##gff-version 3
##sequence-region NC_004307 1 4476
# conversion-by bp_genbank2gff3.pl
# organism Bifidobacterium longum NCC2705
# Note Bifidobacterium longum NCC2705, complete sequence.
# date 10-MAR-2020
NC_004307	GenBank	region	1	4476	.	+	1	ID=NC_004307;Dbxref=BioProject:PRJNA224116,taxon:206672;Name=NC_004307;Note=Bifidobacterium longum NCC2705%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from AE014295. On Jan 21,2005 this sequence version replaced NC_004307.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/10/2020 04:53:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 1,902 CDSs (total) :: 1,831 Genes (coding) :: 1,773 CDSs (with protein) :: 1,773 Genes (RNA) :: 71 rRNAs :: 4,4,4 (5S,16S,23S) complete rRNAs :: 4,4,4 (5S,16S,23S) tRNAs :: 56 ncRNAs :: 3 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 25 of 58 Pseudo Genes (incomplete) :: 35 of 58 Pseudo Genes (internal stop) :: 5 of 58 Pseudo Genes (multiple problems) :: 7 of 58 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AE014295. On Jan 21%2C 2005 this sequence version replaced NC_004307.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/10/2020 04:53:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 1%2C902 CDSs (total) :: 1%2C831 Genes (coding) :: 1%2C773 CDSs (with protein) :: 1%2C773 Genes (RNA) :: 71 rRNAs :: 4%2C 4%2C 4 (5S%2C 16S%2C 23S) complete rRNAs :: 4%2C 4%2C 4 (5S%2C 16S%2C 23S) tRNAs :: 56 ncRNAs :: 3 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 25 of 58 Pseudo Genes (incomplete) :: 35 of 58 Pseudo Genes (internal stop) :: 5 of 58 Pseudo Genes (multiple problems) :: 7 of 58 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=10-MAR-2020;mol_type=genomic DNA;organism=Bifidobacterium longum NCC2705;strain=NCC2705
NC_004307	GenBank	gene	1	1044	.	-	1	ID=BL_RS06445;Dbxref=GeneID:1021990;Name=BL_RS06445;old_locus_tag=BL0533
NC_004307	GenBank	mRNA	1	1044	.	-	1	ID=BL_RS06445.t01;Parent=BL_RS06445
NC_004307	GenBank	CDS	1	1044	.	-	1	ID=BL_RS06445.p01;Parent=BL_RS06445.t01;Dbxref=GeneID:1021990;Name=BL_RS06445;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003833666.1;old_locus_tag=BL0533;product=LacI family transcriptional regulator;protein_id=WP_011068530.1;transl_table=11;translation=length.347
NC_004307	GenBank	exon	1	1044	.	-	1	Parent=BL_RS06445.t01
NC_004307	GenBank	gene	1108	2745	.	-	1	ID=BL_RS06450;Dbxref=GeneID:1022446;Name=BL_RS06450;old_locus_tag=BL0534
NC_004307	GenBank	mRNA	1108	2745	.	-	1	ID=BL_RS06450.t01;Parent=BL_RS06450
NC_004307	GenBank	CDS	1108	2745	.	-	1	ID=BL_RS06450.p01;Parent=BL_RS06450.t01;Dbxref=GeneID:1022446;Name=BL_RS06450;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015713226.1;old_locus_tag=BL0534;product=MFS transporter;protein_id=WP_011068531.1;transl_table=11;translation=length.545
NC_004307	GenBank	exon	1108	2745	.	-	1	Parent=BL_RS06450.t01
NC_004307	GenBank	gene	2950	4476	.	-	1	ID=BL_RS06455;Dbxref=GeneID:1023144;Name=BL_RS06455;old_locus_tag=BL0536
NC_004307	GenBank	mRNA	2950	4476	.	-	1	ID=BL_RS06455.t01;Parent=BL_RS06455
NC_004307	GenBank	CDS	2950	4476	.	-	1	ID=BL_RS06455.p01;Parent=BL_RS06455.t01;Dbxref=GeneID:1023144;eC_number=2.4.1.7;Name=BL_RS06455;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015438242.1;old_locus_tag=BL0536;product=sucrose phosphorylase;protein_id=WP_011068532.1;transl_table=11;translation=length.508
NC_004307	GenBank	exon	2950	4476	.	-	1	Parent=BL_RS06455.t01