LOCUS CP001340 6575 bp DNA linear BCT 31-OCT-2018 DEFINITION Caulobacter crescentus NA1000, complete genome. ACCESSION CP001340 VERSION CP001340.1 DBLINK BioProject: PRJNA32027 BioSample: SAMN02604151 KEYWORDS . SOURCE Caulobacter vibrioides NA1000 ORGANISM Caulobacter vibrioides NA1000 Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter. REFERENCE 1 (bases 1 to 6575) AUTHORS Marks,M.E., Castro-Rojas,C.M., Teiling,C., Du,L., Kapatral,V., Walunas,T.L. and Crosson,S. TITLE The genetic basis of laboratory adaptation in Caulobacter crescentus JOURNAL J. Bacteriol. 192 (14), 3678-3688 (2010) PUBMED 20472802 REFERENCE 2 (bases 1 to 6575) AUTHORS Marks,M.E., Teiling,C., Du,L., Kapatral,V., Walunas,T.L. and Crosson,S. TITLE Direct Submission JOURNAL Submitted (05-JAN-2009) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St., Chicago, IL 60637, USA REFERENCE 3 (bases 1 to 6575) AUTHORS Marks,M.E., Teiling,C., Du,L., Kapatral,V., Walunas,T.L. and Crosson,S. TITLE Direct Submission JOURNAL Submitted (28-JUL-2010) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St., Chicago, IL 60637, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 6575) AUTHORS Marks,M.E., Teiling,C., Du,L., Kapatral,V., Walunas,T.L. and Crosson,S. TITLE Direct Submission JOURNAL Submitted (15-SEP-2010) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St., Chicago, IL 60637, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 6575) AUTHORS Crosson,S. TITLE Direct Submission JOURNAL Submitted (11-OCT-2011) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St. - W138, Chicago, IL 60637, USA REMARK Protein update by submitter. REFERENCE 6 (bases 1 to 6575) AUTHORS Crosson,S. TITLE Direct Submission JOURNAL Submitted (18-APR-2013) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St. - W138, Chicago, IL 60637, USA REMARK Protein update by submitter REFERENCE 7 (bases 1 to 6575) AUTHORS Schrader,J., Zhou,B., Li,G.-W., Lasker,K., Long,T., Etheredge,L., Ely,B., McAdams,H., Weissman,J., Shapiro,L. and Crosson,S. TITLE Direct Submission JOURNAL Submitted (08-FEB-2014) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St. - GCIS W138, Chicago, IL 60637, USA REMARK Protein update by submitter REFERENCE 8 (bases 1 to 6575) AUTHORS Schrader,J., Viollier,P., Radhakrishnan,S., Ely,B. and Crosson,S. TITLE Direct Submission JOURNAL Submitted (03-SEP-2016) Biochemistry and Molecular Biology, University of Chicago, 929 E. 57th St. - GCIS W138, Chicago, IL 60637, USA REMARK Protein update by submitter COMMENT Bacterial strain Caulobacter crescentus NA1000 and source genomic DNA are available from Crosson Lab, Department of Biochemistry and Molecular Biology, The University of Chicago, 929 E. 57th St., Chicago, IL 60637. FEATURES Location/Qualifiers source 1..6575 /organism="Caulobacter vibrioides NA1000" /mol_type="genomic DNA" /strain="NA1000" /db_xref="taxon:565050" gene complement(1..924) /locus_tag="CCNA_01192" CDS complement(1..924) /locus_tag="CCNA_01192" /EC_number="2.7.1.4" /experiment="gene is required for robust growth in the presence of sucrose as a sole carbon source according to Modrak, et al. (2018), DOI 10.1007/s12275-018-8225-x" /note="CC_1134" /codon_start=1 /transl_table=11 /product="fructokinase SucC" /protein_id="ACL94657.1" /translation="MAGRPMSRIAAIELGGTKVMVAFGSGPDDLSPPLRIPTTTPAETL ARIEDALAAEQGRFDAIGVASFGPIRLDPAAPDWGHILKTPKPGWSHADVAARLVRRFD RPLALDTDVNGAAVAEGLWGAAKGLGDYAYVTVGTGVGVGLVVNGAPTHGLLHPEAGHI LVRRDAALDPFTGSCPFHGDCLEGLISGPALAARTGAPGESLSKDDPVWALVADYLAQL VANLALIASPRRVIIGGGVGGNPQLLEQTRTRLQTHLAGYLAPLEQRSDIDAFVAAPGL GANSGLLGAVALGLRHDAILRQDLMP" gene complement(906..2735) /locus_tag="CCNA_01193" CDS complement(906..2735) /locus_tag="CCNA_01193" /EC_number="2.4.1.4" /experiment="EXISTENCE:LC-MS" /experiment="gene is required for robust growth in the presence of sucrose as a sole carbon source according to Modrak, et al. (2018), DOI 10.1007/s12275-018-8225-x" /note="CC_1135" /codon_start=1 /transl_table=11 /product="GH13_4" /protein_id="ACL94658.2" /translation="MISTASIPTPYDDAVQARFAALWPIVESRFAKLYGADARGPAVLE RLKTNLLKAAHARPEPLRALDAARAADPAWLHAPGQTAYTFYVDRFAGDLNGVRGKLDY LTELGVRWLHPLPLLEPRPGDSDGGFAVADYRKVDPRLGTIDDLEALAGDLRQRDMGLI LDVVCNHTAREHAWAAKARAGDPAYRDYYIVLPDAQSAAARDRELIDVFPDTAPGSFTY DAAMGGYVWTTFYPFQWDLNYANPAVFAEMLEVLIFLAAKGAQGFRLDSAPFLWKQAGT TCRNLPQTYEIVEAWRAALSIVAPGVVLLAEAIESVEDVLPFFGGEESGCNLAYNNVVM TALWAALADGDAVIARRCLAVAARKPAQGAWLNYVRCHDDLIWNALAAYAPASDLRRWS NAYGNGEGFSRGRAFQTAEGGVPSTNGMAAALAGLTADADGDCLGARRLRLLYGIIHAL DGWPLIYMGDEIGLDNDEAYQDDPLRAGDGRWLHRPQMDWSLAERRGEAGALQADLFAT FARLGQRARRLATLGVAGPARPVEVSSPAVLAFLRDEGARPFLCVANVSDAPQDFELPP AFAQGAEDVLDGAPSPAGAVSLPPYGITWLVAR" gene complement(2753..2827) /locus_tag="CCNA_R0135" ncRNA complement(2753..2827) /ncRNA_class="other" /locus_tag="CCNA_R0135" /product="small non-coding RNA" /experiment="EXISTENCE:RNA-seq" gene complement(2946..5399) /locus_tag="CCNA_01194" CDS complement(2946..5399) /locus_tag="CCNA_01194" /experiment="EXISTENCE:LC-MS" /experiment="EXISTENCE:Ribosome profiling" /experiment="gene is required for sucrose uptake according to Modrak, et al. (2018), DOI 10.1007/s12275-018-8225-x" /note="CC_1136" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor SucA" /protein_id="ACL94659.1" /translation="MNRQKSRLLVGAAVLAMLPLAAHAQQSVTKNDQDVLELDAVVITA SRDGATKMNSSISVSALSADQILAQAPRSTAEIFRGLPGVRSEATGGDGNANIAVRGLP VASGGAKFLQLQEDGLPVMEFGDIAFGNADIFLRADQNVARIESVRGGSSSTFASNSPG GVINFISKTGEVEGGEIALTKGLGYDHTRLDFDYGAPLSDTLRFHVGGFYREGEGARKS GYTSEKGGQIKANLTKDFENGFIRLNVKYLNDRAVGYLPMPTRVTGSNGDPDIGSFAGY DIGRDDLQSIYLARNPGLDGDGNRRISKVADGMHPDTLQFGAEAKFDIGGWKIEDRFKV AKTSGRFVAPFPAEVLSAQALATSIGGAGATLRYANGPSAGQAITAPGSLNGNGLAMRI HMFDVEINDFGNAMNDLKLSRSFDTGAAVVDVTVGYYKSRQTIAMDWLWNTFVSEVKGD NAALLDVYNSAGTKLTQTGLAAYGVPLWGNCCTRRYDVTYDIDAPYLSLSSRIGDLSLD ASLRRDEGKARGLYAGAKQAAVDVNGDGVIQNVEQSVSVIDNANASPVNYDWGYTSWSL GANYQFNPDVAAFARVSRGGRANADRLLFGKVRADGTVSKEDAVDMVDQVEGGVKYRRA GFGLFATAFWARTQEQNFEATSQRFFDRTYKAKGIELEASYRIGDFSVTGGATYTDAVI DKDALTPAVVGNAPRRQAKWIYQFAPTWTINDKATIGASVIGTTKAYAQDDNQLIFPAY AQVNAFAEYKLAETLSLSVNANNLFDKVGLTEAEEGSITAGSVNAIRARSINGRTVTAT LRYSF" gene complement(5550..6575) /locus_tag="CCNA_01195" CDS complement(5550..6575) /locus_tag="CCNA_01195" /experiment="EXISTENCE:LC-MS" /experiment="EXISTENCE:Ribosome profiling" /experiment="gene product represses expression of the adjacent sucrose utilization operon according to Modrak, et al. (2018), DOI 10.1007/s12275-018-8225-x" /note="CC_1137" /codon_start=1 /transl_table=11 /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0036955" /protein_id="ACL94660.1" /translation="MSRQPTEPKSARLKMADIAKLAGVSTSTVSRALAGNPSIPQALRD QISELARTHGYVINQSARSLRLQRTHTIGLIVPLGHERDQLITDPFFLEMIGRLADEIT GRGYEVLLNKVVAPRADWLRRIVQSHRSDGLLIIGQSDQHEALNALADTYRPLVVWGGD IAERRYCTVGSDNVAGARLATQHMIAQGRRRIAFLGLPGAPEVELRREGYLQALREAGL SPYPELSAPAHFTIESAEPSVRALIDSGATFDGVLAASDLIAVTAINTLTAAGRTVPDE ISVVGFDDISLARYSAPPLTTVRQDLATGARTMVDLLFRRIEGASTESVFMTPELVVRG T" ORIGIN 1 tcatggcatc aggtcctgcc gtaggatggc gtcgtgtcga aggcccagcg cgacggcgcc 61 gagcaggccg gagttcgcgc cgaggcccgg cgccgcgacg aaggcgtcga tgtcggacct 121 ctgctcgagc ggcgcgaggt agccggctag gtgtgtctgc agccgcgtcc gcgtctgctc 181 caacagctgc ggattgcccc cgacgccgcc gccgatgatc acgcgccggg gcgaggcgat 241 caaggcgagg ttggccacca gctgggccag atagtcggcg accagcgccc agacggggtc 301 gtccttggac agcgactcgc cgggcgcgcc ggtccgcgcg gccagggccg gcccgctgat 361 caggccttca agacaatcgc catggaacgg gcaggacccg gtgaaggggt ctagggccgc 421 atcgcgccgg acgaggatat gaccggcctc gggatgcagc aggccgtgcg ttggcgcgcc 481 attgacgacg aggcctacgc cgacgccggt gccgaccgtg acataggcat agtcgccaag 541 ccccttggcc gcgccccaga gtccttcggc cacggcggcg ccgttcacgt cggtgtccag 601 ggcgagcggc cgatcgaacc ttcggacgag ccgggcggcc acatcggcgt gcgaccagcc 661 gggcttgggg gtcttgagga tatggcccca gtccggcgcg gccggatcca gccggatggg 721 gccgaagctg gccacgccga tcgcatcgaa gcggccttgc tcggcggcga gcgcgtcttc 781 gatccgggcc agggtctcgg ccggcgtcgt ggtggggatg cggagcgggg gcgacaggtc 841 gtccggcccc gatccgaagg ccaccatcac cttggtgccg cccagctcga tcgcagcgat 901 ccggctcatc gggcgaccag ccacgtgatg ccatagggcg gcaggctgac ggctccggcg 961 ggggaggggg cgccatcaag cacgtcctcg gcgccttggg cgaacgccgg gggcagttcg 1021 aagtcttgcg gcgcatctga gacattggcg acgcacagga acggccgcgc gccttcatcg 1081 cgcaggaaag ccagaacagc cggcgaggac acttcaaccg gccgcgcagg accggcgacg 1141 cccagggtcg ccaggcgccg cgcgcgctgg cccagcctgg cgaaggtggc gaacaggtcg 1201 gcctgcagcg cgccggcctc gcctcgacgc tcggccagcg accagtccat ctgcgggcgg 1261 tgcagccagc gtccgtcgcc ggcgcgcagc gggtcgtcct gataggcctc gtcgttatcg 1321 agaccgatct cgtcgcccat atagatcagc ggccagccgt ccagcgcgtg gatgatcccg 1381 tagagcaagc gaagccgccg cgcgccgagg cagtcgccat cggcgtcagc agtgaggccg 1441 gccagtgcgg ccgccatgcc gttggtcgac ggaacgcccc cttcggcggt ctggaaggcg 1501 cgaccgcgcg agaagccctc gccattccca taggcgtttg accaacgtcg caggtcactg 1561 gccggggcat aggccgccag ggcgttccag atcagatcgt cgtggcagcg cacatagttg 1621 agccacgcgc cctgggccgg cttgcgcgcc gcgaccgcca ggcagcgccg ggcgatcacc 1681 gcatcgccgt cggccaacgc cgcccacagg gccgtcatga ccacgttgtt gtaggcgagg 1741 ttgcagccgg actcctcacc gccgaagaag ggcagaacgt cctcgacgct ctcgatcgcc 1801 tcggccagca gcacgacgcc cggcgcgacg atcgacagcg ccgcgcgcca ggcttcaaca 1861 atctcgtagg tctgcggaag gttgcgacag gtggtgcccg cctgcttcca gaggaacggc 1921 gcgctgtcga gccggaaccc ttgggcgccc ttggccgcca ggaagatcaa cacctccagc 1981 atctcggcga agacggcggg gttggcgtag ttcaggtccc actggaacgg atagaaggtg 2041 gtccagacat agccacccat cgccgcgtcg taggtgaagc tgcccggcgc ggtgtcggga 2101 aagacgtcga tcagctcgcg atcgcgcgcg gcggcgctct gcgcatccgg aagcacgatg 2161 tagtagtcgc gataggcggg gtcgcccgcg cgggccttgg ccgcccaggc gtgctcgcgg 2221 gccgtgtggt tgcacaccac atcaaggatc agtcccatgt cgcgctggcg aaggtcgccg 2281 gccagggcct caaggtcgtc gatcgtgccc aggcgcggat caaccttgcg atagtcggcg 2341 accgcaaagc cgccgtcgct gtcgccgggg cgcggttcca gcagcggcag cgggtggagc 2401 cagcgcacgc ccagctcggt cagatagtcc agcttgccgc ggacgccgtt gagatcgccg 2461 gcgaagcgat cgacatagaa ggtgtaggcg gtctgccccg gcgcgtgcag ccacgcggga 2521 tcggccgccc gcgccgcatc gagcgcgcgc aggggctctg gccgcgcatg ggcggctttg 2581 agaagattgg tcttcaggcg ttcgaggacg gcggggccgc gcgcatccgc gccatagagc 2641 ttggcgaacc gcgattccac gatcggccac agcgcggcga accgagcctg gacggcgtcg 2701 tcgtacggcg tcgggatcga agcggtggaa atcatgccgg aacgctcgcg aaggagtggc 2761 ctcgccaggg cgttgggggc gcactggcga ggccgaggcg ccgacggggc aggaaacccg 2821 tcggcgatgg ggggtagagc cttgcgcgtc gaaacggaat cgtttcgacg cgataacaag 2881 gctctaaatc aaacacttag agcgtgactg gcgccgaaac cggttcccac tttcggcgtc 2941 acgctctaga agctgtaccg aagcgtcgcc gtgacggtgc gaccgttgat cgagcgggcg 3001 cggatcgcat tgactgaccc cgccgtgatc gaaccctctt cggcttcggt caggccgacc 3061 ttgtcgaaca ggttgttggc gttgaccgac agcgacagcg tctctgccag cttgtactcg 3121 gcgaaggcgt tgacctgggc gtaggccggg aagatcagct ggttgtcgtc ctgggcgtag 3181 gccttggtgg tgccgatgac gctggcgccg atcgtggcct tgtcattgat cgtccaggtc 3241 ggggcgaact ggtagatcca cttggcctgg cggcgcggcg cgttgccgac gacggcgggc 3301 gtcagagcgt ccttgtcgat gaccgcgtcg gtataggtgg cgccgccggt gacggagaag 3361 tcgccgatcc ggtagctggc ctccagttcg atacccttgg ccttgtaggt gcggtcgaag 3421 aacctctggc tggtggcctc gaagttctgc tcctgggtgc gggcccagaa ggccgtagcg 3481 aacaggccaa agccggcgcg gcgatacttc accccgccct cgacctgatc gaccatgtcg 3541 acggcgtctt ccttcgacac cgtgccatcg gcgcggacct tgccgaacag cagacggtcg 3601 gcgttggcgc gaccgccgcg gctgacgcgg gcgaaggcgg cgacgtcggg attgaactgg 3661 tagttcgcgc ccagcgacca ggaggtgtag ccccagtcgt agttgaccgg cgaggcgttg 3721 gcgttgtcga tgaccgacac gctctgctcg acgttctgga tcaccccgtc gccgttgacg 3781 tcgacggcgg cctgcttggc cccggcatag aggccgcgcg ccttgccttc atcgcggcgg 3841 aggctggcgt ccaggctcag atcgccgatg cggctcgaca ggctcagata cggcgcgtcg 3901 atgtcgtagg tgacgtcata gcggcgggtg cagcagttac cccacagcgg cacgccatag 3961 gcggccagac ccgtctgggt cagcttggtc ccagcgctgt tgtagacatc cagcagggcg 4021 gcgttgtcgc ccttcacttc cgagacgaag gtgttccaca gccagtccat ggcgatggtc 4081 tggcgcgact tgtaatagcc caccgtcacg tcgaccacgg cagcgccggt gtcgaagctg 4141 cgcgacagct tcaggtcgtt catggcgttg ccgaagtcgt tgatctcgac atcgaacatg 4201 tggatgcgca tcgcaaggcc gttgccgttc aggctgcccg gcgcggtgat cgcctggccg 4261 gcgctggggc cgttggcgta gcgcagggtt gcgccggccc cgccgatcga cgtggccagg 4321 gcctgggccg agaggacctc ggccgggaag ggggcgacga agcgtcccga ggtcttggcg 4381 accttgaagc ggtcctcgat cttccagccg ccgatatcga acttggcctc ggcgccgaac 4441 tgcagggtgt cggggtgcat gccgtcggcg accttgctga tccggcgatt gccgtcgccg 4501 tccaggcccg gattgcgggc caggtagatc gactgtaggt cgtcgcggcc gatgtcgtaa 4561 ccggcgaagg agccgatatc gggatcgccg ttcgagccgg tcacccgcgt cggcatcggc 4621 aagtagccca cggcgcgatc gttcagatac ttgacgttca ggcggataaa gccgttctcg 4681 aagtccttgg tcaggttggc cttgatctgg ccgccctttt ccgaggtgta gcccgacttc 4741 cgggcgcctt cgccctcgcg atagaagccg ccgacatgga agcgcagggt gtcgctcagc 4801 ggcgcgccat agtcgaagtc caggcgggtg tggtcgtagc ccaggccctt ggtcagagcg 4861 atctcgccgc cctcgacctc gccggtcttg ctgatgaaat tgatcacgcc gccgggcgag 4921 ttcgacgcga aggtcgagga tgaaccgccg cgcaccgact cgatacgggc cacgttctgg 4981 tcggcgcgca ggaagatgtc ggcgttaccg aaggcgatgt cgccgaactc catgaccggc 5041 aggccgtctt cctgcagctg caggaacttg gcgccgcccg aggccacggg caggccgcgc 5101 acggcgatgt tggcgttacc gtcgccgccc gtcgcttccg aacgcacgcc tggcaggccg 5161 cggaagattt cggccgtcga gcgcggggcc tgggccagga tctggtcggc cgacagcgcg 5221 ctgacggaaa tggacgagtt catcttggtc gcgccgtcgc gcgaggcggt gatgacgacc 5281 gcgtctagtt ccaggacgtc ctggtcgttt ttcgtgacgc tctgttgggc gtgcgccgcc 5341 agcggcagca tggcgagcac tgcggcgccc acgagcaggc gcgacttttg ccggttcata 5401 tcttcctcct catgcgcccc cgcttcttgt ggcgaggact tcgggggcga gagtgatcat 5461 ctcgcaatcg attgcgaaac caaaaaagca cagcttagaa cttttggcaa tcgattgcgt 5521 tagttctgca acaccttacc agtccggtct catgtgccgc gcacgacgag ctcgggcgtc 5581 atgaagaccg actctgtgga ggccccctcg atacggcgga acaggaggtc caccatggtg 5641 cgcgcgcccg tcgccaggtc ctgccgcact gtcgtgagcg gcggagcgct gtagcgcgcc 5701 aagctgatgt cgtcgaagcc gaccaccgag atctcgtcgg gaaccgtgcg cccggcggcg 5761 gtcagagtgt tgatcgctgt gacggcgatc aggtcagagg cggccaggac gccatcgaac 5821 gtcgcgccgc tgtcgatcag cgcccgcacc gagggttcag ccgactcgat cgtgaagtgc 5881 gccggagcgc tgagctccgg ataggggctc aggcccgcct ccctgagcgc ctggagatag 5941 ccttcgcggc gcagttccac ctcgggcgct cccggcaacc ccagaaaggc gatccgccga 6001 cggccctggg cgatcatgtg ctgggtggcg agccgggcgc cggcgacatt gtccgagccg 6061 accgtgcaat agcgccgctc ggcgatgtcg ccgccccaga cgacgagggg gcgataggtg 6121 tcggcgagtg cgttcaacgc ctcgtgctgg tcgctctggc cgatgatcaa caggccgtcg 6181 gagcggtggg actggacgat ccggcgtagc cagtcggccc ggggcgcgac gaccttgttg 6241 agcaacacct catagccccg ccccgtgatc tcgtcggcga gacggccgat catctccagg 6301 aagaacggat cggtgatcaa ctgatcgcgc tcgtgcccga ggggcacgat gaggccaatc 6361 gtatgggtgc gttggaggcg caggctccga gccgactggt tgatcacata gccatgggtc 6421 ctggccaatt cggagatctg gtcccgcagc gcctggggga tggacggatt tcccgccagg 6481 gcgcgcgaca ctgtcgacgt cgaaaccccc gccagcttgg cgatgtccgc catcttcagg 6541 cgggccgact tgggctcggt gggctggcga ctcat //