##gff-version 3
##sequence-region AAXF02000051 1 65394
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides ovatus ATCC 8483
# Note Bacteroides ovatus ATCC 8483 B_ovatus-MSIQ_Cont521, whole genome shotgun sequence.
# date 04-AUG-2012
AAXF02000051	GenBank	region	1	65394	.	+	1	ID=AAXF02000051;Dbxref=BioProject:PRJNA18191,ATCC:8483,taxon:411476;Name=AAXF02000051;Note=Bacteroides ovatus ATCC 8483 B_ovatus-MSIQ_Cont521%2C whole genome shotgun sequence.,Bacteroides ovatus (GenBank Accession Number for 16S rDNA gene: X83952) is a member of the division Bacteroidetes. In one comprehensive 16S rDNA sequence-based enumeration of the colonic microbiota of three healthy adult humans,it represents,on average,0.034%25 of all 16S rDNA sequences and 0.071%25 of the sequences in its division (Eckburg et. al. (2005)). The sequenced strain was obtained from ATCC (ATCC 8483T). We have collected 6.9X coverage in plasmid end reads and 454 reads. We will be performing one round of automated sequence improvement (pre-finishing). Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally,PCAP (Huang,et al,Genome Research,13:2164,(2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive,sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine,the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions notspanned by GeneMark and Glimmer2 were blasted against NCBI'snon-redundant (NR) database and predictions generated based on proteinalignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfamv8.0. Gene names are generated at the contig level and may notnecessarily reflect any known order or orientation betweencontigs. For answers to your questions regarding this assembly or project,or any other GSC genome project,please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in August 2007,and the CDS comments were updated in January 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Product names were updated in August 2012. ;comment1=Bacteroides ovatus (GenBank Accession Number for 16S rDNA gene: X83952) is a member of the division Bacteroidetes. In one comprehensive 16S rDNA sequence-based enumeration of the colonic microbiota of three healthy adult humans%2C it represents%2C on average%2C 0.034%25 of all 16S rDNA sequences and 0.071%25 of the sequences in its division (Eckburg et. al. (2005)). The sequenced strain was obtained from ATCC (ATCC 8483T). We have collected 6.9X coverage in plasmid end reads and 454 reads. We will be performing one round of automated sequence improvement (pre-finishing). Sequencing/Assembly: The genomic DNA was purified from liquid culture derived from a single bacterial colony. A hybrid sequencing strategy that utilized reads from both 454 GS-20 and ABI 3730xl sequencers was devised and implemented to generate the draft genome sequences. 454 reads were assembled using Newbler (454 Life Sciences) into 454 de novo contigs. These de novo contigs were converted in silico to 800 base paired reads ('superreads') with 400 base overlaps with neighboring superreads. Finally%2C PCAP (Huang%2C et al%2C Genome Research%2C 13:2164%2C (2003)) was used to assemble the super-reads and the conventional 3730xl capillary reads. This sequenced strain is part of a comprehensive%2C sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine%2C the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS eq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions notspanned by GeneMark and Glimmer2 were blasted against NCBI'snon-redundant (NR) database and predictions generated based on proteinalignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfamv8.0. Gene names are generated at the contig level and may notnecessarily reflect any known order or orientation betweencontigs. For answers to your questions regarding this assembly or project%2C or any other GSC genome project%2C please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in August 2007%2C and the CDS comments were updated in January 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Product names were updated in August 2012. ;date=04-AUG-2012;mol_type=genomic DNA;organism=Bacteroides ovatus ATCC 8483;strain=ATCC 8483;type_material=type strain of Bacteroides ovatus
AAXF02000051	GenBank	gene	1	26	.	-	1	ID=BACOVA_03418;Name=BACOVA_03418
AAXF02000051	GenBank	mRNA	1	26	.	-	1	ID=BACOVA_03418.t01;Parent=BACOVA_03418
AAXF02000051	GenBank	CDS	1	26	.	-	1	ID=BACOVA_03418.p01;Parent=BACOVA_03418.t01;Name=BACOVA_03418;codon_start=1;product=hypothetical protein;protein_id=EDO10785.1;transl_table=11;translation=length.37
AAXF02000051	GenBank	exon	1	26	.	-	1	Parent=BACOVA_03418.t01
AAXF02000051	GenBank	gene	1	1605	.	+	1	ID=BACOVA_03417;Name=BACOVA_03417
AAXF02000051	GenBank	mRNA	1	1605	.	+	1	ID=BACOVA_03417.t01;Parent=BACOVA_03417
AAXF02000051	GenBank	CDS	1	1605	.	+	1	ID=BACOVA_03417.p01;Parent=BACOVA_03417.t01;Dbxref=InterPro:IPR006710;Name=BACOVA_03417;Note=KEGG: chu:CHU_2041 7.4e-95 CHU large protein%3B candidate polyfunctional acetylxylan esterase/b-xylosidase/A-L-arabinofuranosidase%2C CBM9 module%2C glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238%3B COG: COG3507 Beta-xylosidase;codon_start=1;inference=protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR006710,similar to AA sequence:REFSEQ:YP_001196205.1;product=glycosyl hydrolase%2C family 43;protein_id=EDO10784.1;transl_table=11;translation=length.534
AAXF02000051	GenBank	exon	1	1605	.	+	1	Parent=BACOVA_03417.t01
AAXF02000051	GenBank	gene	1702	4287	.	+	1	ID=BACOVA_03419;Name=BACOVA_03419
AAXF02000051	GenBank	mRNA	1702	4287	.	+	1	ID=BACOVA_03419.t01;Parent=BACOVA_03419
AAXF02000051	GenBank	CDS	1702	4287	.	+	1	ID=BACOVA_03419.p01;Parent=BACOVA_03419.t01;Dbxref=InterPro:IPR001764,InterPro:IPR002772,InterPro:IPR011658,InterPro:IPR013145;Name=BACOVA_03419;Note=KEGG: xcv:XCV4337 4.6e-182 beta-glucosidase precursor K01188%3B COG: COG1472 Beta-glucosidase-related glycosidases%3B Psort location: Periplasmic%2C score:9.44;codon_start=1;inference=protein motif:HMMPfam:IPR001764,protein motif:HMMPfam:IPR002772,protein motif:HMMPfam:IPR011658,protein motif:HMMSmart:IPR013145,protein motif:ScanRegExp:IPR001764,similar to AA sequence:REFSEQ:NP_811921.1;product=glycosyl hydrolase family 3 C-terminal domain protein;protein_id=EDO10786.1;transl_table=11;translation=length.861
AAXF02000051	GenBank	exon	1702	4287	.	+	1	Parent=BACOVA_03419.t01
AAXF02000051	GenBank	gene	4488	4649	.	+	1	ID=BACOVA_03420;Name=BACOVA_03420
AAXF02000051	GenBank	mRNA	4488	4649	.	+	1	ID=BACOVA_03420.t01;Parent=BACOVA_03420
AAXF02000051	GenBank	CDS	4488	4649	.	+	1	ID=BACOVA_03420.p01;Parent=BACOVA_03420.t01;Name=BACOVA_03420;Note=Psort location: Cytoplasmic%2C score:8.96;codon_start=1;product=hypothetical protein;protein_id=EDO10787.1;transl_table=11;translation=length.53
AAXF02000051	GenBank	exon	4488	4649	.	+	1	Parent=BACOVA_03420.t01
AAXF02000051	GenBank	gene	4720	6447	.	+	1	ID=BACOVA_03421;Name=BACOVA_03421
AAXF02000051	GenBank	mRNA	4720	6447	.	+	1	ID=BACOVA_03421.t01;Parent=BACOVA_03421
AAXF02000051	GenBank	CDS	4720	6447	.	+	1	ID=BACOVA_03421.p01;Parent=BACOVA_03421.t01;Dbxref=InterPro:IPR006710;Name=BACOVA_03421;Note=KEGG: sde:Sde_1655 7.6e-118 translation initiation factor IF-1 K01209%3B COG: COG3507 Beta-xylosidase;codon_start=1;inference=protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR006710,similar to AA sequence:REFSEQ:YP_001196210.1;product=glycosyl hydrolase%2C family 43;protein_id=EDO10788.1;transl_table=11;translation=length.575
AAXF02000051	GenBank	exon	4720	6447	.	+	1	Parent=BACOVA_03421.t01
AAXF02000051	GenBank	gene	6473	8917	.	+	1	ID=BACOVA_03422;Name=BACOVA_03422
AAXF02000051	GenBank	mRNA	6473	8917	.	+	1	ID=BACOVA_03422.t01;Parent=BACOVA_03422
AAXF02000051	GenBank	CDS	6473	8917	.	+	1	ID=BACOVA_03422.p01;Parent=BACOVA_03422.t01;Dbxref=InterPro:IPR000322;eC_number=3.2.1.-;Name=BACOVA_03422;Note=KEGG: aba:Acid345_0898 1.2e-149 alpha-glucosidase K01187%3B COG: COG1501 Alpha-glucosidases%2C family 31 of glycosyl hydrolases;codon_start=1;inference=protein motif:HMMPfam:IPR000322,similar to AA sequence:INSD:AAO78764.1;product=glycosyl hydrolase%2C family 31;protein_id=EDO10789.1;transl_table=11;translation=length.814
AAXF02000051	GenBank	exon	6473	8917	.	+	1	Parent=BACOVA_03422.t01
AAXF02000051	GenBank	gene	8914	10914	.	+	1	ID=BACOVA_03423;Name=BACOVA_03423
AAXF02000051	GenBank	mRNA	8914	10914	.	+	1	ID=BACOVA_03423.t01;Parent=BACOVA_03423
AAXF02000051	GenBank	CDS	8914	10914	.	+	1	ID=BACOVA_03423.p01;Parent=BACOVA_03423.t01;Name=BACOVA_03423;Note=KEGG: xcv:XCV3431 2.8e-49 putative secreted protein K01187%3B COG: NOG26813 non supervised orthologous group;codon_start=1;inference=similar to AA sequence:REFSEQ:YP_001196203.1;product=hypothetical protein;protein_id=EDO10790.1;transl_table=11;translation=length.666
AAXF02000051	GenBank	exon	8914	10914	.	+	1	Parent=BACOVA_03423.t01
AAXF02000051	GenBank	gene	10934	12265	.	+	1	ID=BACOVA_03424;Name=BACOVA_03424
AAXF02000051	GenBank	mRNA	10934	12265	.	+	1	ID=BACOVA_03424.t01;Parent=BACOVA_03424
AAXF02000051	GenBank	CDS	10934	12265	.	+	1	ID=BACOVA_03424.p01;Parent=BACOVA_03424.t01;Dbxref=InterPro:IPR005084,InterPro:IPR006584,InterPro:IPR006710,InterPro:IPR008979;Name=BACOVA_03424;Note=KEGG: pat:Patl_3728 1.8e-29 alpha-L-arabinofuranosidase K01209%3B COG: COG5498 Predicted glycosyl hydrolase;codon_start=1;inference=protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR005084,protein motif:HMMPfam:IPR006710,protein motif:HMMSmart:IPR006584,protein motif:superfamily:IPR008979,similar to AA sequence:REFSEQ:ZP_01418580.1;product=glycosyl hydrolase%2C family 43;protein_id=EDO10791.1;transl_table=11;translation=length.443
AAXF02000051	GenBank	exon	10934	12265	.	+	1	Parent=BACOVA_03424.t01
AAXF02000051	GenBank	gene	12413	14215	.	+	1	ID=BACOVA_03425;Name=BACOVA_03425
AAXF02000051	GenBank	mRNA	12413	14215	.	+	1	ID=BACOVA_03425.t01;Parent=BACOVA_03425
AAXF02000051	GenBank	CDS	12413	14215	.	+	1	ID=BACOVA_03425.p01;Parent=BACOVA_03425.t01;Dbxref=InterPro:IPR006710;Name=BACOVA_03425;Note=KEGG: sde:Sde_1655 1.4e-125 translation initiation factor IF-1 K01209%3B COG: COG3507 Beta-xylosidase;codon_start=1;inference=protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR006710,similar to AA sequence:REFSEQ:YP_527127.1;product=glycosyl hydrolase%2C family 43;protein_id=EDO10792.1;transl_table=11;translation=length.600
AAXF02000051	GenBank	exon	12413	14215	.	+	1	Parent=BACOVA_03425.t01
AAXF02000051	GenBank	gene	14336	17488	.	+	1	ID=BACOVA_03426;Name=BACOVA_03426
AAXF02000051	GenBank	mRNA	14336	17488	.	+	1	ID=BACOVA_03426.t01;Parent=BACOVA_03426
AAXF02000051	GenBank	CDS	14336	17488	.	+	1	ID=BACOVA_03426.p01;Parent=BACOVA_03426.t01;Dbxref=InterPro:IPR000531,InterPro:IPR008969,InterPro:IPR012910;Name=BACOVA_03426;codon_start=1;inference=protein motif:HMMPfam:IPR000531,protein motif:HMMPfam:IPR012910,protein motif:superfamily:IPR008969,similar to AA sequence:INSD:AAO75471.1;product=TonB-linked outer membrane protein%2C SusC/RagA family;protein_id=EDO10793.1;transl_table=11;translation=length.1050
AAXF02000051	GenBank	exon	14336	17488	.	+	1	Parent=BACOVA_03426.t01
AAXF02000051	GenBank	gene	17505	19376	.	+	1	ID=BACOVA_03427;Name=BACOVA_03427
AAXF02000051	GenBank	mRNA	17505	19376	.	+	1	ID=BACOVA_03427.t01;Parent=BACOVA_03427
AAXF02000051	GenBank	CDS	17505	19376	.	+	1	ID=BACOVA_03427.p01;Parent=BACOVA_03427.t01;Dbxref=InterPro:IPR012944;Name=BACOVA_03427;codon_start=1;inference=protein motif:HMMPfam:IPR012944,similar to AA sequence:REFSEQ:YP_098227.1;product=SusD family protein;protein_id=EDO10794.1;transl_table=11;translation=length.623
AAXF02000051	GenBank	exon	17505	19376	.	+	1	Parent=BACOVA_03427.t01
AAXF02000051	GenBank	gene	19409	22228	.	+	1	ID=BACOVA_03428;Name=BACOVA_03428
AAXF02000051	GenBank	mRNA	19409	22228	.	+	1	ID=BACOVA_03428.t01;Parent=BACOVA_03428
AAXF02000051	GenBank	CDS	19409	22228	.	+	1	ID=BACOVA_03428.p01;Parent=BACOVA_03428.t01;Dbxref=InterPro:IPR000531,InterPro:IPR012910;Name=BACOVA_03428;Note=COG: NOG26114 non supervised orthologous group%3B Psort location: OuterMembrane%2C score:9.52;codon_start=1;inference=protein motif:HMMPfam:IPR000531,protein motif:HMMPfam:IPR012910,similar to AA sequence:INSD:AAO77214.1;product=TonB-linked outer membrane protein%2C SusC/RagA family;protein_id=EDO10795.1;transl_table=11;translation=length.939
AAXF02000051	GenBank	exon	19409	22228	.	+	1	Parent=BACOVA_03428.t01
AAXF02000051	GenBank	gene	22256	24031	.	+	1	ID=BACOVA_03429;Name=BACOVA_03429
AAXF02000051	GenBank	mRNA	22256	24031	.	+	1	ID=BACOVA_03429.t01;Parent=BACOVA_03429
AAXF02000051	GenBank	CDS	22256	24031	.	+	1	ID=BACOVA_03429.p01;Parent=BACOVA_03429.t01;Dbxref=InterPro:IPR012944;Name=BACOVA_03429;codon_start=1;inference=protein motif:HMMPfam:IPR012944,similar to AA sequence:INSD:AAO79194.1;product=SusD family protein;protein_id=EDO10796.1;transl_table=11;translation=length.591
AAXF02000051	GenBank	exon	22256	24031	.	+	1	Parent=BACOVA_03429.t01
AAXF02000051	GenBank	gene	24063	25097	.	+	1	ID=BACOVA_03430;Name=BACOVA_03430
AAXF02000051	GenBank	mRNA	24063	25097	.	+	1	ID=BACOVA_03430.t01;Parent=BACOVA_03430
AAXF02000051	GenBank	CDS	24063	25097	.	+	1	ID=BACOVA_03430.p01;Parent=BACOVA_03430.t01;Name=BACOVA_03430;codon_start=1;product=hypothetical protein;protein_id=EDO10797.1;transl_table=11;translation=length.344
AAXF02000051	GenBank	exon	24063	25097	.	+	1	Parent=BACOVA_03430.t01
AAXF02000051	GenBank	gene	25130	27382	.	+	1	ID=BACOVA_03431;Name=BACOVA_03431
AAXF02000051	GenBank	mRNA	25130	27382	.	+	1	ID=BACOVA_03431.t01;Parent=BACOVA_03431
AAXF02000051	GenBank	CDS	25130	27382	.	+	1	ID=BACOVA_03431.p01;Parent=BACOVA_03431.t01;Dbxref=InterPro:IPR013781;Name=BACOVA_03431;codon_start=1;inference=protein motif:Gene3D:IPR013781,similar to AA sequence:INSD:AAB81559.1;product=hypothetical protein;protein_id=EDO10798.1;transl_table=11;translation=length.750
AAXF02000051	GenBank	exon	25130	27382	.	+	1	Parent=BACOVA_03431.t01
AAXF02000051	GenBank	gene	27416	29059	.	+	1	ID=BACOVA_03432;Name=BACOVA_03432
AAXF02000051	GenBank	mRNA	27416	29059	.	+	1	ID=BACOVA_03432.t01;Parent=BACOVA_03432
AAXF02000051	GenBank	CDS	27416	29059	.	+	1	ID=BACOVA_03432.p01;Parent=BACOVA_03432.t01;Dbxref=InterPro:IPR001139,InterPro:IPR013055;Name=BACOVA_03432;Note=KEGG: chu:CHU_2042 1.5e-47 CHU large protein%2C candidate xylanase%2C CBM9 module%2C glycoside hydrolase family 5 protein K01238%3B COG: COG5520 O-Glycosyl hydrolase;codon_start=1;inference=protein motif:HMMPanther:IPR001139,protein motif:ScanRegExp:IPR013055,similar to AA sequence:PDB:1NOF;product=hypothetical protein;protein_id=EDO10799.1;transl_table=11;translation=length.547
AAXF02000051	GenBank	exon	27416	29059	.	+	1	Parent=BACOVA_03432.t01
AAXF02000051	GenBank	gene	29059	31902	.	+	1	ID=BACOVA_03433;Name=BACOVA_03433
AAXF02000051	GenBank	mRNA	29059	31902	.	+	1	ID=BACOVA_03433.t01;Parent=BACOVA_03433
AAXF02000051	GenBank	CDS	29059	31902	.	+	1	ID=BACOVA_03433.p01;Parent=BACOVA_03433.t01;Dbxref=InterPro:IPR008979,InterPro:IPR013190,InterPro:IPR013191;Name=BACOVA_03433;Note=COG: NOG10966 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR013190,protein motif:HMMPfam:IPR013191,protein motif:superfamily:IPR008979,similar to AA sequence:REFSEQ:YP_972610.1;product=glycosyl hydrolase family 98 C-terminal domain protein;protein_id=EDO10800.1;transl_table=11;translation=length.947
AAXF02000051	GenBank	exon	29059	31902	.	+	1	Parent=BACOVA_03433.t01
AAXF02000051	GenBank	gene	31988	34531	.	+	1	ID=BACOVA_03434;Name=BACOVA_03434
AAXF02000051	GenBank	mRNA	31988	34531	.	+	1	ID=BACOVA_03434.t01;Parent=BACOVA_03434
AAXF02000051	GenBank	CDS	31988	34531	.	+	1	ID=BACOVA_03434.p01;Parent=BACOVA_03434.t01;Name=BACOVA_03434;Note=COG: NOG06097 non supervised orthologous group;codon_start=1;inference=similar to AA sequence:REFSEQ:YP_001196207.1;product=hypothetical protein;protein_id=EDO10801.1;transl_table=11;translation=length.847
AAXF02000051	GenBank	exon	31988	34531	.	+	1	Parent=BACOVA_03434.t01
AAXF02000051	GenBank	gene	34558	36474	.	+	1	ID=BACOVA_03435;Name=BACOVA_03435
AAXF02000051	GenBank	mRNA	34558	36474	.	+	1	ID=BACOVA_03435.t01;Parent=BACOVA_03435
AAXF02000051	GenBank	CDS	34558	36474	.	+	1	ID=BACOVA_03435.p01;Parent=BACOVA_03435.t01;Dbxref=InterPro:IPR000801,InterPro:IPR005181,InterPro:IPR013783,InterPro:IPR013830;Name=BACOVA_03435;Note=KEGG: chu:CHU_1239 1.2e-76 CHU large protein%3B candidate bifunctional acetylxylan esterase/xylanase%2C CBM4 module%2C glycoside hydrolase family 10 protein and carbohydrate esterase family 6 protein%3B COG: COG2382 Enterochelin esterase and related enzymes;codon_start=1;inference=protein motif:Gene3D:IPR013783,protein motif:HMMPfam:IPR000801,protein motif:HMMPfam:IPR005181,protein motif:superfamily:IPR013830,similar to AA sequence:INSD:CAJ19109.1;product=hypothetical protein;protein_id=EDO10802.1;transl_table=11;translation=length.638
AAXF02000051	GenBank	exon	34558	36474	.	+	1	Parent=BACOVA_03435.t01
AAXF02000051	GenBank	gene	36482	37870	.	+	1	ID=BACOVA_03436;Name=BACOVA_03436
AAXF02000051	GenBank	mRNA	36482	37870	.	+	1	ID=BACOVA_03436.t01;Parent=BACOVA_03436
AAXF02000051	GenBank	CDS	36482	37870	.	+	1	ID=BACOVA_03436.p01;Parent=BACOVA_03436.t01;Dbxref=InterPro:IPR005084,InterPro:IPR006584,InterPro:IPR006710,InterPro:IPR008979;Name=BACOVA_03436;Note=KEGG: sde:Sde_0822 1.2e-41 alpha-L-arabinofuranosidase K01209%3B COG: COG5498 Predicted glycosyl hydrolase;codon_start=1;inference=protein motif:HMMPanther:IPR006710,protein motif:HMMPfam:IPR005084,protein motif:HMMPfam:IPR006710,protein motif:HMMSmart:IPR006584,protein motif:superfamily:IPR008979,similar to AA sequence:REFSEQ:YP_001038591.1;product=glycosyl hydrolase%2C family 43;protein_id=EDO10803.1;transl_table=11;translation=length.462
AAXF02000051	GenBank	exon	36482	37870	.	+	1	Parent=BACOVA_03436.t01
AAXF02000051	GenBank	gene	37892	41911	.	-	1	ID=BACOVA_03437;Name=BACOVA_03437
AAXF02000051	GenBank	mRNA	37892	41911	.	-	1	ID=BACOVA_03437.t01;Parent=BACOVA_03437
AAXF02000051	GenBank	CDS	37892	41911	.	-	1	ID=BACOVA_03437.p01;Parent=BACOVA_03437.t01;Dbxref=InterPro:IPR000005,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR008957,InterPro:IPR009057,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR011123,InterPro:IPR012287;Name=BACOVA_03437;Note=KEGG: ana:all4963 5.5e-55 cyaC%3B adenylate cyclase carring two-component hybrid sensor and regulator domains%3B COG: COG0642 Signal transduction histidine kinase%3B Psort location: CytoplasmicMembrane%2C score:10.00;codon_start=1;inference=protein motif:BlastProDom:IPR001789,protein motif:Gene3D:IPR003594,protein motif:Gene3D:IPR012287,protein motif:HMMPfam:IPR000005,protein motif:HMMPfam:IPR001789,protein motif:HMMPfam:IPR003594,protein motif:HMMPfam:IPR003661,protein motif:HMMPfam:IPR011123,protein motif:HMMSmart:IPR000005,protein motif:HMMSmart:IPR001789,protein motif:HMMSmart:IPR003594,protein motif:HMMSmart:IPR003661,protein motif:ScanRegExp:IPR000005,protein motif:superfamily:IPR003594,protein motif:superfamily:IPR008957,protein motif:superfamily:IPR009057,protein motif:superfamily:IPR009082,protein motif:superfamily:IPR011006,similar to AA sequence:REFSEQ:NP_813574.1;product=response regulator receiver domain protein;protein_id=EDO10804.1;transl_table=11;translation=length.1339
AAXF02000051	GenBank	exon	37892	41911	.	-	1	Parent=BACOVA_03437.t01
AAXF02000051	GenBank	gene	42070	44505	.	-	1	ID=BACOVA_03438;Name=BACOVA_03438
AAXF02000051	GenBank	mRNA	42070	44505	.	-	1	ID=BACOVA_03438.t01;Parent=BACOVA_03438
AAXF02000051	GenBank	CDS	42070	44505	.	-	1	ID=BACOVA_03438.p01;Parent=BACOVA_03438.t01;Dbxref=InterPro:IPR008928;Name=BACOVA_03438;Note=COG: NOG04001 non supervised orthologous group;codon_start=1;inference=protein motif:superfamily:IPR008928,similar to AA sequence:REFSEQ:YP_001196410.1;product=hypothetical protein;protein_id=EDO10805.1;transl_table=11;translation=length.811
AAXF02000051	GenBank	exon	42070	44505	.	-	1	Parent=BACOVA_03438.t01
AAXF02000051	GenBank	gene	44502	44672	.	-	1	ID=BACOVA_03439;Name=BACOVA_03439
AAXF02000051	GenBank	mRNA	44502	44672	.	-	1	ID=BACOVA_03439.t01;Parent=BACOVA_03439
AAXF02000051	GenBank	CDS	44502	44672	.	-	1	ID=BACOVA_03439.p01;Parent=BACOVA_03439.t01;Name=BACOVA_03439;codon_start=1;product=hypothetical protein;protein_id=EDO10806.1;transl_table=11;translation=length.56
AAXF02000051	GenBank	exon	44502	44672	.	-	1	Parent=BACOVA_03439.t01
AAXF02000051	GenBank	gene	44716	45183	.	-	1	ID=BACOVA_03440;Name=BACOVA_03440
AAXF02000051	GenBank	mRNA	44716	45183	.	-	1	ID=BACOVA_03440.t01;Parent=BACOVA_03440
AAXF02000051	GenBank	CDS	44716	45183	.	-	1	ID=BACOVA_03440.p01;Parent=BACOVA_03440.t01;Name=BACOVA_03440;codon_start=1;product=hypothetical protein;protein_id=EDO10807.1;transl_table=11;translation=length.155
AAXF02000051	GenBank	exon	44716	45183	.	-	1	Parent=BACOVA_03440.t01
AAXF02000051	GenBank	gene	45402	49367	.	+	1	ID=BACOVA_03441;Name=BACOVA_03441
AAXF02000051	GenBank	mRNA	45402	49367	.	+	1	ID=BACOVA_03441.t01;Parent=BACOVA_03441
AAXF02000051	GenBank	CDS	45402	49367	.	+	1	ID=BACOVA_03441.p01;Parent=BACOVA_03441.t01;Dbxref=InterPro:IPR000005,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR005829,InterPro:IPR009057,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR011041,InterPro:IPR011110,InterPro:IPR011123,InterPro:IPR012287;Name=BACOVA_03441;Note=KEGG: ava:Ava_2239 5.6e-51 adenylate/guanylate cyclase K01768%3B COG: COG0642 Signal transduction histidine kinase%3B Psort location: CytoplasmicMembrane%2C score:9.98;codon_start=1;inference=protein motif:BlastProDom:IPR001789,protein motif:Gene3D:IPR003594,protein motif:Gene3D:IPR012287,protein motif:HMMPfam:IPR000005,protein motif:HMMPfam:IPR001789,protein motif:HMMPfam:IPR003594,protein motif:HMMPfam:IPR003661,protein motif:HMMPfam:IPR011110,protein motif:HMMPfam:IPR011123,protein motif:HMMSmart:IPR000005,protein motif:HMMSmart:IPR001789,protein motif:HMMSmart:IPR003594,protein motif:HMMSmart:IPR003661,protein motif:ScanRegExp:IPR000005,protein motif:ScanRegExp:IPR005829,protein motif:superfamily:IPR003594,protein motif:superfamily:IPR009057,protein motif:superfamily:IPR009082,protein motif:superfamily:IPR011006,protein motif:superfamily:IPR011041,similar to AA sequence:INSD:CAD21009.1;product=response regulator receiver domain protein;protein_id=EDO10808.1;transl_table=11;translation=length.1321
AAXF02000051	GenBank	exon	45402	49367	.	+	1	Parent=BACOVA_03441.t01
AAXF02000051	GenBank	gene	49547	51058	.	+	1	ID=BACOVA_03442;Name=BACOVA_03442
AAXF02000051	GenBank	mRNA	49547	51058	.	+	1	ID=BACOVA_03442.t01;Parent=BACOVA_03442
AAXF02000051	GenBank	CDS	49547	51058	.	+	1	ID=BACOVA_03442.p01;Parent=BACOVA_03442.t01;Dbxref=InterPro:IPR001139;Name=BACOVA_03442;Note=KEGG: aba:Acid345_4153 0.00020 glucosylceramidase K01201%3B Psort location: OuterMembrane%2C score:9.52;codon_start=1;inference=protein motif:HMMPanther:IPR001139,protein motif:HMMPfam:IPR001139;product=hypothetical protein;protein_id=EDO10809.1;transl_table=11;translation=length.503
AAXF02000051	GenBank	exon	49547	51058	.	+	1	Parent=BACOVA_03442.t01
AAXF02000051	GenBank	gene	51263	54484	.	+	1	ID=BACOVA_03443;Name=BACOVA_03443
AAXF02000051	GenBank	mRNA	51263	54484	.	+	1	ID=BACOVA_03443.t01;Parent=BACOVA_03443
AAXF02000051	GenBank	CDS	51263	54484	.	+	1	ID=BACOVA_03443.p01;Parent=BACOVA_03443.t01;Dbxref=InterPro:IPR000531,InterPro:IPR008969,InterPro:IPR012910;Name=BACOVA_03443;Note=COG: NOG06407 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR000531,protein motif:HMMPfam:IPR012910,protein motif:superfamily:IPR008969,similar to AA sequence:INSD:ABQ06874.1;product=TonB-linked outer membrane protein%2C SusC/RagA family;protein_id=EDO10810.1;transl_table=11;translation=length.1073
AAXF02000051	GenBank	exon	51263	54484	.	+	1	Parent=BACOVA_03443.t01
AAXF02000051	GenBank	gene	54498	56354	.	+	1	ID=BACOVA_03444;Name=BACOVA_03444
AAXF02000051	GenBank	mRNA	54498	56354	.	+	1	ID=BACOVA_03444.t01;Parent=BACOVA_03444
AAXF02000051	GenBank	CDS	54498	56354	.	+	1	ID=BACOVA_03444.p01;Parent=BACOVA_03444.t01;Dbxref=InterPro:IPR012944;Name=BACOVA_03444;Note=COG: NOG28394 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR012944,similar to AA sequence:INSD:ABQ06875.1;product=SusD family protein;protein_id=EDO10811.1;transl_table=11;translation=length.618
AAXF02000051	GenBank	exon	54498	56354	.	+	1	Parent=BACOVA_03444.t01
AAXF02000051	GenBank	gene	56338	57720	.	+	1	ID=BACOVA_03445;Name=BACOVA_03445
AAXF02000051	GenBank	mRNA	56338	57720	.	+	1	ID=BACOVA_03445.t01;Parent=BACOVA_03445
AAXF02000051	GenBank	CDS	56338	57720	.	+	1	ID=BACOVA_03445.p01;Parent=BACOVA_03445.t01;Dbxref=InterPro:IPR002909;Name=BACOVA_03445;codon_start=1;inference=protein motif:HMMPfam:IPR002909;product=IPT/TIG domain protein;protein_id=EDO10812.1;transl_table=11;translation=length.460
AAXF02000051	GenBank	exon	56338	57720	.	+	1	Parent=BACOVA_03445.t01
AAXF02000051	GenBank	gene	57746	59749	.	+	1	ID=BACOVA_03446;Name=BACOVA_03446
AAXF02000051	GenBank	mRNA	57746	59749	.	+	1	ID=BACOVA_03446.t01;Parent=BACOVA_03446
AAXF02000051	GenBank	CDS	57746	59749	.	+	1	ID=BACOVA_03446.p01;Parent=BACOVA_03446.t01;Name=BACOVA_03446;codon_start=1;product=hypothetical protein;protein_id=EDO10813.1;transl_table=11;translation=length.667
AAXF02000051	GenBank	exon	57746	59749	.	+	1	Parent=BACOVA_03446.t01
AAXF02000051	GenBank	gene	59771	60190	.	+	1	ID=BACOVA_03447;Name=BACOVA_03447
AAXF02000051	GenBank	mRNA	59771	60190	.	+	1	ID=BACOVA_03447.t01;Parent=BACOVA_03447
AAXF02000051	GenBank	CDS	59771	60190	.	+	1	ID=BACOVA_03447.p01;Parent=BACOVA_03447.t01;Name=BACOVA_03447;codon_start=1;product=hypothetical protein;protein_id=EDO10814.1;transl_table=11;translation=length.139
AAXF02000051	GenBank	exon	59771	60190	.	+	1	Parent=BACOVA_03447.t01
AAXF02000051	GenBank	gene	60552	60677	.	-	1	ID=BACOVA_03448;Name=BACOVA_03448
AAXF02000051	GenBank	mRNA	60552	60677	.	-	1	ID=BACOVA_03448.t01;Parent=BACOVA_03448
AAXF02000051	GenBank	CDS	60552	60677	.	-	1	ID=BACOVA_03448.p01;Parent=BACOVA_03448.t01;Name=BACOVA_03448;codon_start=1;product=hypothetical protein;protein_id=EDO10815.1;transl_table=11;translation=length.41
AAXF02000051	GenBank	exon	60552	60677	.	-	1	Parent=BACOVA_03448.t01
AAXF02000051	GenBank	gene	60862	63432	.	-	1	ID=BACOVA_03449;Name=BACOVA_03449
AAXF02000051	GenBank	mRNA	60862	63432	.	-	1	ID=BACOVA_03449.t01;Parent=BACOVA_03449
AAXF02000051	GenBank	CDS	60862	63432	.	-	1	ID=BACOVA_03449.p01;Parent=BACOVA_03449.t01;Name=BACOVA_03449;Note=COG: NOG06097 non supervised orthologous group;codon_start=1;inference=similar to AA sequence:REFSEQ:YP_001196207.1;product=hypothetical protein;protein_id=EDO10816.1;transl_table=11;translation=length.856
AAXF02000051	GenBank	exon	60862	63432	.	-	1	Parent=BACOVA_03449.t01
AAXF02000051	GenBank	gene	63463	65394	.	-	1	ID=BACOVA_03450;Name=BACOVA_03450
AAXF02000051	GenBank	mRNA	63463	65394	.	-	1	ID=BACOVA_03450.t01;Parent=BACOVA_03450
AAXF02000051	GenBank	CDS	63463	65394	.	-	1	ID=BACOVA_03450.p01;Parent=BACOVA_03450.t01;Dbxref=InterPro:IPR005181,InterPro:IPR006104,InterPro:IPR008979;Name=BACOVA_03450;Note=KEGG: xcv:XCV1803 1.4e-93 putative sialate O-acetylesterase%3B COG: NOG04984 non supervised orthologous group;codon_start=1;inference=protein motif:HMMPfam:IPR005181,protein motif:HMMPfam:IPR006104,protein motif:superfamily:IPR008979,similar to AA sequence:INSD:ABP65854.1;product=glycosyl hydrolase family 2%2C sugar binding domain protein;protein_id=EDO10817.1;transl_table=11;translation=length.643
AAXF02000051	GenBank	exon	63463	65394	.	-	1	Parent=BACOVA_03450.t01