##gff-version 3
##sequence-region NC_004307 1 4128
# conversion-by bp_genbank2gff3.pl
# organism Bifidobacterium longum NCC2705
# Note Bifidobacterium longum NCC2705, complete sequence.
# date 10-MAR-2020
NC_004307	GenBank	region	1	4128	.	+	1	ID=NC_004307;Dbxref=BioProject:PRJNA224116,taxon:206672;Name=NC_004307;Note=Bifidobacterium longum NCC2705%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from AE014295. On Jan 21,2005 this sequence version replaced NC_004307.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/10/2020 04:53:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 1,902 CDSs (total) :: 1,831 Genes (coding) :: 1,773 CDSs (with protein) :: 1,773 Genes (RNA) :: 71 rRNAs :: 4,4,4 (5S,16S,23S) complete rRNAs :: 4,4,4 (5S,16S,23S) tRNAs :: 56 ncRNAs :: 3 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 25 of 58 Pseudo Genes (incomplete) :: 35 of 58 Pseudo Genes (internal stop) :: 5 of 58 Pseudo Genes (multiple problems) :: 7 of 58 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from AE014295. On Jan 21%2C 2005 this sequence version replaced NC_004307.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/10/2020 04:53:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 1%2C902 CDSs (total) :: 1%2C831 Genes (coding) :: 1%2C773 CDSs (with protein) :: 1%2C773 Genes (RNA) :: 71 rRNAs :: 4%2C 4%2C 4 (5S%2C 16S%2C 23S) complete rRNAs :: 4%2C 4%2C 4 (5S%2C 16S%2C 23S) tRNAs :: 56 ncRNAs :: 3 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 25 of 58 Pseudo Genes (incomplete) :: 35 of 58 Pseudo Genes (internal stop) :: 5 of 58 Pseudo Genes (multiple problems) :: 7 of 58 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=10-MAR-2020;mol_type=genomic DNA;organism=Bifidobacterium longum NCC2705;strain=NCC2705
NC_004307	GenBank	gene	1	1525	.	-	1	ID=BL_RS00545;Dbxref=GeneID:1022296;Name=BL_RS00545;old_locus_tag=BL0105
NC_004307	GenBank	mRNA	1	1525	.	-	1	ID=BL_RS00545.t01;Parent=BL_RS00545
NC_004307	GenBank	CDS	1	1525	.	-	1	ID=BL_RS00545.p01;Parent=BL_RS00545.t01;Dbxref=GeneID:1022296;Name=BL_RS00545;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003834253.1;old_locus_tag=BL0105;product=glycoside hydrolase family 32 protein;protein_id=WP_008782652.1;transl_table=11;translation=length.518
NC_004307	GenBank	exon	1	1525	.	-	1	Parent=BL_RS00545.t01
NC_004307	GenBank	gene	1536	2873	.	-	1	ID=BL_RS00550;Dbxref=GeneID:1022295;Name=BL_RS00550;old_locus_tag=BL0106
NC_004307	GenBank	mRNA	1536	2873	.	-	1	ID=BL_RS00550.t01;Parent=BL_RS00550
NC_004307	GenBank	CDS	1536	2873	.	-	1	ID=BL_RS00550.p01;Parent=BL_RS00550.t01;Dbxref=GeneID:1022295;Name=BL_RS00550;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012577172.1;old_locus_tag=BL0106;product=MFS transporter;protein_id=WP_011067958.1;transl_table=11;translation=length.445
NC_004307	GenBank	exon	1536	2873	.	-	1	Parent=BL_RS00550.t01
NC_004307	GenBank	gene	3088	4128	.	-	1	ID=BL_RS00555;Dbxref=GeneID:1022294;Name=BL_RS00555;old_locus_tag=BL0107
NC_004307	GenBank	mRNA	3088	4128	.	-	1	ID=BL_RS00555.t01;Parent=BL_RS00555
NC_004307	GenBank	CDS	3088	4128	.	-	1	ID=BL_RS00555.p01;Parent=BL_RS00555.t01;Dbxref=GeneID:1022294;Name=BL_RS00555;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011067959.1;old_locus_tag=BL0107;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_011067959.1;transl_table=11;translation=length.346
NC_004307	GenBank	exon	3088	4128	.	-	1	Parent=BL_RS00555.t01