5 (5S,16S,23S) complete rRNAs :: 5,5,5 (5S,16S,23S) tRNAs :: 70 ncRNAs :: 2 Pseudo Genes (total) :: 107 CDSs (without protein) :: 107 Pseudo Genes (ambiguous residues) :: 0 of 107 Pseudo Genes (frameshifted) :: 58 of 107 Pseudo Genes (incomplete) :: 47 of 107 Pseudo Genes (internal stop) :: 20 of 107 Pseudo Genes (multiple problems) :: 14 of 107 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AE015928. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/10/2020 10:08:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C881 CDSs (total) :: 4%2C794 Genes (coding) :: 4%2C687 CDSs (with protein) :: 4%2C687 Genes (RNA) :: 87 rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S) complete rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S) tRNAs :: 70 ncRNAs :: 2 Pseudo Genes (total) :: 107 CDSs (without protein) :: 107 Pseudo Genes (ambiguous residues) :: 0 of 107 Pseudo Genes (frameshifted) :: 58 of 107 Pseudo Genes (incomplete) :: 47 of 107 Pseudo Genes (internal stop) :: 20 of 107 Pseudo Genes (multiple problems) :: 14 of 107 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=10-MAR-2020;mol_type=genomic DNA;organism=Bacteroides thetaiotaomicron VPI-5482;strain=VPI-5482;type_material=type strain of Bacteroides thetaiotaomicron
NC_004663	GenBank	gene	1	1833	.	-	1	ID=BT_RS08915;Dbxref=GeneID:1075324;Name=BT_RS08915;old_locus_tag=BT1759,BT_1759
NC_004663	GenBank	mRNA	1	1833	.	-	1	ID=BT_RS08915.t01;Parent=BT_RS08915
NC_004663	GenBank	CDS	1	1833	.	-	1	ID=BT_RS08915.p01;Parent=BT_RS08915.t01;Dbxref=GeneID:1075324;Name=BT_RS08915;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004307086.1;old_locus_tag=BT1759,BT_1759;product=DUF4980 domain-containing protein;protein_id=WP_008767782.1;transl_table=11;translation=length.610
NC_004663	GenBank	exon	1	1833	.	-	1	Parent=BT_RS08915.t01
NC_004663	GenBank	gene	1963	3531	.	-	1	ID=BT_RS08920;Dbxref=GeneID:1075322;Name=BT_RS08920;old_locus_tag=BT1760,BT_1760
NC_004663	GenBank	mRNA	1963	3531	.	-	1	ID=BT_RS08920.t01;Parent=BT_RS08920
NC_004663	GenBank	CDS	1963	3531	.	-	1	ID=BT_RS08920.p01;Parent=BT_RS08920.t01;Dbxref=GeneID:1075322;Name=BT_RS08920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004368823.1;old_locus_tag=BT1760,BT_1760;product=DUF4975 domain-containing protein;protein_id=WP_032841481.1;transl_table=11;translation=length.522
NC_004663	GenBank	exon	1963	3531	.	-	1	Parent=BT_RS08920.t01
NC_004663	GenBank	gene	3550	4935	.	-	1	ID=BT_RS08925;Dbxref=GeneID:1075325;Name=BT_RS08925;old_locus_tag=BT1761,BT_1761
NC_004663	GenBank	mRNA	3550	4935	.	-	1	ID=BT_RS08925.t01;Parent=BT_RS08925
NC_004663	GenBank	CDS	3550	4935	.	-	1	ID=BT_RS08925.p01;Parent=BT_RS08925.t01;Dbxref=GeneID:1075325;Name=BT_RS08925;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004307089.1;old_locus_tag=BT1761,BT_1761;product=DUF4960 domain-containing protein;protein_id=WP_008763287.1;transl_table=11;translation=length.461
NC_004663	GenBank	exon	3550	4935	.	-	1	Parent=BT_RS08925.t01
NC_004663	GenBank	gene	4962	6674	.	-	1	ID=BT_RS08930;Dbxref=GeneID:1075317;Name=BT_RS08930;old_locus_tag=BT1762,BT_1762
NC_004663	GenBank	mRNA	4962	6674	.	-	1	ID=BT_RS08930.t01;Parent=BT_RS08930
NC_004663	GenBank	CDS	4962	6674	.	-	1	ID=BT_RS08930.p01;Parent=BT_RS08930.t01;Dbxref=GeneID:1075317;Name=BT_RS08930;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004307092.1;old_locus_tag=BT1762,BT_1762;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_008767780.1;transl_table=11;translation=length.570
NC_004663	GenBank	exon	4962	6674	.	-	1	Parent=BT_RS08930.t01
NC_004663	GenBank	gene	6702	9827	.	-	1	ID=BT_RS08935;Dbxref=GeneID:1075316;Name=BT_RS08935;old_locus_tag=BT1763,BT_1763
NC_004663	GenBank	mRNA	6702	9827	.	-	1	ID=BT_RS08935.t01;Parent=BT_RS08935
NC_004663	GenBank	CDS	6702	9827	.	-	1	ID=BT_RS08935.p01;Parent=BT_RS08935.t01;Dbxref=GeneID:1075316;Name=BT_RS08935;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006798920.1;old_locus_tag=BT1763,BT_1763;product=TonB-dependent receptor;protein_id=WP_011107964.1;transl_table=11;translation=length.1041
NC_004663	GenBank	exon	6702	9827	.	-	1	Parent=BT_RS08935.t01
NC_004663	GenBank	gene	10127	10999	.	+	1	ID=BT_RS08940;Dbxref=GeneID:1075318;Name=BT_RS08940;old_locus_tag=BT1764,BT_1764
NC_004663	GenBank	mRNA	10127	10999	.	+	1	ID=BT_RS08940.t01;Parent=BT_RS08940
NC_004663	GenBank	CDS	10127	10999	.	+	1	ID=BT_RS08940.p01;Parent=BT_RS08940.t01;Dbxref=GeneID:1075318;Name=BT_RS08940;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929555.1;old_locus_tag=BT1764,BT_1764;product=aldose 1-epimerase family protein;protein_id=WP_008767778.1;transl_table=11;translation=length.290
NC_004663	GenBank	exon	10127	10999	.	+	1	Parent=BT_RS08940.t01
NC_004663	GenBank	gene	11204	13087	.	-	1	ID=BT_RS08945;Dbxref=GeneID:1075310;Name=BT_RS08945;old_locus_tag=BT1765,BT_1765
NC_004663	GenBank	mRNA	11204	13087	.	-	1	ID=BT_RS08945.t01;Parent=BT_RS08945
NC_004663	GenBank	CDS	11204	13087	.	-	1	ID=BT_RS08945.p01;Parent=BT_RS08945.t01;Dbxref=GeneID:1075310;Name=BT_RS08945;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004300998.1;old_locus_tag=BT1765,BT_1765;product=DUF4980 domain-containing protein;protein_id=WP_011107965.1;transl_table=11;translation=length.627
NC_004663	GenBank	exon	11204	13087	.	-	1	Parent=BT_RS08945.t01