##gff-version 3
##sequence-region ACXX02000019 1 6138
# conversion-by bp_genbank2gff3.pl
# organism Ruminiclostridium papyrosolvens DSM 2782
# Note Ruminiclostridium papyrosolvens DSM 2782 ctg47, whole genome shotgun sequence.
# date 14-MAR-2011
ACXX02000019	GenBank	region	1	6138	.	+	1	ID=ACXX02000019;Dbxref=BioProject:PRJNA33587,taxon:588581;Name=ACXX02000019;Note=Ruminiclostridium papyrosolvens DSM 2782 ctg47%2C whole genome shotgun sequence.,URL -- http://www.jgi.doe.gov JGI Project ID: 4085558 Source DNA and Organism available from Christopher L. Hemme (hemmecl@ou.edu) Contacts: Christopher L. Hemme (hemmecl@ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Clostridium papyrosolvens DSM 2782 collection_date :: Missing lat_lon :: 57.162143 -2.719417 depth :: Missing alt_elev :: Missing country :: United Kingdom environment :: Mud num_replicons :: Missing ref_biomaterial :: DSM 2782,ATCC 35413,NCIB 11394 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02584 Type Strain :: Yes Greengenes ID :: 15957 Isolation Site :: estuarine sediment,River Don,Aberdeenshire,Scotland Source of Isolate :: Christopher L. Hemme (hemmecl@ou.edu) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Noncontiguous Finished Current Finishing Status :: Noncontiguous Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454,Illumina ##Genome-Assembly-Data-END## ;comment1=URL -- http://www.jgi.doe.gov JGI Project ID: 4085558 Source DNA and Organism available from Christopher L. Hemme (hemmecl@ou.edu) Contacts: Christopher L. Hemme (hemmecl@ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Clostridium papyrosolvens DSM 2782 collection_date :: Missing lat_lon :: 57.162143 -2.719417 depth :: Missing alt_elev :: Missing country :: United Kingdom environment :: Mud num_replicons :: Missing ref_biomaterial :: DSM 2782%2C ATCC 35413%2C NCIB 11394 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02584 Type Strain :: Yes Greengenes ID :: 15957 Isolation Site :: estuarine sediment%2C River Don%2C Aberdeenshire%2C Scotland Source of Isolate :: Christopher L. Hemme (hemmecl@ou.edu) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Noncontiguous Finished Current Finishing Status :: Noncontiguous Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454%3B Illumina ##Genome-Assembly-Data-END## ;country=United Kingdom: Aberdeenshire%2C Scotland;date=14-MAR-2011;isolation_source=estuarine sediment from River Don;mol_type=genomic DNA;organism=Ruminiclostridium papyrosolvens DSM 2782;strain=DSM 2782;submitter_seqid=ctg47;type_material=type strain of Ruminiclostridium papyrosolvens
ACXX02000019	GenBank	gene	1	1698	.	+	1	ID=Cpap_0272;Name=Cpap_0272
ACXX02000019	GenBank	mRNA	1	1698	.	+	1	ID=Cpap_0272.t01;Parent=Cpap_0272
ACXX02000019	GenBank	CDS	1	1698	.	+	1	ID=Cpap_0272.p01;Parent=Cpap_0272.t01;Dbxref=GO:0016787,InterPro:IPR000805,InterPro:IPR002105,InterPro:IPR018242,InterPro:IPR018247;Name=Cpap_0272;Note=PFAM: Dockerin type 1%3B KEGG: cce:Ccel_0752 glycoside hydrolase family 26;codon_start=1;inference=protein motif:PFAM:PF00404;product=Dockerin type 1;protein_id=EGD45902.1;transl_table=11;translation=length.565
ACXX02000019	GenBank	exon	1	1698	.	+	1	Parent=Cpap_0272.t01
ACXX02000019	GenBank	gene	1734	4070	.	+	1	ID=Cpap_0273;Name=Cpap_0273
ACXX02000019	GenBank	mRNA	1734	4070	.	+	1	ID=Cpap_0273.t01;Parent=Cpap_0273
ACXX02000019	GenBank	signal_peptide	1734	1838	.	+	1	Parent=Cpap_0273;Name=Cpap_0273;Note=Signal predicted by SignalP 3.0 HMM (Signal peptide probabilty 0.958) with cleavage site probability 0.895 at residue 35
ACXX02000019	GenBank	CDS	1734	4070	.	+	1	ID=Cpap_0273.p01;Parent=Cpap_0273.t01;Dbxref=GO:0016853,GO:0030246,InterPro:IPR001701,InterPro:IPR001956,InterPro:IPR002105,InterPro:IPR018242;Name=Cpap_0273;Note=PFAM: glycoside hydrolase family 9%3B Dockerin type 1%3B KEGG: cce:Ccel_0753 glycoside hydrolase family 9;codon_start=1;inference=protein motif:PFAM:PF00759;product=glycoside hydrolase family 9;protein_id=EGD45903.1;transl_table=11;translation=length.778
ACXX02000019	GenBank	exon	1734	4070	.	+	1	Parent=Cpap_0273.t01
ACXX02000019	GenBank	gene	4114	6138	.	+	1	ID=Cpap_0274;Name=Cpap_0274
ACXX02000019	GenBank	mRNA	4114	6138	.	+	1	ID=Cpap_0274.t01;Parent=Cpap_0274
ACXX02000019	GenBank	CDS	4114	6138	.	+	1	ID=Cpap_0274.p01;Parent=Cpap_0274.t01;Dbxref=GO:0016787,InterPro:IPR001701,InterPro:IPR018221,InterPro:IPR018242,InterPro:IPR018247;Name=Cpap_0274;Note=PFAM: glycoside hydrolase family 9%3B Dockerin type 1%3B KEGG: cce:Ccel_0755 glycoside hydrolase family 9;codon_start=1;inference=protein motif:PFAM:PF00759;product=glycoside hydrolase family 9;protein_id=EGD45904.1;transl_table=11;translation=length.674
ACXX02000019	GenBank	exon	4114	6138	.	+	1	Parent=Cpap_0274.t01