##gff-version 3
##sequence-region MWTN01000002 1 16506
# conversion-by bp_genbank2gff3.pl
# organism Yersinia rohdei
# Note Yersinia rohdei strain SCPM-O-B-7599 NODE_2_length_249500_cov_1.8121, whole genome shotgun sequence.
# date 14-JUN-2017
MWTN01000002	GenBank	region	1	16506	.	+	1	ID=MWTN01000002;Dbxref=BioProject:PRJNA269675,taxon:29485;Name=MWTN01000002;Note=Yersinia rohdei strain SCPM-O-B-7599 NODE_2_length_249500_cov_1.8121%2C whole genome shotgun sequence.,Bacteria and source DNA available from SRC AMB. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 20.0x Sequencing Technology :: IonTorrent ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/06/2017 10:36:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set,GeneMarkS+ Annotation Software revision :: 4.1 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 4,137 CDS (total) :: 4,070 Genes (coding) :: 3,246 CDS (coding) :: 3,246 Genes (RNA) :: 67 rRNAs :: 6,1,1 (5S,16S,23S) complete rRNAs :: 6,1,1 (5S,16S,23S) partial rRNAs :: tRNAs :: 51 ncRNAs :: 8 Pseudo Genes (total) :: 824 Pseudo Genes (ambiguous residues) :: 0 of 824 Pseudo Genes (frameshifted) :: 759 of 824 Pseudo Genes (incomplete) :: 53 of 824 Pseudo Genes (internal stop) :: 48 of 824 Pseudo Genes (multiple problems) :: 34 of 824 ##Genome-Annotation-Data-END## ;comment1=Bacteria and source DNA available from SRC AMB. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 20.0x Sequencing Technology :: IonTorrent ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/06/2017 10:36:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set%3B GeneMarkS+ Annotation Software revision :: 4.1 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 4%2C137 CDS (total) :: 4%2C070 Genes (coding) :: 3%2C246 CDS (coding) :: 3%2C246 Genes (RNA) :: 67 rRNAs :: 6%2C 1%2C 1 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 1%2C 1 (5S%2C 16S%2C 23S) partial rRNAs :: tRNAs :: 51 ncRNAs :: 8 Pseudo Genes (total) :: 824 Pseudo Genes (ambiguous residues) :: 0 of 824 Pseudo Genes (frameshifted) :: 759 of 824 Pseudo Genes (incomplete) :: 53 of 824 Pseudo Genes (internal stop) :: 48 of 824 Pseudo Genes (multiple problems) :: 34 of 824 ##Genome-Annotation-Data-END## ;date=14-JUN-2017;mol_type=genomic DNA;organism=Yersinia rohdei;strain=SCPM-O-B-7599;submitter_seqid=NODE_2_length_249500_cov_1.8121
MWTN01000002	GenBank	gene	14	1429	.	+	1	ID=B4900_01890;Name=B4900_01890
MWTN01000002	GenBank	mRNA	14	1429	.	+	1	ID=B4900_01890.t01;Parent=B4900_01890
MWTN01000002	GenBank	CDS	14	1429	.	+	1	ID=B4900_01890.p01;Parent=B4900_01890.t01;Name=B4900_01890;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013649615.1;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=OWF81712.1;transl_table=11;translation=length.471
MWTN01000002	GenBank	exon	14	1429	.	+	1	Parent=B4900_01890.t01
MWTN01000002	GenBank	pseudogenic_exon	1443	2818	.	+	1	ID=B4900_01895;Name=B4900_01895;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate%3B frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003596869.1;product=phosphomannomutase;pseudo=_no_value;transl_table=11
MWTN01000002	GenBank	pseudogene	1443	2818	.	+	1	ID=B4900_01895.pseudogene;Alias=B4900_01895;Name=B4900_01895;pseudo=_no_value
MWTN01000002	GenBank	gene	2830	3615	.	+	1	ID=B4900_01900;Name=B4900_01900
MWTN01000002	GenBank	mRNA	2830	3615	.	+	1	ID=B4900_01900.t01;Parent=B4900_01900
MWTN01000002	GenBank	CDS	2830	3615	.	+	1	ID=B4900_01900.p01;Parent=B4900_01900.t01;Name=B4900_01900;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016809196.1;product=ABC transporter;protein_id=OWF81822.1;transl_table=11;translation=length.261
MWTN01000002	GenBank	exon	2830	3615	.	+	1	Parent=B4900_01900.t01
MWTN01000002	GenBank	gene	3615	4841	.	+	1	ID=B4900_01905;Name=B4900_01905
MWTN01000002	GenBank	mRNA	3615	4841	.	+	1	ID=B4900_01905.t01;Parent=B4900_01905
MWTN01000002	GenBank	CDS	3615	4841	.	+	1	ID=B4900_01905.p01;Parent=B4900_01905.t01;Name=B4900_01905;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004713533.1;product=ABC transporter ATP-binding protein;protein_id=OWF81713.1;transl_table=11;translation=length.408
MWTN01000002	GenBank	exon	3615	4841	.	+	1	Parent=B4900_01905.t01
MWTN01000002	GenBank	gene	4900	6048	.	+	1	ID=B4900_01910;Name=B4900_01910
MWTN01000002	GenBank	mRNA	4900	6048	.	+	1	ID=B4900_01910.t01;Parent=B4900_01910
MWTN01000002	GenBank	CDS	4900	6048	.	+	1	ID=B4900_01910.p01;Parent=B4900_01910.t01;Name=B4900_01910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004711076.1;product=methyltransferase type 11;protein_id=OWF81823.1;transl_table=11;translation=length.382
MWTN01000002	GenBank	exon	4900	6048	.	+	1	Parent=B4900_01910.t01
MWTN01000002	GenBank	gene	6125	6676	.	+	1	ID=B4900_01915;Name=B4900_01915
MWTN01000002	GenBank	mRNA	6125	6676	.	+	1	ID=B4900_01915.t01;Parent=B4900_01915
MWTN01000002	GenBank	CDS	6125	6676	.	+	1	ID=B4900_01915.p01;Parent=B4900_01915.t01;Name=B4900_01915;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS+;product=hypothetical protein;protein_id=OWF81714.1;transl_table=11;translation=length.183
MWTN01000002	GenBank	exon	6125	6676	.	+	1	Parent=B4900_01915.t01
MWTN01000002	GenBank	gene	6801	7217	.	+	1	ID=B4900_01920;Name=B4900_01920
MWTN01000002	GenBank	mRNA	6801	7217	.	+	1	ID=B4900_01920.t01;Parent=B4900_01920
MWTN01000002	GenBank	CDS	6801	7217	.	+	1	ID=B4900_01920.p01;Parent=B4900_01920.t01;Name=B4900_01920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:PF13692.4;product=hypothetical protein;protein_id=OWF81715.1;transl_table=11;translation=length.138
MWTN01000002	GenBank	exon	6801	7217	.	+	1	Parent=B4900_01920.t01
MWTN01000002	GenBank	pseudogenic_exon	7700	8655	.	+	1	ID=B4900_01925;Name=B4900_01925;Note=frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019095674.1;product=hypothetical protein;pseudo=_no_value;transl_table=11
MWTN01000002	GenBank	pseudogene	7700	8655	.	+	1	ID=B4900_01925.pseudogene;Alias=B4900_01925;Name=B4900_01925;pseudo=_no_value
MWTN01000002	GenBank	gene	8652	9689	.	+	1	ID=B4900_01930;Name=B4900_01930
MWTN01000002	GenBank	mRNA	8652	9689	.	+	1	ID=B4900_01930.t01;Parent=B4900_01930
MWTN01000002	GenBank	CDS	8652	9689	.	+	1	ID=B4900_01930.p01;Parent=B4900_01930.t01;Name=B4900_01930;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019082560.1;product=GDP-mannose 4%2C6-dehydratase;protein_id=OWF81716.1;transl_table=11;translation=length.345
MWTN01000002	GenBank	exon	8652	9689	.	+	1	Parent=B4900_01930.t01
MWTN01000002	GenBank	gene	9689	10585	.	+	1	ID=B4900_01935;Name=B4900_01935
MWTN01000002	GenBank	mRNA	9689	10585	.	+	1	ID=B4900_01935.t01;Parent=B4900_01935
MWTN01000002	GenBank	CDS	9689	10585	.	+	1	ID=B4900_01935.p01;Parent=B4900_01935.t01;Name=B4900_01935;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020190512.1;product=GDP-mannose 4%2C6 dehydratase;protein_id=OWF81717.1;transl_table=11;translation=length.298
MWTN01000002	GenBank	exon	9689	10585	.	+	1	Parent=B4900_01935.t01
MWTN01000002	GenBank	pseudogenic_exon	10585	11719	.	+	1	ID=B4900_01940;Name=B4900_01940;Note=frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004713537.1;product=mannosyltransferase;pseudo=_no_value;transl_table=11
MWTN01000002	GenBank	pseudogene	10585	11719	.	+	1	ID=B4900_01940.pseudogene;Alias=B4900_01940;Name=B4900_01940;pseudo=_no_value
MWTN01000002	GenBank	gene	11724	12839	.	+	1	ID=B4900_01945;Name=B4900_01945
MWTN01000002	GenBank	mRNA	11724	12839	.	+	1	ID=B4900_01945.t01;Parent=B4900_01945
MWTN01000002	GenBank	CDS	11724	12839	.	+	1	ID=B4900_01945.p01;Parent=B4900_01945.t01;Name=B4900_01945;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004713538.1;product=glycosyl transferase family 1;protein_id=OWF81718.1;transl_table=11;translation=length.371
MWTN01000002	GenBank	exon	11724	12839	.	+	1	Parent=B4900_01945.t01
MWTN01000002	GenBank	gene	13092	13973	.	+	1	ID=B4900_01950;Name=B4900_01950
MWTN01000002	GenBank	mRNA	13092	13973	.	+	1	ID=B4900_01950.t01;Parent=B4900_01950
MWTN01000002	GenBank	CDS	13092	13973	.	+	1	ID=B4900_01950.p01;Parent=B4900_01950.t01;Name=B4900_01950;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001006968.1;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=OWF81824.1;transl_table=11;translation=length.293
MWTN01000002	GenBank	exon	13092	13973	.	+	1	Parent=B4900_01950.t01
MWTN01000002	GenBank	pseudogenic_exon	14036	14928	.	+	1	ID=B4900_01955;Name=B4900_01955;Note=frameshifted%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001006967.1;product=UTP--glucose-1-phosphate uridylyltransferase;pseudo=_no_value;transl_table=11
MWTN01000002	GenBank	pseudogene	14036	14928	.	+	1	ID=B4900_01955.pseudogene;Alias=B4900_01955;Name=B4900_01955;pseudo=_no_value
MWTN01000002	GenBank	gene	15167	16506	.	+	1	ID=B4900_01960;Name=B4900_01960
MWTN01000002	GenBank	mRNA	15167	16506	.	+	1	ID=B4900_01960.t01;Parent=B4900_01960
MWTN01000002	GenBank	CDS	15167	16506	.	+	1	ID=B4900_01960.p01;Parent=B4900_01960.t01;Name=B4900_01960;Note=catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010846854.1;product=phosphogluconate dehydrogenase (NADP(+)-dependent%2C decarboxylating);protein_id=OWF81719.1;transl_table=11;translation=length.469
MWTN01000002	GenBank	exon	15167	16506	.	+	1	Parent=B4900_01960.t01